View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4260_low_3 (Length: 337)
Name: NF4260_low_3
Description: NF4260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4260_low_3 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-169; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 15 - 337
Target Start/End: Complemental strand, 16408507 - 16408184
Alignment:
| Q |
15 |
tcacaacatcaaaggttggttgaaaagtttcataatcttatgtgctattgaacatgcattttttcttgtttcaaagctggataacttttatttcat-att |
113 |
Q |
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| T |
16408507 |
tcacaacatcaaaggttggttgaaaagtttcataatcttatgtgctcttgaatatgcattttttcttgtttcaaagctggataacttttatttcattatt |
16408408 |
T |
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| Q |
114 |
tagacagggatgtaatagcattaacaaattattttccaaacatgctaaaaattgccaatttcatgaattgtcttattgaaacaacctcctctaacataac |
213 |
Q |
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| T |
16408407 |
tagacagggatgtaatagcattaacaaattattttccaaacatgctaaaaattgccaatttcatgaattgtcttattgaaactacctcctctaacataac |
16408308 |
T |
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| Q |
214 |
taaaattttatataggacttgttttaggctacgtataaaatggactcatggaaaaagtggccgatgttgaaccacaattttttaccttttgattaatgta |
313 |
Q |
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| T |
16408307 |
taaaattttatataggacttgttttaggctacgtataaaatggactcatggaaaaagtggccgatgttgaaccacaattttttacctttagattaatgta |
16408208 |
T |
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| Q |
314 |
atcatcacagttactatgcacctt |
337 |
Q |
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| T |
16408207 |
atcatcacagttactatgcacctt |
16408184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 15 - 239
Target Start/End: Original strand, 16334734 - 16334957
Alignment:
| Q |
15 |
tcacaacatcaaaggttggttgaaaagtttcataatcttatgtgctattgaacatgcattttttcttgtttcaaagctggataacttttatttcatattt |
114 |
Q |
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| T |
16334734 |
tcacaacatcacaggttggttgaaaagtttcataatcttatgtgctcttgaatatgcaattattttgctttcaaagttggataaattttatttcatattt |
16334833 |
T |
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| Q |
115 |
agacagggatgtaatagcattaacaaattattttccaaacatgctaaaaattgccaatttcatgaattgtcttattgaaacaacctcctctaacataact |
214 |
Q |
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| T |
16334834 |
aaacggggatgtaatagcattaagaaattatcttccaaacatgctaaaaattgcaaatttcatcaattgtcttatggtaactacctcctctgacataact |
16334933 |
T |
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| Q |
215 |
aaaattttatataggacttgtttta |
239 |
Q |
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| T |
16334934 |
-aaattttatataggacttgtttta |
16334957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 15 - 189
Target Start/End: Original strand, 16341818 - 16341994
Alignment:
| Q |
15 |
tcacaacatcaaaggttggttgaaaagtttcataatcttatgtgctattgaacatgcattttttcttgtttcaaagct--ggataacttttatttcatat |
112 |
Q |
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| T |
16341818 |
tcacaacatcgcaggttggttgaaaagttccataatcttaagtgctattgaatatgcattttttcttctttctaagtttcggataaattttatttcgtat |
16341917 |
T |
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| Q |
113 |
ttagacagggatgtaatagcattaacaaattattttccaaacatgctaaaaattgccaatttcatgaattgtcttat |
189 |
Q |
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| T |
16341918 |
tgaaacaacaatgtaatagctttaacaaatagtcttttaaacatgctccaaaatgccaatttcataaattgtcttat |
16341994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 189
Target Start/End: Original strand, 16332701 - 16332864
Alignment:
| Q |
27 |
aggttggttgaaaagtttcataatcttatgtgctattgaacatgcattttttcttgtttcaaagctg--gataacttttatttcatatttagacagggat |
124 |
Q |
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| T |
16332701 |
aggttggttaaaaagtatcataatcttaagttctcttgaataagaattatttcttcttttaaagtttcagataaattttatttcatattaa-acagggtt |
16332799 |
T |
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| Q |
125 |
gtaatagcattaacaaattattttccaaacatgctaaaaattgccaatttcatgaattgtcttat |
189 |
Q |
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| T |
16332800 |
gtaatataattaacaaatggtcttccaaacatgctcaaaaatatcaatttcatcatttgtcttat |
16332864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 322
Target Start/End: Complemental strand, 37954574 - 37954497
Alignment:
| Q |
245 |
cgtataaaatggactcatggaaaaagtggccgatgttgaaccacaattttttaccttttgattaatgtaatcatcaca |
322 |
Q |
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| T |
37954574 |
cgtataaaatggactcgtagaaaaaattgtccatactgaaccaatattatttaccttttgattaatctaatcatcaca |
37954497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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