View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4261_low_1 (Length: 469)
Name: NF4261_low_1
Description: NF4261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4261_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 14 - 244
Target Start/End: Original strand, 28466486 - 28466716
Alignment:
| Q |
14 |
tcatcaagcagtgatggggaaaggactattataaggaaagaaaaagatgaatggaagatcaatttctctgctgaaaaaccaccaacaccattgttggata |
113 |
Q |
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| T |
28466486 |
tcatcaagcagtgatggggaaaggactattataaggaaagaaaaagatgaatggaagatcaatttctctgctgaaaaaccaccaacaccattgttggata |
28466585 |
T |
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| Q |
114 |
cagttaattttccagttcatatgaagaacctgaccacagaggtttgaatcctttattaaacctaggaattatgtttaatatgttatggaataagcatggt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
28466586 |
cagttaattttccagttcatatgaagaacctgaccacagaggtttgaatcctttattaaacctaggaattatgtttgatatgttatggaataagcatggt |
28466685 |
T |
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| Q |
214 |
acattttattgactgtgactaataccctttt |
244 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
28466686 |
acattttattgactgtgactaataccctttt |
28466716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 14 - 238
Target Start/End: Original strand, 28474907 - 28475132
Alignment:
| Q |
14 |
tcatcaagcagtgatggggaaaggactattataaggaaagaaaaagatgaatggaagatcaatttctctgctgaaaaaccaccaacaccattgttggata |
113 |
Q |
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||||||| |||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28474907 |
tcatcaaacagtgatgaggagaggactgttataaggaaagaaaaagatgaatggaagatcaatttctctgctgaaaaaccaccaacaccattgttggata |
28475006 |
T |
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| Q |
114 |
cagttaattttccagttcatatgaagaacctgaccacagaggtttgaatcctttat-taaacctaggaattatgtttaatatgttatggaataagcatgg |
212 |
Q |
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| T |
28475007 |
cagttaattttccagttcatatgaagaacctgaccacagaggtttgaatcctttatcaaaaactaggatttatgtttcataggttatggaatatgtatgg |
28475106 |
T |
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| Q |
213 |
tacattttattgactgtgactaatac |
238 |
Q |
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| T |
28475107 |
tacatttaattgactgtgactaatac |
28475132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 294 - 453
Target Start/End: Original strand, 28475329 - 28475488
Alignment:
| Q |
294 |
aggatctggaacaattggctgctgaattgagggctgacattgtacacagtgtgtcagacactggtgggcatcttagctcaagcttgggagtggtggagtt |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28475329 |
aggatctggaacaattggctgctgaattgagggctgacattgtacacagtgtgtcagacactggtgggcatcttagctcaagcttgggagtggtggagtt |
28475428 |
T |
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| Q |
394 |
atctgttgctcttcatcatgttttcgacactccggatgacaagatcatatgggatgttgg |
453 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28475429 |
atcagttgctcttcatcatgttttcgacactccggatgacaagatcatatgggatgttgg |
28475488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 294 - 453
Target Start/End: Original strand, 28466779 - 28466938
Alignment:
| Q |
294 |
aggatctggaacaattggctgctgaattgagggctgacattgtacacagtgtgtcagacactggtgggcatcttagctcaagcttgggagtggtggagtt |
393 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
28466779 |
aggatctggaacaattggctgctgaattgagggctgacattgtacacagtgtgtcagacaccggtggtcatcttagctcaagcttgggagtggtggagtt |
28466878 |
T |
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| Q |
394 |
atctgttgctcttcatcatgttttcgacactccggatgacaagatcatatgggatgttgg |
453 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28466879 |
atcagttgctcttcatcatgttttcgacactccggatgacaagatcatatgggatgttgg |
28466938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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