View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4260_low_1 (Length: 456)
Name: NF4260_low_1
Description: NF4260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4260_low_1 |
 | |
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| [»] scaffold0013 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 20 - 446
Target Start/End: Original strand, 13052220 - 13052645
Alignment:
| Q |
20 |
gccccctgagttttggatcctaccttcatttcttcctatgcatccaggttcaatcattttgattatgttttgtttaatttatattatgtgtgtgtgaaat |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
13052220 |
gccccctgagttttggatcctaccttcatttcttcctatgcatccaggttcaattattttgattatgttttgtt-aatttatattatgtgtgtgtgaaat |
13052318 |
T |
|
| Q |
120 |
gaagaaacaatgacttgagagtttattctatctccttttcacattaattaattgtaggtaaaatgtggtgttattgtcgattgacatacatgcctatgtc |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13052319 |
gaagaaacaatgacttgagagtttattctatctccttttcaaattaattaattgtaggtaaaatgtggtgttattgtcgattgacatacatgcctatgtc |
13052418 |
T |
|
| Q |
220 |
ttacttgtacgggaagaggtttgtgggtcgaatcacaccactcatcttacagttgagagaagaaattcataatcaaccttacgaaaaagttgattggtca |
319 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13052419 |
ttacttgtacgggaagaggtttgtgggtcgaatcacaccactcatcttacagttgagagaagaaattcataatcaaccttacgaaaaagttgattggttc |
13052518 |
T |
|
| Q |
320 |
aaatcacgtcaccaatgtgcaaaggtgagagtcatagtcgtgttcgaacgataacatacataggagggataaatgatccattttatgtcgacccgtacag |
419 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| | | ||||| |
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| T |
13052519 |
aaatcacgtcaccaatgtgcaaaggtgagagtcgtagtcgtgtttgaatgataacatacataggagggataaatgatccattttatgtcgtctcatacag |
13052618 |
T |
|
| Q |
420 |
gaagatctttactatcctcatcctttg |
446 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
13052619 |
gaagatctttactatcctcatcctttg |
13052645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 116; Significance: 8e-59; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 167 - 354
Target Start/End: Original strand, 103441 - 103628
Alignment:
| Q |
167 |
ttaattgtaggtaaaatgtggtgttattgtcgattgacatacatgcctatgtcttacttgtacgggaagaggtttgtgggtcgaatcacaccactcatct |
266 |
Q |
| |
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||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |
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| T |
103441 |
ttaattgcagctaaaatgtggtgttattgtcgattggtatacatgcctatgtcttacttgtacgggaagagatttgtgggtccgatcacaccactcatct |
103540 |
T |
|
| Q |
267 |
tacagttgagagaagaaattcataatcaaccttacgaaaaagttgattggtcaaaatcacgtcaccaatgtgcaaaggtgagagtcat |
354 |
Q |
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| T |
103541 |
tacagttgagagaagaactccatactcagccttatgaaaaaattaactggacgaaatcacgtcacctatgtgcaaaggtgagagtcat |
103628 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 136 - 352
Target Start/End: Original strand, 164376 - 164592
Alignment:
| Q |
136 |
gagagtttattctatctccttttcacattaattaattgtaggtaaaatgtggtgttattgtcgattgacatacatgcctatgtcttacttgtacgggaag |
235 |
Q |
| |
|
||||||||||||||||| ||||||| || || || || ||||||||||||||||||||| || ||||||||| ||||||||||||||||||||| |
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| T |
164376 |
gagagtttattctatctgattttcacctttgttttttacagctaaaatgtggtgttattgtcggttagtatacatgccgatgtcttacttgtacgggaag |
164475 |
T |
|
| Q |
236 |
aggtttgtgggtcgaatcacaccactcatcttacagttgagagaagaaattcataatcaaccttacgaaaaagttgattggtcaaaatcacgtcaccaat |
335 |
Q |
| |
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|||||||| |||| ||||||||||||||||||||||||||||||||| | |||| |||||||| |||||| | ||||| | ||||||||||||| || |
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| T |
164476 |
aggtttgtaggtcctatcacaccactcatcttacagttgagagaagaactccatacccaaccttatgaaaaaactaattggacgaaatcacgtcacctat |
164575 |
T |
|
| Q |
336 |
gtgcaaaggtgagagtc |
352 |
Q |
| |
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|||||||||| |||||| |
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| T |
164576 |
gtgcaaaggttagagtc |
164592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 103268 - 103321
Alignment:
| Q |
20 |
gccccctgagttttggatcctaccttcatttcttcctatgcatccaggttcaat |
73 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
103268 |
gccccctgagttttggatccttccttcatttcttcctatgcatccaggttcaat |
103321 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 162539 - 162592
Alignment:
| Q |
20 |
gccccctgagttttggatcctaccttcatttcttcctatgcatccaggttcaat |
73 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
162539 |
gccccctgagttttggatccttccttcatttcttcctatgcatccaggttcaat |
162592 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 134 - 346
Target Start/End: Complemental strand, 12137889 - 12137677
Alignment:
| Q |
134 |
ttgagagtttattctatctccttttcacattaattaattgtaggtaaaatgtggtgttattgtcgattgacatacatgcctatgtcttacttgtacggga |
233 |
Q |
| |
|
||||||||||||| |||||| ||| || |||| |||||| || ||||||||||||||| ||||||||| |||||||||||||||||||||||| || | |
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|
| T |
12137889 |
ttgagagtttattatatctcaattttaccttaactaattgcagctaaaatgtggtgttactgtcgattggtatacatgcctatgtcttacttgtatggaa |
12137790 |
T |
|
| Q |
234 |
agaggtttgtgggtcgaatcacaccactcatcttacagttgagagaagaaattcataatcaaccttacgaaaaagttgattggtcaaaatcacgtcacca |
333 |
Q |
| |
|
|||| ||||||||| ||||||||| |||||||||||||||||||||||| | ||| | ||||||| | ||||||| ||||| |||| |||||||||| |
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| T |
12137789 |
agagatttgtgggttcaatcacaccgctcatcttacagttgagagaagaactctatactgaaccttatgcaaaagttaattggaaaaaagcacgtcacca |
12137690 |
T |
|
| Q |
334 |
atgtgcaaaggtg |
346 |
Q |
| |
|
||||| |||||| |
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|
| T |
12137689 |
gtgtgcgaaggtg |
12137677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 79; Significance: 9e-37; HSPs: 2)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 178 - 348
Target Start/End: Complemental strand, 92849 - 92679
Alignment:
| Q |
178 |
taaaatgtggtgttattgtcgattgacatacatgcctatgtcttacttgtacgggaagaggtttgtgggtcgaatcacaccactcatcttacagttgaga |
277 |
Q |
| |
|
|||||||||||| ||||||||| || |||| | || ||||||||||||||||| ||||||||||| |||| ||||||||||||| |||||||||||||| |
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|
| T |
92849 |
taaaatgtggtgctattgtcgactggtatacttaccgatgtcttacttgtacggaaagaggtttgtcggtccaatcacaccactcgtcttacagttgaga |
92750 |
T |
|
| Q |
278 |
gaagaaattcataatcaaccttacgaaaaagttgattggtcaaaatcacgtcaccaatgtgcaaaggtgag |
348 |
Q |
| |
|
|||||| |||||| ||||||||| | |||||| | ||| |||| |||| |||| ||||||||||||||| |
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|
| T |
92749 |
gaagaacttcatactcaaccttatggtaaagttaactggaaaaaagcacgccacctatgtgcaaaggtgag |
92679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 93094 - 93049
Alignment:
| Q |
24 |
cctgagttttggatcctaccttcatttcttcctatgcatccaggtt |
69 |
Q |
| |
|
||||| |||||| |||| ||||||||||| |||||||||||||||| |
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|
| T |
93094 |
cctgaattttggctccttccttcatttctccctatgcatccaggtt |
93049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 6e-35; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 181 - 348
Target Start/End: Complemental strand, 5722638 - 5722471
Alignment:
| Q |
181 |
aatgtggtgttattgtcgattgacatacatgcctatgtcttacttgtacgggaagaggtttgtgggtcgaatcacaccactcatcttacagttgagagaa |
280 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||||||| || ||||||||||| |||| |||||||||| | |||||| ||||||||||| |
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|
| T |
5722638 |
aatgttgtgttattgtcgattggtatacatgcctatgtcttacttgtatggaaagaggtttgtcggtccaatcacaccattgatcttaaagttgagagaa |
5722539 |
T |
|
| Q |
281 |
gaaattcataatcaaccttacgaaaaagttgattggtcaaaatcacgtcaccaatgtgcaaaggtgag |
348 |
Q |
| |
|
||| | | || ||||||| ||||||||| ||||| |||| |||||||| ||||||||||||||| |
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|
| T |
5722538 |
gaactccttacagaaccttatgaaaaagttaattggcaaaaagtacgtcacctatgtgcaaaggtgag |
5722471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 181 - 348
Target Start/End: Complemental strand, 5670524 - 5670357
Alignment:
| Q |
181 |
aatgtggtgttattgtcgattgacatacatgcctatgtcttacttgtacgggaagaggtttgtgggtcgaatcacaccactcatcttacagttgagagaa |
280 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||| ||| ||||||||||||||| ||||||||||| |
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|
| T |
5670524 |
aatgttgtgttattgtcgattggtatacatgcctatgtcttacttgtatgggaagaggtttgtcggtccaataacaccactcatcttaaagttgagagaa |
5670425 |
T |
|
| Q |
281 |
gaaattcataatcaaccttacgaaaaagttgattggtcaaaatcacgtcaccaatgtgcaaaggtgag |
348 |
Q |
| |
|
||| | | || ||| ||| ||||||||| ||||| |||| ||| || | ||||||||||||||| |
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|
| T |
5670424 |
gaactccttacagaacattatgaaaaagttaattggcaaaaagtacgccatctatgtgcaaaggtgag |
5670357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 181 - 348
Target Start/End: Complemental strand, 5692298 - 5692131
Alignment:
| Q |
181 |
aatgtggtgttattgtcgattgacatacatgcctatgtcttacttgtacgggaagaggtttgtgggtcgaatcacaccactcatcttacagttgagagaa |
280 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||||||| || ||||||||||| |||| |||||||||| | | |||| ||||||||||| |
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|
| T |
5692298 |
aatgttgtgttattgtcgattggtatacatgcctatgtcttacttgtatggaaagaggtttgtcggtccaatcacaccattgaccttaaagttgagagaa |
5692199 |
T |
|
| Q |
281 |
gaaattcataatcaaccttacgaaaaagttgattggtcaaaatcacgtcaccaatgtgcaaaggtgag |
348 |
Q |
| |
|
||| | | || ||||||| ||||||||| ||||| |||| ||| || | ||||||||||||||| |
|
|
| T |
5692198 |
gaactccttacagaaccttatgaaaaagttaattggcaaaaagtacgccatctatgtgcaaaggtgag |
5692131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 5670714 - 5670665
Alignment:
| Q |
20 |
gccccctgagttttggatcctaccttcatttcttcctatgcatccaggtt |
69 |
Q |
| |
|
|||||||||||||||||| || || |||||||||| || ||||||||||| |
|
|
| T |
5670714 |
gccccctgagttttggatgcttccctcatttcttcttaagcatccaggtt |
5670665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 259
Target Start/End: Complemental strand, 1942043 - 1941994
Alignment:
| Q |
210 |
tgcctatgtcttacttgtacgggaagaggtttgtgggtcgaatcacacca |
259 |
Q |
| |
|
|||| |||| |||||||||||| ||||||||||| |||| |||||||||| |
|
|
| T |
1942043 |
tgccaatgtgttacttgtacggaaagaggtttgttggtccaatcacacca |
1941994 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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