View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4261_low_19 (Length: 224)
Name: NF4261_low_19
Description: NF4261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4261_low_19 |
 | |
|
| [»] scaffold0331 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0331 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0331
Description:
Target: scaffold0331; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 115 - 186
Target Start/End: Complemental strand, 1033 - 962
Alignment:
| Q |
115 |
gcagactgacaaacatgccatgatcaattaacagaactaagaagtgagaaacccaacaacggaacctatttg |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1033 |
gcagactgacaaacatgccatgatcaattaacagaactaagaagtgagaaacccaacaacggaacctatttg |
962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 115 - 186
Target Start/End: Original strand, 7205603 - 7205674
Alignment:
| Q |
115 |
gcagactgacaaacatgccatgatcaattaacagaactaagaagtgagaaacccaacaacggaacctatttg |
186 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
7205603 |
gcagattgacacacatgccatgatcaattaacagaactaagaagtgagaaacccaatgacagaacctatttg |
7205674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 65 - 114
Target Start/End: Complemental strand, 28087102 - 28087052
Alignment:
| Q |
65 |
gctaatagcgaactctctctg-ccatgccaacttccttttggcttgttggc |
114 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
28087102 |
gctaatagcgaactctctctgtccatgccaacttccttttggcttgttggc |
28087052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 46
Target Start/End: Complemental strand, 28087180 - 28087150
Alignment:
| Q |
16 |
acagacccgaagaaactcgctattagcgaaa |
46 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
28087180 |
acagacccgaagaaactcgctattagcgaaa |
28087150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University