View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4261_high_12 (Length: 240)

Name: NF4261_high_12
Description: NF4261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4261_high_12
NF4261_high_12
[»] chr4 (11 HSPs)
chr4 (5-223)||(8041281-8041499)
chr4 (1-221)||(8416703-8416923)
chr4 (19-223)||(8035881-8036085)
chr4 (21-223)||(8411099-8411301)
chr4 (21-223)||(9138481-9138683)
chr4 (1-221)||(8359027-8359247)
chr4 (47-219)||(8356024-8356196)
chr4 (20-161)||(8404113-8404254)
chr4 (45-219)||(43144381-43144555)
chr4 (45-202)||(9576915-9577072)
chr4 (142-223)||(8354614-8354695)
[»] chr2 (2 HSPs)
chr2 (20-223)||(33084251-33084454)
chr2 (100-223)||(24845330-24845452)
[»] chr7 (1 HSPs)
chr7 (20-216)||(5476606-5476802)


Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 5 - 223
Target Start/End: Original strand, 8041281 - 8041499
Alignment:
Q  5 cagctgatacataggatatagtcaaattggataatgtctgattagatatgcagaggacttgtgcatcctcaatcaaaatacaaccatcgagaaccaaagt 104  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| | ||||||||||||| |    
T  8041281 cagctgatacataggttatagtcaaattggataatgtctgattagatatgcagaggacttgtgcatcctcaatcaaagaacagctatcgagaaccaaaat 8041380  T
Q  105 attcaacacgtgacagtttggaaaagggtcagcacaatgattgtgagttgcaacaaatctgaaaaaattaagatgcaaggttcttaatgcaggtaagtga 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8041381 attcaacacgtgacagtttggaaaagggtcagcacaatgattgtgagttgcaacaaatctgaaaaaattaagatgcaaggttcttaatgcaggtaagtga 8041480  T
Q  205 agagattttggacactttg 223  Q
    |||||||||||||||||||    
T  8041481 agagattttggacactttg 8041499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 8416923 - 8416703
Alignment:
Q  1 tggtcagctgatacataggatatagtcaaattggataatgtctgattagatatgcagaggacttgtgcatcctcaatcaaaatacaaccatcgagaacca 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||  || |||||    
T  8416923 tggtcagctgatacgtaggatatagtcaaattggataatgtctgattagatatgcagaggacttgtgcatcctcaatcaaagaacaaccactgataacca 8416824  T
Q  101 aagtattcaacacgtgacagtttggaaaagggtcagcacaatgattgtgagttgcaacaaatctgaaaaaattaagatgcaaggttcttaatgcaggtaa 200  Q
    ||||||||| ||| |||||||||| ||| || ||||||||||||| |||||||||||||||  | ||||| |||||||||||||||||||||||||||||    
T  8416823 aagtattcagcacatgacagtttgaaaagggctcagcacaatgatcgtgagttgcaacaaagttaaaaaatttaagatgcaaggttcttaatgcaggtaa 8416724  T
Q  201 gtgaagagattttggacactt 221  Q
    |||||||||||||||||||||    
T  8416723 gtgaagagattttggacactt 8416703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 8035881 - 8036085
Alignment:
Q  19 gatatagtcaaattggataatgtctgattagatatgcagaggacttgtgcatcctcaatcaaaatacaaccatcgagaaccaaagtattcaacacgtgac 118  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||| | ||||||||||||| |||||||||| ||||    
T  8035881 gatatagtcaaattggatagtgtctgattagatatgcagaggacttgtgcatcctcaatcaaagaacagctatcgagaaccaaaatattcaacacatgac 8035980  T
Q  119 agtttggaaaagggtcagcacaatgattgtgagttgcaacaaatctgaaaaaattaagatgcaaggttcttaatgcaggtaagtgaagagattttggaca 218  Q
    ||||| |||| ||||||||||||||||||||||||||||||||  ||||| | |||||||||||||||||||||||||| ||||||||||||||||||||    
T  8035981 agttttgaaaggggtcagcacaatgattgtgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattttggaca 8036080  T
Q  219 ctttg 223  Q
    |||||    
T  8036081 ctttg 8036085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 21 - 223
Target Start/End: Complemental strand, 8411301 - 8411099
Alignment:
Q  21 tatagtcaaattggataatgtctgattagatatgcagaggacttgtgcatcctcaatcaaaatacaaccatcgagaaccaaagtattcaacacgtgacag 120  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||  ||||     ||| |||||||| |||| ||| |||||     
T  8411301 tatagtcaaactggataatgtctgattagatatgcagaggacttgtgcatcttcaatcaaagaacaatacctgagcaccaaagtcttcagcacatgacat 8411202  T
Q  121 tttggaaaagggtcagcacaatgattgtgagttgcaacaaatctgaaaaaattaagatgcaaggttcttaatgcaggtaagtgaagagattttggacact 220  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8411201 tttggaaaagggtcagcacaatgattgtgagttgcaacaaagttgaaaaatttaagatgcaaggttcttaatgcaggtaagtgaagagattttggacact 8411102  T
Q  221 ttg 223  Q
    |||    
T  8411101 ttg 8411099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 21 - 223
Target Start/End: Original strand, 9138481 - 9138683
Alignment:
Q  21 tatagtcaaattggataatgtctgattagatatgcagaggacttgtgcatcctcaatcaaaatacaaccatcgagaaccaaagtattcaacacgtgacag 120  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||| ||  ||||||||||||||||||||||||||||    
T  9138481 tatagtcaaattggatagtgtctgattagatatgcagaggacttgtgcatcctcaatcaaagaacaagcaatgagaaccaaagtattcaacacgtgacag 9138580  T
Q  121 tttggaaaagggtcagcacaatgattgtgagttgcaacaaatctgaaaaaattaagatgcaaggttcttaatgcaggtaagtgaagagattttggacact 220  Q
    |||||||| ||||||||||| |||| |||||||||||||||   |||  | | ||||||||||||||||||||| |||| ||||||||||||||||||||    
T  9138581 tttggaaaggggtcagcacagtgatcgtgagttgcaacaaagtggaaccattgaagatgcaaggttcttaatgctggtatgtgaagagattttggacact 9138680  T
Q  221 ttg 223  Q
    |||    
T  9138681 ttg 9138683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 8359027 - 8359247
Alignment:
Q  1 tggtcagctgatacataggatatagtcaaattggataatgtctgattagatatgcagaggacttgtgcatcctcaatcaaaatacaaccatcgagaacca 100  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||  ||||   | |||   ||    
T  8359027 tggtcagctaatacgtaggatatagtcaaattggataatgtctgattagatatgcagaggatttgtgcatcatcaatcaaagaacaatacttgagctgca 8359126  T
Q  101 aagtattcaacacgtgacagtttggaaaagggtcagcacaatgattgtgagttgcaacaaatctgaaaaaattaagatgcaaggttcttaatgcaggtaa 200  Q
    |||| |||||||| |||||||||| ||| ||||||||||| |||| |||||||| ||||||  ||||  | |||||||||||||||||||||||||| |     
T  8359127 aagtgttcaacacatgacagtttgaaaaggggtcagcacagtgatagtgagttgtaacaaagttgaagcatttaagatgcaaggttcttaatgcaggcag 8359226  T
Q  201 gtgaagagattttggacactt 221  Q
    |||||||||||||||||||||    
T  8359227 gtgaagagattttggacactt 8359247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 47 - 219
Target Start/End: Original strand, 8356024 - 8356196
Alignment:
Q  47 tagatatgcagaggacttgtgcatcctcaatcaaaatacaaccatcgagaaccaaagtattcaacacgtgacagtttggaaaagggtcagcacaatgatt 146  Q
    |||||||||| ||||||||||| |||||||||||  ||||| |||| || ||||||||||| ||| | |||||||||| ||||||||| ||| | ||||     
T  8356024 tagatatgcaaaggacttgtgcgtcctcaatcaatttacaatcatcaagtaccaaagtatttaactcatgacagtttgaaaaagggtcggcatagtgatg 8356123  T
Q  147 gtgagttgcaacaaatctgaaaaaattaagatgcaaggttcttaatgcaggtaagtgaagagattttggacac 219  Q
    |||||||||||||||  ||| | | |  |||||||| |||||||||||||| || ||||||||||||||||||    
T  8356124 gtgagttgcaacaaagttgacacattcgagatgcaaagttcttaatgcaggaaattgaagagattttggacac 8356196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 8404254 - 8404113
Alignment:
Q  20 atatagtcaaattggataatgtctgattagatatgcagaggacttgtgcatcctcaatcaaaatacaaccatcgagaaccaaagtattcaacacgtgaca 119  Q
    ||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||  ||||     ||| ||||||||||||||| | |||      
T  8404254 atatagtcaaactggacagtgtctgattagatatgcagaggacttgtgcatcctcaatcaaatcacaaaacctgagcaccaaagtattcaacgcatgaag 8404155  T
Q  120 gtttggaaaagggtcagcacaatgattgtgagttgcaacaaa 161  Q
    ||||| ||| || ||| || | |||| |||||||||||||||    
T  8404154 gtttgaaaagggatcaacatagtgatcgtgagttgcaacaaa 8404113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 45 - 219
Target Start/End: Original strand, 43144381 - 43144555
Alignment:
Q  45 attagatatgcagaggacttgtgcatcctcaatcaaaatacaaccatcgagaaccaaagtattcaacacgtgacagtttggaaaagggtcagcacaatga 144  Q
    |||||||||||| ||||||| |||||||| |||||||  |||| |    || |||||| |||| ||| | |||||||||| ||||||||||||| | |||    
T  43144381 attagatatgcaaaggacttttgcatcctgaatcaaagaacaatccctaagtaccaaattatttaactcatgacagtttgaaaaagggtcagcatagtga 43144480  T
Q  145 ttgtgagttgcaacaaatctgaaaaaattaagatgcaaggttcttaatgcaggtaagtgaagagattttggacac 219  Q
    | ||| |||||||||||  ||| | | || |||| ||| |||||||||||||| ||| | |||||||||||||||    
T  43144481 tggtgtgttgcaacaaagttgacatatttgagatacaaagttcttaatgcaggcaagcgtagagattttggacac 43144555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 45 - 202
Target Start/End: Original strand, 9576915 - 9577072
Alignment:
Q  45 attagatatgcagaggacttgtgcatcctcaatcaaaatacaaccatcgagaaccaaagtattcaacacgtgacagtttggaaaagggtcagcacaatga 144  Q
    |||||||||||||||||||||||  |||| |||||||  ||||  | |||| ||||| |||||||||||| ||||||| | ||| || |||||||| |||    
T  9576915 attagatatgcagaggacttgtgtttccttaatcaaacaacaataaccgagcaccaatgtattcaacacgagacagttcgaaaagggatcagcacagtga 9577014  T
Q  145 ttgtgagttgcaacaaatctgaaaaaattaagatgcaaggttcttaatgcaggtaagt 202  Q
     ||| ||||||| ||||   |||  | | |||||||||||||||||||||||| ||||    
T  9577015 ctgttagttgcagcaaagtagaagtattcaagatgcaaggttcttaatgcaggcaagt 9577072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 142 - 223
Target Start/End: Original strand, 8354614 - 8354695
Alignment:
Q  142 tgattgtgagttgcaacaaatctgaaaaaattaagatgcaaggttcttaatgcaggtaagtgaagagattttggacactttg 223  Q
    |||| |||||||||||||||  ||| | | || |||||||||||||||| |||||| |||||||||||||||||||||||||    
T  8354614 tgatggtgagttgcaacaaagttgacacatttgagatgcaaggttcttactgcaggcaagtgaagagattttggacactttg 8354695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 144; Significance: 8e-76; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 33084454 - 33084251
Alignment:
Q  20 atatagtcaaattggataatgtctgattagatatgcagaggacttgtgcatcctcaatcaaaatacaaccatcgagaaccaaagtattcaacacgtgaca 119  Q
    |||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||  |||||||  |||||||||||||||||||||||||||    
T  33084454 atatagtcaaattggatagtgtctgattagacatgtagaggacttgtgcatcctcaatcaaagaacaaccactgagaaccaaagtattcaacacgtgaca 33084355  T
Q  120 gtttggaaaagggtcagcacaatgattgtgagttgcaacaaatctgaaaaaattaagatgcaaggttcttaatgcaggtaagtgaagagattttggacac 219  Q
    ||||||||| ||||||||||||||||||||||||||||  ||  ||||||| | |||||||||||||||||||||||| |||||||||||||||||||||    
T  33084354 gtttggaaaggggtcagcacaatgattgtgagttgcaaagaagttgaaaaattgaagatgcaaggttcttaatgcaggcaagtgaagagattttggacac 33084255  T
Q  220 tttg 223  Q
    ||||    
T  33084254 tttg 33084251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 100 - 223
Target Start/End: Complemental strand, 24845452 - 24845330
Alignment:
Q  100 aaagtattcaacacgtgacagtttggaaaagggtcagcacaatgattgtgagttgcaacaaatctgaaaaaattaagatgcaaggttcttaatgcaggta 199  Q
    |||||||| ||||| |||||||||| |||||| |||||| | |||| ||||||||| |||||  ||| | | || |||||||||||||||| |||||| |    
T  24845452 aaagtatttaacacatgacagtttgaaaaagg-tcagcatagtgatggtgagttgctacaaagttgacacatttgagatgcaaggttcttactgcaggca 24845354  T
Q  200 agtgaagagattttggacactttg 223  Q
    ||||||||||||||||||||||||    
T  24845353 agtgaagagattttggacactttg 24845330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 216
Target Start/End: Complemental strand, 5476802 - 5476606
Alignment:
Q  20 atatagtcaaattggataatgtctgattagatatgcagaggacttgtgcatcctcaatcaaaatacaaccatcgagaaccaaagtattcaacacgtgaca 119  Q
    |||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||  |||||    ||| ||||||||||||||| | |||      
T  5476802 atatagtcaaattggacagtgtctgattagatatgcagaggactagtgcatcctcaatcaaataacaacacctgagcaccaaagtattcaacgcatgaag 5476703  T
Q  120 gtttggaaaagggtcagcacaatgattgtgagttgcaacaaatctgaaaaaattaagatgcaaggttcttaatgcaggtaagtgaagagattttgga 216  Q
    ||||| ||| || ||| || | |||| | |||||||||||||  |||   | | |||||| || |||||||||||||| || || ||||||||||||    
T  5476702 gtttgaaaagggatcaacatagtgatcgcgagttgcaacaaagttgacgtattcaagatgtaaagttcttaatgcaggcaaatgtagagattttgga 5476606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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