View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4260_low_6 (Length: 249)
Name: NF4260_low_6
Description: NF4260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4260_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 32272510 - 32272268
Alignment:
| Q |
1 |
aatggtcccgaggagagagaacaaacatcggatgataaagataatataatttaaaactcgcaaaccttataaacatgttgtgtctgtgtctagatccgtg |
100 |
Q |
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| T |
32272510 |
aatggtcccgaggagagagaacaaacatcggatgagaaagataatataatttaaaacttgcaaaccttataaacatgttgtgtctgtgtctagatccgtg |
32272411 |
T |
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| Q |
101 |
tcaagaaacatttcgcttttataaattatattattttcatgttcattaaattattcaattttggtcttaaccaataataagcatttcaaagtaatataca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32272410 |
tcaagaaacatttcgcttttataaattatattattttcatgttca-taaattattcaattttggtcttaaccaataataagcatttcaaagtaatataca |
32272312 |
T |
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| Q |
201 |
ttgtttatatgtatgaattattttgattttgatcttcatctcac |
244 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32272311 |
ttgtttatatgtatgaattattttgattttgatcttcatgtcac |
32272268 |
T |
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