View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4260_low_4 (Length: 286)
Name: NF4260_low_4
Description: NF4260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4260_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 1657513 - 1657277
Alignment:
| Q |
17 |
atgaactgtatcaccaaaccacataaataacccacgttagtctgtaaatatagtgtgttttataatgagtgcaaacatacaaggttgattcttgttttga |
116 |
Q |
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| T |
1657513 |
atgaactgtatcaccaaaccacataaataacccacgttagtctgtaaata--gtgtgttttataatgagtgcaaacatacaaggttgattcttgttttga |
1657416 |
T |
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| Q |
117 |
ctgnnnnnnntagtaaagaatatgatttttagagttgtaaaaataaacgatgtatcactattaactcaataattggtcccattgaagacccaaaaggcct |
216 |
Q |
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| T |
1657415 |
ctgaaaaaaatagtaaagaatatgatttttagagttgtaaaaataaacgatgtatcactattaactcaataattggtcccattgaagacccaaaaggcct |
1657316 |
T |
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| Q |
217 |
aaactctttagacaccttaagcacttgccaaaagggagg |
255 |
Q |
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| T |
1657315 |
aaactctttagataccttaagcacttgccaaaagggagg |
1657277 |
T |
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