View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4261_low_11 (Length: 287)
Name: NF4261_low_11
Description: NF4261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4261_low_11 |
 | |
|
| [»] scaffold0245 (2 HSPs) |
| | |
|
| [»] scaffold0229 (1 HSPs) |
| | |
|
| [»] scaffold0160 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 17 - 243
Target Start/End: Original strand, 26857725 - 26857946
Alignment:
| Q |
17 |
agtcatgacctttgttctccagagtagaaccataggtactgctcatatcctgatattttgaaacttgatttgcgattctacgaaatttatcagagtatag |
116 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| | ||| |||||| |
|
|
| T |
26857725 |
agtcacgacctttgttctccagagtagaaccataggtactgctcatatcctgatcttttgaaacttgatgtgcgattctacggagttt------gtatag |
26857818 |
T |
|
| Q |
117 |
tgaataagccatagttagatgatggtaaattagagttagttggttggttaggtagtgaagagttagttagactagcttaccttataaatatctctcacta |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
26857819 |
tgaataagccatagttagatgatggtaaattagagttaattggttggttaggtagttaagagttagttagactaacttaccttgtaaatatctctcacct |
26857918 |
T |
|
| Q |
217 |
ttgtactatcttgttat-tttttcattc |
243 |
Q |
| |
|
|| |||||||||||||| |||||||||| |
|
|
| T |
26857919 |
ttctactatcttgttatctttttcattc |
26857946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 101 - 282
Target Start/End: Original strand, 25050846 - 25051032
Alignment:
| Q |
101 |
atttatcagagtatagtgaataagccatagttagatgatg-gtaaattagagttagttggttggttaggtagtgaagagttagttag---actagcttac |
196 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||| || ||||| || ||||||| ||||||||||||| ||||||||||||| |||| || || |
|
|
| T |
25050846 |
atttattagagtatagtgaataaaccatagttagataatatgtaaactatggttagttacttggttaggtagttaagagttagttaggagactaactcac |
25050945 |
T |
|
| Q |
197 |
cttataaatatctctcactattgtactatcttgttat-tttttcattctaattcaatttgaattacaatgattattcctttgcttct |
282 |
Q |
| |
|
||||||||| | ||||||||||||| | | ||||| ||||||| | ||||||||| |||||||||| ||||||||||||| |||| |
|
|
| T |
25050946 |
tctataaatatatttcactattgtactctatggttatctttttcaatttaattcaatatgaattacaaagattattcctttgtttct |
25051032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 112 - 238
Target Start/End: Original strand, 30488430 - 30488558
Alignment:
| Q |
112 |
tatagtgaataagccatagttagatgatg-gtaaattagagttagttggttggttaggtagtgaagagttagttagactagctta-ccttataaatatct |
209 |
Q |
| |
|
|||||||||||| |||||||||| | || |||||||| ||| ||||||||||||| |||| || |||||||||||||| || | || |||||||| || |
|
|
| T |
30488430 |
tatagtgaataaaccatagttagttaatatgtaaattatggtttgttggttggttagatagttaaaagttagttagactaactcacccctataaatagct |
30488529 |
T |
|
| Q |
210 |
ctcactattgtactatcttgttatttttt |
238 |
Q |
| |
|
||||| |||||| | ||| ||||| |||| |
|
|
| T |
30488530 |
ctcaccattgtaatctctagttatctttt |
30488558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 4e-47; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 108 - 282
Target Start/End: Complemental strand, 4897538 - 4897363
Alignment:
| Q |
108 |
agagtatagtgaataagccatagttagatgatggtaaattagagttagttggttggttaggtagtgaagagttagttagactagcttaccttataaatat |
207 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||| || |||||||||||| ||||||||| ||||||||||||||||| || ||| |||||||| |
|
|
| T |
4897538 |
agagtatagtgaataaaccatagttagataatggtaaactatggttagttggttgattaggtagttaagagttagttagactaactcaccctataaataa |
4897439 |
T |
|
| Q |
208 |
ctctcactattgtactatcttgtta-ttttttcattctaattcaatttgaattacaatgattattcctttgcttct |
282 |
Q |
| |
|
|||||| ||||||||| ||| |||| ||||||||||||||||||| |||||||||| ||||||||||||| |||| |
|
|
| T |
4897438 |
ctctcaatattgtactctctagttagctttttcattctaattcaatatgaattacaaggattattcctttgtttct |
4897363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 142 - 238
Target Start/End: Original strand, 6742457 - 6742554
Alignment:
| Q |
142 |
taaattagagttagttggttggttaggtagtgaagagttagttagactagcttacct-tataaatatctctcactattgtactatcttgttatttttt |
238 |
Q |
| |
|
||||||| |||||||||||||||||||| | |||||||||||| |||| |||| | |||||||| |||||||||||||||||| ||| |||||||| |
|
|
| T |
6742457 |
taaattatggttagttggttggttaggtaattaagagttagttaaactaatttacttctataaataactctcactattgtactattttgatatttttt |
6742554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 238
Target Start/End: Original strand, 33689905 - 33689988
Alignment:
| Q |
156 |
ttggttggttaggtagtgaagagttagttagactagcttacc-ttataaatatctctcactattgtactatcttgttatttttt |
238 |
Q |
| |
|
|||||| |||||||||| |||||| | |||||||| ||| || ||||||||| |||||||||||||||||| ||||||| |||| |
|
|
| T |
33689905 |
ttggttagttaggtagttaagagtcaattagactaacttgcccttataaatagctctcactattgtactattttgttatctttt |
33689988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 223
Target Start/End: Complemental strand, 21637375 - 21637257
Alignment:
| Q |
108 |
agagtatagtgaataagccatagttagatgatggta-aattagagttagttggttggttaggtagtgaagagttagttagactagctta-ccttataaat |
205 |
Q |
| |
|
|||||||||||||||| |||||||||| | || | || || ||||||||||||||||||||||| | |||||||||| |||| || | |||||||||| |
|
|
| T |
21637375 |
agagtatagtgaataaaccatagttagtttatatgagaactatagttagttggttggttaggtagttaggagttagttacactaactcacccttataaat |
21637276 |
T |
|
| Q |
206 |
atctctc-actattgtact |
223 |
Q |
| |
|
| || || ||||||||||| |
|
|
| T |
21637275 |
aactttcgactattgtact |
21637257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 101 - 282
Target Start/End: Original strand, 1284814 - 1284997
Alignment:
| Q |
101 |
atttatcagagtatagtgaataagccatagttagatgatg-gtaaattagagttagttggttggttaggtagtgaagagttagttagactagcttacctt |
199 |
Q |
| |
|
|||||| |||||||| |||||| |||||||||| ||| ||||| || |||||||||||||||||||||| ||||||||||||||||| || ||| | |
|
|
| T |
1284814 |
atttattagagtatatagaataaaccatagttagttgagatgtaaactatggttagttggttggttaggtagttaagagttagttagactaactcaccct |
1284913 |
T |
|
| Q |
200 |
ataaatatctctcactattgtactatcttgttat-tttttcattctaattcaatttgaattacaatgattattcctttgcttct |
282 |
Q |
| |
|
||||||| || ||||||||||||| ||| ||||| ||||||| ||||||||||| |||||||||| ||||||||||||| |||| |
|
|
| T |
1284914 |
ataaataactatcactattgtactctctagttatctttttcaatctaattcaatatgaattacaaggattattcctttgtttct |
1284997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 151 - 228
Target Start/End: Original strand, 33072773 - 33072850
Alignment:
| Q |
151 |
gttagttggttggttaggtagtgaagagttagttagactagctta-ccttataaatatctctcactattgtactatctt |
228 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| || || | ||||||||||| |||||||||||||||| |||| |
|
|
| T |
33072773 |
gttagttggttggttaggtagttaagagttagttag-ctgactcacccttataaataactctcactattgtactctctt |
33072850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0245 (Bit Score: 77; Significance: 9e-36; HSPs: 2)
Name: scaffold0245
Description:
Target: scaffold0245; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 151 - 282
Target Start/End: Original strand, 11132 - 11264
Alignment:
| Q |
151 |
gttagttggttggttaggtagtgaagagttagttagactagcttaccttataaatatctctcactattgtactatcttgttat-tttttcattctaattc |
249 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| || ||| |||||||| || ||||||||||||| ||| ||||| ||||||| |||||||| |
|
|
| T |
11132 |
gttagttggttggttaggtagttaagagttagttagactaactcaccctataaataactatcactattgtactctctagttatctttttcaatctaattc |
11231 |
T |
|
| Q |
250 |
aatttgaattacaatgattattcctttgcttct |
282 |
Q |
| |
|
||| |||||||||| ||||||||||||| |||| |
|
|
| T |
11232 |
aatatgaattacaaggattattcctttgtttct |
11264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0245; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 101 - 274
Target Start/End: Original strand, 9459 - 9634
Alignment:
| Q |
101 |
atttatcagagtatagtgaataagccatagttagatgatg-gtaaattagagttagttggttggttaggtagtgaagagttagttagactagcttacctt |
199 |
Q |
| |
|
|||||| |||||||| |||||| |||||||||| ||| ||||| || |||||||||||||||||||||| ||| ||||||||||||| || ||| | |
|
|
| T |
9459 |
atttattagagtatatagaataaaccatagttagttgagatgtaaactatggttagttggttggttaggtagttaagtgttagttagactaactcaccct |
9558 |
T |
|
| Q |
200 |
ataaatatctctcactattgtactatcttgttat-tttttcattctaattcaatttgaattacaatgattattcct |
274 |
Q |
| |
|
||||||| || ||||||||||||| ||| ||||| ||||||| ||||||||||| |||||||||| |||||||||| |
|
|
| T |
9559 |
ataaataactatcactattgtactctctagttatctttttcaatctaattcaatatgaattacaaggattattcct |
9634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 9e-36; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 108 - 282
Target Start/End: Complemental strand, 10032795 - 10032619
Alignment:
| Q |
108 |
agagtatagtgaataagccatagttagatgatg-gtaaattagagttagttggttggttaggtagtgaagagttagttagactagcttaccttataaata |
206 |
Q |
| |
|
||||||||| |||||| |||||||||| ||| ||||| || |||||||||||||||||||||| |||||| ||||||||| || ||| |||||||| |
|
|
| T |
10032795 |
agagtatagagaataaaccatagttagttgagatgtaaactatggttagttggttggttaggtagttaagagtcggttagactaactcaccctataaata |
10032696 |
T |
|
| Q |
207 |
tctctcactattgtactatcttgttat-tttttcattctaattcaatttgaattacaatgattattcctttgcttct |
282 |
Q |
| |
|
|||||||||||||||| ||| ||||| ||||||||||||||||||| |||||||||| || |||||||||| |||| |
|
|
| T |
10032695 |
actctcactattgtactctctagttatctttttcattctaattcaatatgaattacaaggactattcctttgtttct |
10032619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 108 - 282
Target Start/End: Complemental strand, 18812780 - 18812602
Alignment:
| Q |
108 |
agagtatagtgaataagccatagttagatgatg-gtaaattagagttagttggttggttaggtagtgaagagttagttag--actagcttaccttataaa |
204 |
Q |
| |
|
|||||||||||||||| ||||| |||||| || ||||| || ||||||| || |||||||||| |||||||||||| |||| || || |||||| |
|
|
| T |
18812780 |
agagtatagtgaataaaccataattagataatatgtaaactatggttagttacttagttaggtagttaagagttagttacgaactaactcactctataaa |
18812681 |
T |
|
| Q |
205 |
tatctctcactattgtactatcttgttat-tttttcattctaattcaatttgaattacaatgattattcctttgcttct |
282 |
Q |
| |
|
||||||||||||||||||| | | ||||| ||||||| ||||||||||| |||||||||| |||||||| |||| |||| |
|
|
| T |
18812680 |
tatctctcactattgtactctatggttatctttttcaatctaattcaatatgaattacaaggattattcttttgtttct |
18812602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 103 - 238
Target Start/End: Original strand, 42664918 - 42665055
Alignment:
| Q |
103 |
ttatcagagtatagtgaataagccatagttagatgatg-gtaaattagagttagttggttggttaggtagtgaagagttagttagactagctta-cctta |
200 |
Q |
| |
|
|||| |||||||| ||||||| |||||||||| | || ||||| || |||||||||||| ||||||||| ||||||||||||||||| || | ||||| |
|
|
| T |
42664918 |
ttattagagtataatgaataaaccatagttagttaatatgtaaactacggttagttggttgtttaggtagttaagagttagttagactaactcaccctta |
42665017 |
T |
|
| Q |
201 |
taaatatctctcactattgtactatcttgttatttttt |
238 |
Q |
| |
|
|||||| |||||| |||||||||||||||||| |||| |
|
|
| T |
42665018 |
taaatagttctcacaattgtactatcttgttatctttt |
42665055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 190
Target Start/End: Complemental strand, 8818859 - 8818777
Alignment:
| Q |
108 |
agagtatagtgaataagccatagttagatgatggtaaattagagttagttggttggttaggtagtgaagagttagttagacta |
190 |
Q |
| |
|
|||||||||||||||| ||| ||||| | || ||||| ||||||| ||| |||||||| ||||| || | |||||||||||| |
|
|
| T |
8818859 |
agagtatagtgaataaatcatggttagttaatagtaaactagagtttgtttgttggttaagtagttaaaaattagttagacta |
8818777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 110 - 282
Target Start/End: Original strand, 548088 - 548261
Alignment:
| Q |
110 |
agtatagtgaataagccatagttagatgatggtaaattagagttagttggttggttaggtagtgaagagttagttagactagcttaccttataaatatct |
209 |
Q |
| |
|
|||||||||||||| |||| |||||| |||||||| || ||||||||||||||||||||| ||||||||||||||||| || || |||||||| || |
|
|
| T |
548088 |
agtatagtgaataaatcatatttagataatggtaaactatgattagttggttggttaggtagttaagagttagttagactaactcacactataaataact |
548187 |
T |
|
| Q |
210 |
ctcactattgtactatcttgttat-tttttcattctaattcaatttgaattacaatgattattcctttgcttct |
282 |
Q |
| |
|
| | ||||||||| ||| |||| ||||||||||||||||||| |||||||||| ||||||||||||| |||| |
|
|
| T |
548188 |
ttaaatattgtactctctaattatctttttcattctaattcaatatgaattacaaggattattcctttgtttct |
548261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 111 - 238
Target Start/End: Original strand, 25836364 - 25836493
Alignment:
| Q |
111 |
gtatagtgaataagccatagttagatgatgg-taaattagagttagttggttggttaggtagtgaagagttagttagactagctta-ccttataaatatc |
208 |
Q |
| |
|
||||||||||||| |||||||||| |||| | |||| || | ||||||||| |||||||||| | |||||||||||||||| | | ||||||||||| | |
|
|
| T |
25836364 |
gtatagtgaataaaccatagttagttgatagataaactatggctagttggttagttaggtagttaggagttagttagactagttcatccttataaataac |
25836463 |
T |
|
| Q |
209 |
tctcactattgtactatcttgttatttttt |
238 |
Q |
| |
|
|||||| |||||||| ||||||||| |||| |
|
|
| T |
25836464 |
tctcaccattgtactctcttgttatctttt |
25836493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 222
Target Start/End: Complemental strand, 26667227 - 26667113
Alignment:
| Q |
110 |
agtatagtgaataagccatagttagatgatg-gtaaattagagttagttggttggttaggtagtgaagagttagttagactagctta-ccttataaatat |
207 |
Q |
| |
|
|||||||||||| | |||||||||| | || |||||||| ||||||||||| |||||||||| ||||||||||||||||| || | || |||||||| |
|
|
| T |
26667227 |
agtatagtgaattaaccatagttagttaatatgtaaattatggttagttggttagttaggtagttaagagttagttagactaactcacccctataaataa |
26667128 |
T |
|
| Q |
208 |
ctctcactattgtac |
222 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
26667127 |
ctctcaccattgtac |
26667113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 282
Target Start/End: Original strand, 34143068 - 34143116
Alignment:
| Q |
234 |
tttttcattctaattcaatttgaattacaatgattattcctttgcttct |
282 |
Q |
| |
|
||||||| ||||||||||| |||||||||| ||||||||||||| |||| |
|
|
| T |
34143068 |
tttttcaatctaattcaatatgaattacaaggattattcctttgtttct |
34143116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 277
Target Start/End: Complemental strand, 43820007 - 43819878
Alignment:
| Q |
152 |
ttagttggttggttaggtagtgaagagttagttagactagcttac-cttataaatatctctcactattgtactatcttgttat-tttttcattctaa--t |
247 |
Q |
| |
|
||||||||||||||||||||| || ||||||| |||||| || || | |||||||| | |||| | |||||| ||| |||| ||||||||||||| | |
|
|
| T |
43820007 |
ttagttggttggttaggtagttaaaagttagtaagactaactcactcctataaataaccctcattgctgtactctctaattatctttttcattctaattt |
43819908 |
T |
|
| Q |
248 |
tcaatttgaattacaatgattattcctttg |
277 |
Q |
| |
|
||||| ||||||| || |||||||| |||| |
|
|
| T |
43819907 |
tcaatatgaattataaggattattcttttg |
43819878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 222
Target Start/End: Complemental strand, 9032902 - 9032830
Alignment:
| Q |
151 |
gttagttggttggttaggtagtgaagagttagttagactagc-ttaccttataaatatctctcactattgtac |
222 |
Q |
| |
|
||||| ||||||||| ||||| ||||||||||||||||| | || ||||||||||| || |||| ||||||| |
|
|
| T |
9032902 |
gttagctggttggttgagtagttaagagttagttagactaactttcccttataaatagctttcaccattgtac |
9032830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0229 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: scaffold0229
Description:
Target: scaffold0229; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 101 - 274
Target Start/End: Original strand, 9787 - 9962
Alignment:
| Q |
101 |
atttatcagagtatagtgaataagccatagttagatgatg-gtaaattagagttagttggttggttaggtagtgaagagttagttagactagcttacctt |
199 |
Q |
| |
|
|||||| |||||||| |||||| |||||||||| ||| ||||| || |||||||||||||||||||||| ||| ||||||||||||| || ||| | |
|
|
| T |
9787 |
atttattagagtatatagaataaaccatagttagttgagatgtaaactatggttagttggttggttaggtagttaagtgttagttagactaactcaccct |
9886 |
T |
|
| Q |
200 |
ataaatatctctcactattgtactatcttgttat-tttttcattctaattcaatttgaattacaatgattattcct |
274 |
Q |
| |
|
||||||| || ||||||||||||| ||| ||||| ||||||| ||||||||||| |||||||||| |||||||||| |
|
|
| T |
9887 |
ataaataactatcactattgtactctctagttatctttttcaatctaattcaatatgaattacaaggattattcct |
9962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 114 - 225
Target Start/End: Original strand, 14007624 - 14007741
Alignment:
| Q |
114 |
tagtgaataagccatagttagatgatg-gtaaattagagttagttggttggttaggtagtgaagagttagttagactagctta-----ccttataaatat |
207 |
Q |
| |
|
|||||||||| |||||||||| | || ||||| || |||||||||||||||||||||| ||||||||||||||||| |||| || |||||||| |
|
|
| T |
14007624 |
tagtgaataaaccatagttagttaatatgtaaactatggttagttggttggttaggtagttaagagttagttagactaacttactcacccatataaataa |
14007723 |
T |
|
| Q |
208 |
ctctcactattgtactat |
225 |
Q |
| |
|
||||||| |||||||||| |
|
|
| T |
14007724 |
ctctcaccattgtactat |
14007741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 190
Target Start/End: Original strand, 20957431 - 20957514
Alignment:
| Q |
108 |
agagtatagtgaataagccatagttagatgat-ggtaaattagagttagttggttggttaggtagtgaagagttagttagacta |
190 |
Q |
| |
|
|||||||||||||||| |||||||||| | || |||||||| ||||||| ||| |||||||||| ||||||||||||||| |
|
|
| T |
20957431 |
agagtatagtgaataaaccatagttaggttatatgtaaattatggttagttagttagttaggtagttgtgagttagttagacta |
20957514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0160 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0160
Description:
Target: scaffold0160; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 28397 - 28483
Alignment:
| Q |
102 |
tttatcagagtatagtgaataagccatagttagatgat-ggtaaattagagttagttggttggttaggtagtgaagagttagttaga |
187 |
Q |
| |
|
||||| |||||||| ||||||| |||||||||| |||| |||||| || |||||||||||||||| ||| |||||||||||||| |
|
|
| T |
28397 |
tttattagagtatattgaataaaccatagttagttgataggtaaactatggttagttggttggttatacagttaagagttagttaga |
28483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 223
Target Start/End: Complemental strand, 29598214 - 29598097
Alignment:
| Q |
108 |
agagtatagtgaataagccatagttagatgat-ggtaaattagagttagttggttggttaggtagtgaagagttagttagactagctta-ccttataaat |
205 |
Q |
| |
|
|||||||||||||||| |||||||||| | || ||||| || ||||||| || |||||||| || | ||||||||||||||| || | || ||||||| |
|
|
| T |
29598214 |
agagtatagtgaataaaccatagttagttaatatgtaaactatggttagtttgtaggttaggtggttaggagttagttagactaactcacccctataaat |
29598115 |
T |
|
| Q |
206 |
atctctcactattgtact |
223 |
Q |
| |
|
| ||||||| ||| |||| |
|
|
| T |
29598114 |
aactctcaccattatact |
29598097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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