View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4261_high_8 (Length: 257)

Name: NF4261_high_8
Description: NF4261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4261_high_8
NF4261_high_8
[»] chr2 (19 HSPs)
chr2 (1-257)||(39215515-39215772)
chr2 (77-252)||(39369996-39370172)
chr2 (97-216)||(39192439-39192558)
chr2 (97-216)||(39198119-39198238)
chr2 (32-257)||(39161725-39161951)
chr2 (32-257)||(39207243-39207469)
chr2 (97-257)||(39222768-39222929)
chr2 (77-216)||(39414761-39414900)
chr2 (101-216)||(39468264-39468379)
chr2 (77-241)||(39389116-39389281)
chr2 (128-216)||(39137807-39137895)
chr2 (101-256)||(39397852-39398008)
chr2 (98-211)||(39473409-39473522)
chr2 (98-257)||(39459135-39459295)
chr2 (97-212)||(39381510-39381625)
chr2 (98-213)||(39421832-39421947)
chr2 (164-257)||(39152467-39152561)
chr2 (117-215)||(39494461-39494559)
chr2 (1-52)||(39222932-39222986)
[»] chr6 (1 HSPs)
chr6 (101-257)||(16113182-16113339)
[»] chr7 (1 HSPs)
chr7 (128-216)||(19807757-19807845)


Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 39215772 - 39215515
Alignment:
Q  1 tgaataagaacatttacccgattgtgtttcttcaatatattttttccttgacccaagcttcgtcggtcgtaaatcgaattttttcaactttaacttagga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39215772 tgaataagaacatttacccgattgtgtttcttcaatatattttttccttgacccaagcttcgtcggtcgtaaatcgaattttttcaactttaacttagga 39215673  T
Q  101 tccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctcttttaactcaagttctttccaccgtcctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39215672 tccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctcttttaactcaagttctttccaccgtcctt 39215573  T
Q  201 caaattgcttctc-tttgattcaaagctctcaacttggctttcaaattgcttcttttt 257  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  39215572 caaattgcttctcttttgattcaaagctctcaacttgtctttcaaattgcttcttttt 39215515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 77 - 252
Target Start/End: Complemental strand, 39370172 - 39369996
Alignment:
Q  77 aattttttcaactttaacttaggatccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctctttta 176  Q
    ||||| |||| |||| ||| | || |||||||||||| ||||||||||||||||||||| | ||||||||| ||||| ||| ||||||| ||||||||||    
T  39370172 aatttattcatctttgactcaagacccttgacttgtcttccaaactgcttctcttttaattcgaactccttcacctgcactatgaacttgttctctttta 39370073  T
Q  177 actcaagttctttccaccgtccttcaaattgcttctcttt-gattcaaagctctcaacttggctttcaaattgcttc 252  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||  |||  ||| |||||| ||||||||||||||    
T  39370072 actcaagttctttccaccgtccttcaaattgcttttctttcgatttgaagtgctcgacttgggtttcaaattgcttc 39369996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 97 - 216
Target Start/End: Original strand, 39192439 - 39192558
Alignment:
Q  97 aggatccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctcttttaactcaagttctttccaccgt 196  Q
    ||||||||||||| ||||| |||||||||| |||||||| |||| |||||| |||| | |||||||||||||||||||| ||||||||||  |||| |||    
T  39192439 aggatccttgactagtccttcaaactgcttttcttttaagttgagctccttcacctttgctttgaacttattctcttttgactcaagttcactccatcgt 39192538  T
Q  197 ccttcaaattgcttctcttt 216  Q
    ||||| ||||||||||||||    
T  39192539 ccttctaattgcttctcttt 39192558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 97 - 216
Target Start/End: Original strand, 39198119 - 39198238
Alignment:
Q  97 aggatccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctcttttaactcaagttctttccaccgt 196  Q
    ||||||||||||| ||||| |||||||||| |||||||| |||| |||||| |||| | |||||||||||||||||||| ||||||||||  |||| |||    
T  39198119 aggatccttgactagtccttcaaactgcttttcttttaagttgagctccttcacctttgctttgaacttattctcttttgactcaagttcactccatcgt 39198218  T
Q  197 ccttcaaattgcttctcttt 216  Q
    ||||| ||||||||||||||    
T  39198219 ccttctaattgcttctcttt 39198238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 32 - 257
Target Start/End: Complemental strand, 39161951 - 39161725
Alignment:
Q  32 tcaatatattttttccttgacccaagcttcgtcggtcgtaaatcgaattttttcaactttaacttaggatccttgacttgtcctccaaactgcttctctt 131  Q
    ||||||||||||||||||||| || ||| | |  || ||  ||| ||||| |||| |||| ||||||||||||||||||||||| |||| ||||| ||||    
T  39161951 tcaatatattttttccttgactcaggctcctttagttgtccatcaaatttattcatctttgacttaggatccttgacttgtccttcaaattgcttttctt 39161852  T
Q  132 ttaacttgaactcctttacctgtactttgaacttattctcttttaactcaagttctttccaccgtccttcaaattgcttct-ctttgattcaaagctctc 230  Q
    |||| |||| ||||||  | | |||||||| ||||| ||||||   ||| ||||| |||||||||||||||||||| ||||  |||||||  |||  |||    
T  39161851 ttaagttgagctccttctcatttactttgagcttatactctttcgtctccagttcattccaccgtccttcaaattgtttctgttttgatttgaagtcctc 39161752  T
Q  231 aacttggctttcaaattgcttcttttt 257  Q
    |||||| |||||||| ||||| |||||    
T  39161751 aacttgtctttcaaaatgcttattttt 39161725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 32 - 257
Target Start/End: Original strand, 39207243 - 39207469
Alignment:
Q  32 tcaatatattttttccttgacccaagcttcgtcggtcgtaaatcgaattttttcaactttaacttaggatccttgacttgtcctccaaactgcttctctt 131  Q
    ||||||||||||||||||||| || ||| | |  || ||  ||| ||||| |||| |||| ||||||||||||||||||||||| |||| ||||| ||||    
T  39207243 tcaatatattttttccttgactcaggctcctttagttgtccatcaaatttattcatctttgacttaggatccttgacttgtccttcaaattgcttttctt 39207342  T
Q  132 ttaacttgaactcctttacctgtactttgaacttattctcttttaactcaagttctttccaccgtccttcaaattgcttct-ctttgattcaaagctctc 230  Q
    |||| |||| ||||||  | | |||||||| ||||| ||||||   ||| ||||| |||||||||||||||||||| ||||  |||||||  |||  |||    
T  39207343 ttaagttgagctccttctcatttactttgagcttatactctttcgtctccagttcattccaccgtccttcaaattgtttctgttttgatttgaagtcctc 39207442  T
Q  231 aacttggctttcaaattgcttcttttt 257  Q
    |||||| |||||||| ||||| |||||    
T  39207443 aacttgtctttcaaaatgcttattttt 39207469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 97 - 257
Target Start/End: Complemental strand, 39222929 - 39222768
Alignment:
Q  97 aggatccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctcttttaactcaagttctttccaccgt 196  Q
    ||||||||||||||||||| |||||  ||| ||||| || |||| |||||| |||| | |||||||||||||||||| | |||||||||  ||||| |||    
T  39222929 aggatccttgacttgtccttcaaaccacttttctttgaagttgagctccttcacctttgctttgaacttattctcttctgactcaagtttattccatcgt 39222830  T
Q  197 ccttcaaattgcttctc-tttgattcaaagctctcaacttggctttcaaattgcttcttttt 257  Q
     |||||||||||||||| ||||||| |||   ||| ||||||||||| || |||||||||||    
T  39222829 tcttcaaattgcttctcttttgatttaaactcctcgacttggctttcgaaatgcttcttttt 39222768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 77 - 216
Target Start/End: Original strand, 39414761 - 39414900
Alignment:
Q  77 aattttttcaactttaacttaggatccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctctttta 176  Q
    ||||||| || |||| ||| ||||||||| ||||||||| ||||||| ||||| |||||||||| ||| || ||| ||| ||||||||||||||| |||     
T  39414761 aatttttccagctttgactcaggatccttaacttgtccttcaaactgtttctcatttaacttgagctctttgaccagtagtttgaacttattctcatttg 39414860  T
Q  177 actcaagttctttccaccgtccttcaaattgcttctcttt 216  Q
     ||  ||||||||||| ||| |||||||||||||||||||    
T  39414861 tcttgagttctttccatcgttcttcaaattgcttctcttt 39414900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 101 - 216
Target Start/End: Complemental strand, 39468379 - 39468264
Alignment:
Q  101 tccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctcttttaactcaagttctttccaccgtcctt 200  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||| |||| ||||||||||  |||||||||| |||  | |||||| |||||| | |    
T  39468379 tccttgacttgtccttcaatctgcttctcttttaacttgaactccttcacctttactttgaaccgattctcttttgacttcaattctttacaccgttcat 39468280  T
Q  201 caaattgcttctcttt 216  Q
    |||||||||| |||||    
T  39468279 caaattgcttatcttt 39468264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 77 - 241
Target Start/End: Original strand, 39389116 - 39389281
Alignment:
Q  77 aattttttcaactttaacttaggatccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctctttta 176  Q
    ||||| |||| |||| ||| |||||| |||||||| ||| |||||||||| |||||||| |||| |||||| |||| |||||||||||||| |||||| |    
T  39389116 aatttattcagctttgactcaggatcgttgacttgcccttcaaactgcttttcttttaagttgagctccttcacctttactttgaacttatactctttca 39389215  T
Q  177 actcaagttctttccaccgtccttcaaattgcttctc-tttgattcaaagctctcaacttggcttt 241  Q
    |||| ||||| ||||| |||| || |||| ||| ||| |||||||  |||  ||||||||||||||    
T  39389216 actccagttcgttccatcgtcttttaaatcgctgctcttttgatttgaagtcctcaacttggcttt 39389281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 128 - 216
Target Start/End: Complemental strand, 39137895 - 39137807
Alignment:
Q  128 tcttttaacttgaactcctttacctgtactttgaacttattctcttttaactcaagttctttccaccgtccttcaaattgcttctcttt 216  Q
    ||||||||||||| ||| || ||| ||||||||||||||||||||||| |||| ||||||||||||||| |||||| ||||||||||||    
T  39137895 tcttttaacttgagctctttgaccagtactttgaacttattctcttttgactcgagttctttccaccgttcttcaatttgcttctcttt 39137807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 101 - 256
Target Start/End: Original strand, 39397852 - 39398008
Alignment:
Q  101 tccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctcttttaactcaagttctttccaccgtcctt 200  Q
    ||||||||| | ||| ||| |||||||||||||||||  | |||||  |||| ||||||||||| |||||||||| ||||||||| |||||||||| |||    
T  39397852 tccttgactcgacctgcaacctgcttctcttttaactcaagctcctgcacctttactttgaactgattctcttttgactcaagttttttccaccgttctt 39397951  T
Q  201 caaattgcttctcttt-gattcaaagctctcaacttggctttcaaattgcttctttt 256  Q
    ||| |||||| ||||| ||||  ||   |||||||||||||||||| ||||| ||||    
T  39397952 caatttgcttatcttttgatttgaaatcctcaacttggctttcaaagtgcttatttt 39398008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 98 - 211
Target Start/End: Original strand, 39473409 - 39473522
Alignment:
Q  98 ggatccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctcttttaactcaagttctttccaccgtc 197  Q
    ||||||| ||||| |||| ||| ||||||||||||||||||||    ||| ||  ||||||||||||||||||||||| |||| ||||||||||| |||     
T  39473409 ggatcctcgacttctccttcaacctgcttctcttttaacttgagtgacttcactagtactttgaacttattctcttttgactcgagttctttccatcgtt 39473508  T
Q  198 cttcaaattgcttc 211  Q
    ||||||||||||||    
T  39473509 cttcaaattgcttc 39473522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 98 - 257
Target Start/End: Complemental strand, 39459295 - 39459135
Alignment:
Q  98 ggatccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctcttttaactcaagttctttccaccgtc 197  Q
    |||||||||||||||||| |||| ||||| ||||||||||||| ||| || ||  |||||||||||||||||||||     || | |||||||| | ||     
T  39459295 ggatccttgacttgtccttcaaattgcttgtcttttaacttgagctctttcactagtactttgaacttattctcttcagcatcgaattctttccgctgtt 39459196  T
Q  198 cttcaaattgcttctc-tttgattcaaagctctcaacttggctttcaaattgcttcttttt 257  Q
    |||||||||||||||| ||| |||  |||  |||||  |||||||||||||||||||||||    
T  39459195 cttcaaattgcttctcttttaatttgaagtcctcaaactggctttcaaattgcttcttttt 39459135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 97 - 212
Target Start/End: Original strand, 39381510 - 39381625
Alignment:
Q  97 aggatccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctcttttaactcaagttctttccaccgt 196  Q
    |||||||||| |||||| | |||||||||||||||||||||||| ||| || | || ||||||||||| |||||||||| | ||  ||||||||   |||    
T  39381510 aggatccttgtcttgtctttcaaactgcttctcttttaacttgagctcattcatctttactttgaactcattctcttttgattcgtgttctttcattcgt 39381609  T
Q  197 ccttcaaattgcttct 212  Q
     ||||||||| |||||    
T  39381610 tcttcaaatttcttct 39381625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 98 - 213
Target Start/End: Original strand, 39421832 - 39421947
Alignment:
Q  98 ggatccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctcttttaactcaagttctttccaccgtc 197  Q
    |||||||||||| || |||||||  |||| |||||||| |||| ||| || ||  ||||||||||||||||||||||| |||  |||||||||||  ||     
T  39421832 ggatccttgactagtgctccaaatcgcttgtcttttaatttgagctctttcactagtactttgaacttattctcttttgacttgagttctttccattgtt 39421931  T
Q  198 cttcaaattgcttctc 213  Q
    ||||||||| ||||||    
T  39421932 cttcaaatttcttctc 39421947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 257
Target Start/End: Complemental strand, 39152561 - 39152467
Alignment:
Q  164 ttattctcttttaactcaagttctttccaccgtccttcaaattgcttctc-tttgattcaaagctctcaacttggctttcaaattgcttcttttt 257  Q
    |||||||||||| |||| || ||||||||||||  ||||||||||||||| |||| ||  |||  |||||| ||| ||||||||| |||||||||    
T  39152561 ttattctcttttgactcgagctctttccaccgtttttcaaattgcttctcttttgttttgaagtcctcaacctggatttcaaatttcttcttttt 39152467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 117 - 215
Target Start/End: Original strand, 39494461 - 39494559
Alignment:
Q  117 caaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctcttttaactcaagttctttccaccgtccttcaaattgcttctctt 215  Q
    |||||||||||||||||  ||| | |||||| || ||| |||||||||| || |||||| ||||  | |||||||  |||||||||||||| |||||||    
T  39494461 caaactgcttctcttttggcttcagctccttcacgtgtgctttgaacttcttgtcttttgactctggctctttccctcgtccttcaaattgtttctctt 39494559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 39222986 - 39222932
Alignment:
Q  1 tgaataagaacatttacccgattgtgtttct---tcaatatattttttccttgac 52  Q
    ||||||||||||||||||||||| | |||||   |||||||||||||||||||||    
T  39222986 tgaataagaacatttacccgattctttttctccatcaatatattttttccttgac 39222932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 101 - 257
Target Start/End: Complemental strand, 16113339 - 16113182
Alignment:
Q  101 tccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctcttttaactcaagttctttccaccgtcctt 200  Q
    |||||||||||| || ||| |||||||||||||||||||| ||||||  ||| ||||||||||| |||||||||| | || ||||||||||||||| |||    
T  16113339 tccttgacttgtacttcaatctgcttctcttttaacttgagctccttctcctttactttgaactgattctcttttgattcgagttctttccaccgttctt 16113240  T
Q  201 caaattgcttctc-tttgattcaaagctctcaacttggctttcaaattgcttcttttt 257  Q
    |||||||||| || |||||||  ||   ||||||||||||||| || ||||| |||||    
T  16113239 caaattgcttatcgtttgatttgaaatactcaacttggctttccaaatgcttattttt 16113182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 128 - 216
Target Start/End: Complemental strand, 19807845 - 19807757
Alignment:
Q  128 tcttttaacttgaactcctttacctgtactttgaacttattctcttttaactcaagttctttccaccgtccttcaaattgcttctcttt 216  Q
    ||||||||||||| ||| || ||| ||||||||||||||||||||||| |||| ||||||||||||| | |||||| ||| ||||||||    
T  19807845 tcttttaacttgagctctttgaccagtactttgaacttattctcttttgactcgagttctttccacctttcttcaatttgattctcttt 19807757  T

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