View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4261_high_3 (Length: 375)

Name: NF4261_high_3
Description: NF4261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4261_high_3
NF4261_high_3
[»] chr7 (6 HSPs)
chr7 (178-375)||(4501723-4501920)
chr7 (17-187)||(4502011-4502181)
chr7 (292-374)||(5827720-5827802)
chr7 (294-374)||(32585613-32585693)
chr7 (292-374)||(24528056-24528138)
chr7 (336-374)||(10905569-10905607)
[»] chr2 (9 HSPs)
chr2 (292-374)||(4412625-4412707)
chr2 (292-374)||(41867467-41867549)
chr2 (292-374)||(44686883-44686965)
chr2 (292-374)||(9684974-9685056)
chr2 (292-374)||(20142299-20142381)
chr2 (292-361)||(18744577-18744646)
chr2 (292-371)||(19161385-19161464)
chr2 (292-374)||(17345104-17345186)
chr2 (303-375)||(28225465-28225537)
[»] chr5 (8 HSPs)
chr5 (292-374)||(15291582-15291664)
chr5 (292-374)||(433758-433840)
chr5 (291-374)||(27337159-27337242)
chr5 (292-374)||(25662876-25662958)
chr5 (292-374)||(3113725-3113807)
chr5 (291-374)||(32269351-32269434)
chr5 (292-334)||(6534122-6534164)
chr5 (322-374)||(35456228-35456280)
[»] chr1 (8 HSPs)
chr1 (292-374)||(19035893-19035975)
chr1 (292-375)||(28040686-28040769)
chr1 (292-374)||(38732049-38732131)
chr1 (306-374)||(37200721-37200789)
chr1 (292-375)||(7794474-7794557)
chr1 (292-374)||(34645032-34645114)
chr1 (335-372)||(22375187-22375224)
chr1 (291-371)||(15585329-15585409)
[»] chr3 (7 HSPs)
chr3 (292-372)||(53786176-53786256)
chr3 (292-375)||(52411461-52411544)
chr3 (292-375)||(29862262-29862346)
chr3 (292-374)||(49018418-49018500)
chr3 (312-370)||(35236598-35236656)
chr3 (322-373)||(7501728-7501779)
chr3 (327-374)||(52741121-52741168)
[»] chr8 (7 HSPs)
chr8 (292-374)||(500693-500775)
chr8 (296-374)||(37517555-37517633)
chr8 (292-374)||(39435133-39435215)
chr8 (292-374)||(24125494-24125575)
chr8 (292-374)||(4006999-4007084)
chr8 (311-374)||(10556106-10556169)
chr8 (292-375)||(42921689-42921772)
[»] chr6 (8 HSPs)
chr6 (298-374)||(4206161-4206237)
chr6 (296-374)||(45232-45310)
chr6 (296-375)||(34304962-34305041)
chr6 (292-373)||(29337645-29337726)
chr6 (292-375)||(8374857-8374940)
chr6 (295-374)||(23910852-23910931)
chr6 (303-360)||(26225242-26225299)
chr6 (319-371)||(12401795-12401847)
[»] scaffold0186 (1 HSPs)
scaffold0186 (292-371)||(20190-20269)
[»] chr4 (4 HSPs)
chr4 (311-374)||(56461692-56461755)
chr4 (292-374)||(48505757-48505839)
chr4 (292-374)||(53170964-53171046)
chr4 (292-374)||(16958002-16958083)


Alignment Details
Target: chr7 (Bit Score: 146; Significance: 8e-77; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 178 - 375
Target Start/End: Complemental strand, 4501920 - 4501723
Alignment:
Q  178 tatagatataaagcaatcaaccgataaaatgttaaaattgttaagccgtacataatgattggaatttaaacctcagtctttttacttgtgcgtgagtttc 277  Q
    |||| |||||||||   |||||| ||||||||| | |||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||    
T  4501920 tatatatataaagctgccaaccggtaaaatgttgatattgttaagccgtacatcgtgattggaatttaaacctcagtctttttatttgtgcgtgagtttc 4501821  T
Q  278 aataattatttcattagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccat 375  Q
    ||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4501820 aataactatttcattagctatcccgattgatatgttaggtcagcatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccat 4501723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 17 - 187
Target Start/End: Complemental strand, 4502181 - 4502011
Alignment:
Q  17 aaaattcacattcaactagattgaactttcagatagtgatcaattcaatcaaacgaaagtggccaaatcccttggactaagacactcgccaattcaataa 116  Q
    |||| ||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  4502181 aaaaatcacattcatctagattgaactttcggatagtgatcaattcaatcaaacggaagtggccaaatcccttggactaagacacttgccaattcaataa 4502082  T
Q  117 tggtacgaaaatctcaatttaatgtggtctttatcactgaattaatcatacgtcatagatgtatagatata 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  4502081 tggtacgaaaatctcaatttaatgtggtctttatcactgaattaatcatacgtcatagatgcatatatata 4502011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 292 - 374
Target Start/End: Complemental strand, 5827802 - 5827720
Alignment:
Q  292 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattcca 374  Q
    |||||||||| ||||||| |||||||||| ||||||||||| ||||||| |||||||||||| ||||||||||||||||||||    
T  5827802 tagctatcccaattgatgggttaggtcagcatatgtcaccagtggagtaccgtactatccttcgatatcgtcttatgattcca 5827720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 294 - 374
Target Start/End: Complemental strand, 32585693 - 32585613
Alignment:
Q  294 gctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattcca 374  Q
    ||||||| ||||||||  ||| ||||| |||||||||||||| |||| |||||||||||||||| ||||||||||||||||    
T  32585693 gctatcctgattgatggattatgtcagcatatgtcaccaatgaagtaccgtactatccttagatttcgtcttatgattcca 32585613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 292 - 374
Target Start/End: Complemental strand, 24528138 - 24528056
Alignment:
Q  292 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattcca 374  Q
    ||||||||  |||||||| |||||| ||  ||||||||||| ||||||||| ||||||| |||||||||| ||||||||||||    
T  24528138 tagctatcatgattgatgggttaggacaacatatgtcaccagtggagtatcatactatcattagatatcgccttatgattcca 24528056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 336 - 374
Target Start/End: Complemental strand, 10905607 - 10905569
Alignment:
Q  336 gagtatcgtactatccttagatatcgtcttatgattcca 374  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  10905607 gagtatcgtactatccttagatatcatcttatgattcca 10905569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 292 - 374
Target Start/End: Original strand, 4412625 - 4412707
Alignment:
Q  292 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattcca 374  Q
    |||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  4412625 tagctatcccgattgatgagttaggtcagcatatgtcaccagtggagtatcgtactatccttagatatcgtcttatgattcca 4412707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 292 - 374
Target Start/End: Original strand, 41867467 - 41867549
Alignment:
Q  292 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattcca 374  Q
    |||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  41867467 tagctatcccgattgatgggttaggtcagcatatgtcaccagtggagtatcgtactatccttagatatcgtcttatgattcca 41867549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 292 - 374
Target Start/End: Complemental strand, 44686965 - 44686883
Alignment:
Q  292 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattcca 374  Q
    |||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  44686965 tagctatctcaattgatgggttaggtcagtatatgtcaccaatggagtatcgtactatccttcgatatcgtcttatgattcca 44686883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 292 - 374
Target Start/End: Original strand, 9684974 - 9685056
Alignment:
Q  292 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattcca 374  Q
    |||||||||| ||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||| |||| |||||||    
T  9684974 tagctatccctattgatgggttaggtcagcatatgtcaccagtggagtatcgtactatccttagatatcgccttacgattcca 9685056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 292 - 374
Target Start/End: Original strand, 20142299 - 20142381
Alignment:
Q  292 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattcca 374  Q
    |||||||||||||||||| |||| ||||| |||||||| || |||||||| ||||||||||||||||||| ||||||||||||    
T  20142299 tagctatcccgattgatgggttaagtcagcatatgtcaacagtggagtattgtactatccttagatatcgccttatgattcca 20142381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 292 - 361
Target Start/End: Original strand, 18744577 - 18744646
Alignment:
Q  292 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcg 361  Q
    |||||||||||||||||| ||||||| || ||||||||||| ||||||||||||||||||||||||||||    
T  18744577 tagctatcccgattgatgggttaggttagcatatgtcaccagtggagtatcgtactatccttagatatcg 18744646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 292 - 371
Target Start/End: Original strand, 19161385 - 19161464
Alignment:
Q  292 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgatt 371  Q
    ||||||||| |||||||  |||||||||| |||||||| || ||||||||||||||||| ||||||||||||||||||||    
T  19161385 tagctatcctgattgataggttaggtcagcatatgtcatcagtggagtatcgtactatcattagatatcgtcttatgatt 19161464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 292 - 374
Target Start/End: Complemental strand, 17345186 - 17345104
Alignment:
Q  292 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattcca 374  Q
    |||||||||| ||||||| |||||||| | ||||||||| | |||||||||||||||||||||||||||| ||||||| ||||    
T  17345186 tagctatcccaattgatgggttaggtcggcatatgtcactagtggagtatcgtactatccttagatatcgccttatgaatcca 17345104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 303 - 375
Target Start/End: Complemental strand, 28225537 - 28225465
Alignment:
Q  303 attgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccat 375  Q
    ||||||| ||||| |||| |||||||||||  |||||| |||||||||| | |||||| ||||||||||||||    
T  28225537 attgatgggttagatcagcatatgtcaccagcggagtaccgtactatccgtcgatatcatcttatgattccat 28225465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 292 - 374
Target Start/End: Original strand, 15291582 - 15291664
Alignment:
Q  292 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattcca 374  Q
    |||||||||| ||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  15291582 tagctatcccaattgatgggttaggtcagcatatgtcaccagtggagtatcgtactatccttagatatcgtcgtatgattcca 15291664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 292 - 374
Target Start/End: Complemental strand, 433840 - 433758
Alignment:
Q  292 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattcca 374  Q
    |||||||||| ||||||| |||||| ||| ||||||||||||| |||||||| ||||||||| ||||||||||||||||||||    
T  433840 tagctatcccaattgatgggttaggccagcatatgtcaccaattgagtatcggactatccttcgatatcgtcttatgattcca 433758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 291 - 374
Target Start/End: Complemental strand, 27337242 - 27337159
Alignment:
Q  291 ttagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattcca 374  Q
    ||||||||||| ||||||| ||||||| || ||||||||||| | ||||| |||||||||||| ||||||||||||||||||||    
T  27337242 ttagctatcccaattgatgggttaggttagcatatgtcaccagttgagtaccgtactatccttcgatatcgtcttatgattcca 27337159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 292 - 374
Target Start/End: Original strand, 25662876 - 25662958
Alignment:
Q  292 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattcca 374  Q
    |||||||||| ||||||| ||| |||||| ||||||||||| |||| || |||||||||||| ||||||||||||||||||||    
T  25662876 tagctatcccaattgatgggttgggtcagcatatgtcaccagtggaataccgtactatccttcgatatcgtcttatgattcca 25662958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 292 - 374
Target Start/End: Original strand, 3113725 - 3113807
Alignment:
Q  292 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattcca 374  Q
    ||||||||||||||||||  ||||||||| ||| ||||  | |||||||||||||||||||||||||| | ||||||||||||    
T  3113725 tagctatcccgattgatgatttaggtcagcataggtcattagtggagtatcgtactatccttagatattgccttatgattcca 3113807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 291 - 374
Target Start/End: Original strand, 32269351 - 32269434
Alignment:
Q  291 ttagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattcca 374  Q
    |||||||||| |||||||| |||||||||| |||||| || | || |||||  |||||||||| ||||| ||||||||||||||    
T  32269351 ttagctatcctgattgatgggttaggtcaggatatgttactagtgaagtattatactatccttggatattgtcttatgattcca 32269434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 334
Target Start/End: Original strand, 6534122 - 6534164
Alignment:
Q  292 tagctatcccgattgatgtgttaggtcagtatatgtcaccaat 334  Q
    ||||||||| |||||||| |||||||||| |||||||||||||    
T  6534122 tagctatcctgattgatgggttaggtcagcatatgtcaccaat 6534164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 374
Target Start/End: Complemental strand, 35456280 - 35456228
Alignment:
Q  322 atatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattcca 374  Q
    ||||||||| || |||||| | |||||||||||||||||  ||||||||||||    
T  35456280 atatgtcacaaacggagtaccatactatccttagatatcaccttatgattcca 35456228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 292 - 374
Target Start/End: Complemental strand, 19035975 - 19035893
Alignment:
Q  292 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattcca 374  Q
    |||||||||||||||||| |||||||||  ||||||||||| ||||||||| |||||||||||||||||| ||||||||||||    
T  19035975 tagctatcccgattgatgagttaggtcaacatatgtcaccagtggagtatcatactatccttagatatcgccttatgattcca 19035893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 292 - 375
Target Start/End: Original strand, 28040686 - 28040769
Alignment:
Q  292 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccat 375  Q
    |||||||||||||||||  |||||||||  ||||||||||| ||||||||| |||||||||||||||||| |||||||||||||    
T  28040686 tagctatcccgattgattggttaggtcaacatatgtcaccagtggagtatcatactatccttagatatcgccttatgattccat 28040769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 292 - 374
Target Start/End: Complemental strand, 38732131 - 38732049
Alignment:
Q  292 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattcca 374  Q
    ||||||||| ||| |||| |||  ||||| |||||||| || ||||||| |||||||||||||||||||| ||||||||||||    
T  38732131 tagctatcctgatggatgggttgtgtcagcatatgtcatcagtggagtaccgtactatccttagatatcgccttatgattcca 38732049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 306 - 374
Target Start/End: Complemental strand, 37200789 - 37200721
Alignment:
Q  306 gatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattcca 374  Q
    |||| |||||||||| ||||||||| | ||||||||| |||||||||||||||||| ||||| ||||||    
T  37200789 gatgggttaggtcagcatatgtcactagtggagtatcatactatccttagatatcgccttataattcca 37200721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 292 - 375
Target Start/End: Original strand, 7794474 - 7794557
Alignment:
Q  292 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccat 375  Q
    |||||||||  ||||||| |||||||||  |||| |||||| ||||||| | | |||||||| ||||||| |||||||||||||    
T  7794474 tagctatccttattgatgggttaggtcaacatatatcaccagtggagtaccatgctatcctttgatatcgccttatgattccat 7794557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 374
Target Start/End: Complemental strand, 34645114 - 34645032
Alignment:
Q  292 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattcca 374  Q
    |||||||||  ||||||| || || |||| ||||||||| | || |||| |||| ||||||| ||||||||||||||||||||    
T  34645114 tagctatcctaattgatgggtaagatcagcatatgtcactagtgaagtaccgtattatccttcgatatcgtcttatgattcca 34645032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 372
Target Start/End: Complemental strand, 22375224 - 22375187
Alignment:
Q  335 ggagtatcgtactatccttagatatcgtcttatgattc 372  Q
    |||||| |||||||||||||||||||| ||||||||||    
T  22375224 ggagtaacgtactatccttagatatcgccttatgattc 22375187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 371
Target Start/End: Complemental strand, 15585409 - 15585329
Alignment:
Q  291 ttagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgatt 371  Q
    ||||||||||| ||||||| |||||| ||  ||||||||||| | |||||| |||||||| | |  |||||||| ||||||    
T  15585409 ttagctatccctattgatgggttaggccaaaatatgtcaccagtagagtattgtactatcatcaagtatcgtctcatgatt 15585329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 292 - 372
Target Start/End: Complemental strand, 53786256 - 53786176
Alignment:
Q  292 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattc 372  Q
    ||||||| | |||||||| |||||||||| ||||||||||| |||||||||||| ||||||||||||||| ||||||||||    
T  53786256 tagctattctgattgatgggttaggtcagcatatgtcaccagtggagtatcgtattatccttagatatcgccttatgattc 53786176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 292 - 375
Target Start/End: Original strand, 52411461 - 52411544
Alignment:
Q  292 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccat 375  Q
    |||||||||||||||||| |||| ||||| ||||||||| | ||||||||||| |||||||||||||||| ||| |||||||||    
T  52411461 tagctatcccgattgatgagttaagtcagcatatgtcacgagtggagtatcgtgctatccttagatatcgccttgtgattccat 52411544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 292 - 375
Target Start/End: Complemental strand, 29862346 - 29862262
Alignment:
Q  292 tagctatcccgattgatgtgttag-gtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccat 375  Q
    |||||||| ||||||||| ||||  ||||| ||||||||||| || |||| |||||||||||||||||||| |||||||||||||    
T  29862346 tagctatctcgattgatgggttaaagtcagcatatgtcaccagtgaagtagcgtactatccttagatatcgccttatgattccat 29862262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 292 - 374
Target Start/End: Complemental strand, 49018500 - 49018418
Alignment:
Q  292 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattcca 374  Q
    ||||||||| |||||||| ||||||||||   ||||||| | |||||||||| |||||| |||||||||| ||||||||||||    
T  49018500 tagctatcctgattgatgggttaggtcagcgcatgtcacaagtggagtatcgaactatcattagatatcgccttatgattcca 49018418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 312 - 370
Target Start/End: Complemental strand, 35236656 - 35236598
Alignment:
Q  312 ttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgat 370  Q
    ||||||||| ||||||||||| ||||||| | ||||||||||||||||||  |||||||    
T  35236656 ttaggtcagcatatgtcaccagtggagtaccatactatccttagatatcgctttatgat 35236598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 322 - 373
Target Start/End: Original strand, 7501728 - 7501779
Alignment:
Q  322 atatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattcc 373  Q
    |||||||| || ||||||| |||||||||||||||||||| ||||| |||||    
T  7501728 atatgtcatcagtggagtaccgtactatccttagatatcgccttataattcc 7501779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 327 - 374
Target Start/End: Original strand, 52741121 - 52741168
Alignment:
Q  327 tcaccaatggagtatcgtactatccttagatatcgtcttatgattcca 374  Q
    |||||| ||||||||| ||||||||||||||| | |||||||||||||    
T  52741121 tcaccagtggagtatcatactatccttagataccatcttatgattcca 52741168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 292 - 374
Target Start/End: Complemental strand, 500775 - 500693
Alignment:
Q  292 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattcca 374  Q
    |||| |||| |||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||| | |||| |||||||    
T  500775 tagcaatcctgattgatgagttaggtcagcatatgtcaccaatggagtaccgtactatccttagatattgccttacgattcca 500693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 296 - 374
Target Start/End: Complemental strand, 37517633 - 37517555
Alignment:
Q  296 tatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattcca 374  Q
    |||||||||||||| |||||||||  ||||||||||| ||||||||| || ||||||||||||||| ||||||||||||    
T  37517633 tatcccgattgatgggttaggtcaacatatgtcaccagtggagtatcataatatccttagatatcgccttatgattcca 37517555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 292 - 374
Target Start/End: Complemental strand, 39435215 - 39435133
Alignment:
Q  292 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattcca 374  Q
    |||||||||| ||||||| |||||||||| ||||||||| | | ||||| |||||||||||| ||||||||||||||||||||    
T  39435215 tagctatcccaattgatgggttaggtcagcatatgtcactagttgagtaccgtactatccttcgatatcgtcttatgattcca 39435133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 292 - 374
Target Start/End: Complemental strand, 24125575 - 24125494
Alignment:
Q  292 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattcca 374  Q
    |||||||||||||||||| |||||||||| |||||||| || ||||||| ||||||||||||| ||||||  |||||||||||    
T  24125575 tagctatcccgattgatgggttaggtcaggatatgtca-cagtggagtaccgtactatccttaaatatcgcattatgattcca 24125494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 292 - 374
Target Start/End: Original strand, 4006999 - 4007084
Alignment:
Q  292 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcg---tactatccttagatatcgtcttatgattcca 374  Q
    ||||||||| |||||||| |||| ||||| ||||||||  | ||||| | ||   || ||||||||||||||||||||||||||||    
T  4006999 tagctatcctgattgatgggttaagtcagcatatgtcattagtggaggaccgccgtattatccttagatatcgtcttatgattcca 4007084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 311 - 374
Target Start/End: Original strand, 10556106 - 10556169
Alignment:
Q  311 gttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattcca 374  Q
    ||||||||| |||||||||||  || | |||| || |||||||| |||||||||||||||||||    
T  10556106 gttaggtcaatatatgtcaccggtgaattatcatattatccttaaatatcgtcttatgattcca 10556169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 292 - 375
Target Start/End: Original strand, 42921689 - 42921772
Alignment:
Q  292 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccat 375  Q
    |||||||| ||| || || |||||||||| |||| |||  | ||||||||| ||||||  || |||||||||||||||||||||    
T  42921689 tagctatctcgaatggtgggttaggtcagcatatatcataagtggagtatcatactattattcgatatcgtcttatgattccat 42921772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 298 - 374
Target Start/End: Original strand, 4206161 - 4206237
Alignment:
Q  298 tcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattcca 374  Q
    |||||||||||| |||||||||| ||||||||||| ||||||| |||||||||||||||| ||| |||| |||||||    
T  4206161 tcccgattgatgggttaggtcagcatatgtcaccagtggagtaccgtactatccttagatctcgccttacgattcca 4206237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 296 - 374
Target Start/End: Original strand, 45232 - 45310
Alignment:
Q  296 tatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattcca 374  Q
    |||||||||||||| |||||||||| |||||||| |  ||||||||| |||||||||||||||||  ||||||||||||    
T  45232 tatcccgattgatgggttaggtcagcatatgtcatctgtggagtatcatactatccttagatatcaccttatgattcca 45310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 296 - 375
Target Start/End: Complemental strand, 34305041 - 34304962
Alignment:
Q  296 tatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccat 375  Q
    |||||| ||||||| |||| ||||| ||||||||||| ||||||| |||||||||||| ||||  |||||||||||||||    
T  34305041 tatcccaattgatgggttatgtcagcatatgtcaccagtggagtaccgtactatccttcgatactgtcttatgattccat 34304962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 292 - 373
Target Start/End: Original strand, 29337645 - 29337726
Alignment:
Q  292 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattcc 373  Q
    ||||||||| |||||||| |||||||||| |||| || | | || |||||| || ||||||||||||||| |||||||||||    
T  29337645 tagctatcctgattgatgggttaggtcagcatatttcgcaagtgaagtatcatattatccttagatatcgccttatgattcc 29337726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 292 - 375
Target Start/End: Original strand, 8374857 - 8374940
Alignment:
Q  292 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccat 375  Q
    |||||||||  ||||||| |||| | ||  ||||||||||||| ||||||||||||||||| | ||||||  ||||||||||||    
T  8374857 tagctatccttattgatgggttaagccaacatatgtcaccaatagagtatcgtactatcctcatatatcgcattatgattccat 8374940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 295 - 374
Target Start/End: Original strand, 23910852 - 23910931
Alignment:
Q  295 ctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattcca 374  Q
    ||||||| ||||||| ||||||| || ||||||||||| |||| ||| ||||| || ||| |||||| ||||||||||||    
T  23910852 ctatcccaattgatgagttaggttagcatatgtcaccagtggaatattgtactctctttaaatatcgccttatgattcca 23910931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 360
Target Start/End: Original strand, 26225242 - 26225299
Alignment:
Q  303 attgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatc 360  Q
    ||||||| |||||||||  ||||||||| | | ||||| |||||||||||||||||||    
T  26225242 attgatgagttaggtcaacatatgtcacaagtagagtaccgtactatccttagatatc 26225299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 371
Target Start/End: Complemental strand, 12401847 - 12401795
Alignment:
Q  319 agtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgatt 371  Q
    |||| ||||||||| ||||||| |||| ||| ||||||||| |||||||||||    
T  12401847 agtaaatgtcaccagtggagtaccgtattatgcttagatattgtcttatgatt 12401795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 292 - 371
Target Start/End: Complemental strand, 20269 - 20190
Alignment:
Q  292 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgatt 371  Q
    |||||||||| ||||||| |||||||||  |||||||| || |||||||| || |||||||||||||||  |||||||||    
T  20269 tagctatcccaattgatgggttaggtcaacatatgtcaacattggagtatggtgctatccttagatatcaccttatgatt 20190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 311 - 374
Target Start/End: Original strand, 56461692 - 56461755
Alignment:
Q  311 gttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattcca 374  Q
    |||||||||  |||| |||||||||||||||||||| ||||||||||||   ||||||||||||    
T  56461692 gttaggtcatcatatatcaccaatggagtatcgtaccatccttagatataaccttatgattcca 56461755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 374
Target Start/End: Original strand, 48505757 - 48505839
Alignment:
Q  292 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattcca 374  Q
    |||||||||  ||||||| ||||| |||  |||||| | |  |||||||||||| ||||||||||||||| ||||||||||||    
T  48505757 tagctatccatattgatgggttagatcaacatatgttatcggtggagtatcgtattatccttagatatcgccttatgattcca 48505839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 374
Target Start/End: Complemental strand, 53171046 - 53170964
Alignment:
Q  292 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattcca 374  Q
    |||||||||  ||||||| ||||| |||| |||| ||| || ||||||||||||||||| |||||||||  |||| |||||||    
T  53171046 tagctatcctaattgatgggttagttcagcatatatcatcagtggagtatcgtactatctttagatatcaccttacgattcca 53170964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 374
Target Start/End: Complemental strand, 16958083 - 16958002
Alignment:
Q  292 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattcca 374  Q
    |||||||||  ||||||| || ||| ||| ||||||||||| |||| ||  ||||||||||||||||| | ||||||||||||    
T  16958083 tagctatcctcattgatgggtaaggccagcatatgtcaccagtggattactgtactatccttagatat-gccttatgattcca 16958002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University