View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4261_high_6 (Length: 313)
Name: NF4261_high_6
Description: NF4261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4261_high_6 |
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| [»] scaffold0071 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 8 - 301
Target Start/End: Complemental strand, 27499855 - 27499562
Alignment:
| Q |
8 |
cgaagaatattgagcatctacaaatgaatcattcccttaattgggtaagaactatacttatatgaatcaacttcaaggatatgtgcaccattgccaacca |
107 |
Q |
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| T |
27499855 |
cgaataatattgagcatctacaaatgaatcattcccttaattgggtaggaactatacttatatgaatcaacttcaaggatatgtgcaccattgccaacta |
27499756 |
T |
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| Q |
108 |
aaaacaaacgtttctatttctatcctttcaatattaagctttgactacccataaccatggtaaaatcaagtgatgaaaactcttttgtagccaaatactt |
207 |
Q |
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| T |
27499755 |
aaaacaaacgtttctatttctatcatttcaatattaagctttgactacccataaccatggtaaaatcaagtgatgaaaactcttttgtagccaaatactt |
27499656 |
T |
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| Q |
208 |
gcaagatgatgacttaagccaagaatgcaaggagttgatacccaccttgccatcagaaaaagcatggattttaacccacacccatcaatctcaa |
301 |
Q |
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| T |
27499655 |
gcaagatgatgacttaagccaagaatgcaaggagttgatacccaccttgccatcagaaaaagcctggattttaacccacacctatcaatatcaa |
27499562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 260
Target Start/End: Original strand, 27504226 - 27504317
Alignment:
| Q |
169 |
aaaatcaagtgatgaaaactcttttgtagccaaatacttgcaagatgatgacttaagccaagaatgcaaggagttgatacccaccttgccat |
260 |
Q |
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| T |
27504226 |
aaaatcaagtgatgaaaaccctactctgccaaaatacttgaaagaagatgacttagggcaagaatgcaaggacttgatacaaaccttgccat |
27504317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 277
Target Start/End: Original strand, 27544041 - 27544091
Alignment:
| Q |
227 |
caagaatgcaaggagttgatacccaccttgccatcagaaaaagcatggatt |
277 |
Q |
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| T |
27544041 |
caagaatgcaaggagttgatatccacattgccattagaaaaaggatggatt |
27544091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 163 - 276
Target Start/End: Complemental strand, 11439730 - 11439617
Alignment:
| Q |
163 |
catggtaaaatcaagtgatgaaaactcttttgtagccaaatacttgcaagatgatgacttaagccaagaatgcaaggagttgatacccaccttgccatca |
262 |
Q |
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| T |
11439730 |
catggcaaaattaggtgatgaaaactctcttgtgccaaaatacttgcaagaagatgagttaggcaaagaatgcaaggagttaatacaaaccttaccatta |
11439631 |
T |
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| Q |
263 |
gaaaaagcatggat |
276 |
Q |
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| T |
11439630 |
gaaaaaggatggat |
11439617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 269
Target Start/End: Complemental strand, 11318117 - 11318048
Alignment:
| Q |
200 |
aaatacttgcaagatgatgacttaagccaagaatgcaaggagttgatacccaccttgccatcagaaaaag |
269 |
Q |
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| T |
11318117 |
aaatacatgcaagcagctgagttaggccaagaatgtaaggagttgatacccaccttgccattagaaaaag |
11318048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 15460309 - 15460357
Alignment:
| Q |
200 |
aaatacttgcaagatgatgacttaagccaagaatgcaaggagttgatac |
248 |
Q |
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| T |
15460309 |
aaatacttgcaagaagatgacataaccctagaatgcaaagagttgatac |
15460357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0071 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0071
Description:
Target: scaffold0071; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 248
Target Start/End: Complemental strand, 1883 - 1835
Alignment:
| Q |
200 |
aaatacttgcaagatgatgacttaagccaagaatgcaaggagttgatac |
248 |
Q |
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| T |
1883 |
aaatacttgcaagaagatgacataaccctagaatgcaaagagttgatac |
1835 |
T |
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