View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4261_low_2 (Length: 418)

Name: NF4261_low_2
Description: NF4261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4261_low_2
NF4261_low_2
[»] chr4 (2 HSPs)
chr4 (18-293)||(24725335-24725610)
chr4 (293-390)||(18025588-18025685)
[»] chr1 (1 HSPs)
chr1 (291-400)||(21464586-21464695)
[»] scaffold0125 (1 HSPs)
scaffold0125 (293-400)||(35685-35792)
[»] chr8 (1 HSPs)
chr8 (293-400)||(17833337-17833444)
[»] chr6 (2 HSPs)
chr6 (293-400)||(19324540-19324647)
chr6 (118-155)||(8837825-8837862)
[»] scaffold0553 (1 HSPs)
scaffold0553 (293-391)||(7670-7768)
[»] chr3 (1 HSPs)
chr3 (293-390)||(14674362-14674459)
[»] chr7 (2 HSPs)
chr7 (293-363)||(9016825-9016895)
chr7 (308-363)||(10608503-10608558)


Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 293
Target Start/End: Original strand, 24725335 - 24725610
Alignment:
Q  18 agacagtgcaacgattgcttcattcataaaactacatgatactgctacatttccatttcatcttcagaagaagaggtactactattctcactctattcac 117  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24725335 agacagtgcaacaattgcttcattcataaaactacatgatactgctacatttccatttcatcttcagaagaagaggtactactattctcactctattcac 24725434  T
Q  118 catcactttttatattcacattctatatcgataccattcccgataatggaatcctttaattaaagttacaagttacgagattgaaaactttgtnnnnnnn 217  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  24725435 catcactttttatattcacattctatatcgataccattaccgataatggaatcctttaattaaagttacaagttacgagattgaaaactttgtaaaaaat 24725534  T
Q  218 ntaacttacgagattgaaaatactttataattttgttggatataaatcattattcaatcatttaatgtcatgatac 293  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24725535 ataacttacgagattgaaaatactttataattttgttggatataaatcattattcaatcatttaatgtcatgatac 24725610  T

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Target: chr4; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 293 - 390
Target Start/End: Complemental strand, 18025685 - 18025588
Alignment:
Q  293 cctactgatttgtatctagatttctttcgggatcgatgcgggcttcctaattacaggctaccttaacttgtcggagtctgttgtttcttttcctgttt 390  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||| ||||||||| ||||||    
T  18025685 cctactgatttgtatctagaattctttcgggatcgatgcaggcttcctaattacaggcttccttaacttgttggagtctgtggtttctttttctgttt 18025588  T

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Target: chr1 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 291 - 400
Target Start/End: Original strand, 21464586 - 21464695
Alignment:
Q  291 tacctactgatttgtatctagatttctttcgggatcgatgcgggcttcctaattacaggctaccttaacttgtcggagtctgttgtttcttttcctgttt 390  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  21464586 tacctactgatttgaatctagatttctttcgggatcgatgcgggcttcctaattacaggctaccttaacttgtcggagtctgttgtttcattttctgttt 21464685  T
Q  391 tttctgtttt 400  Q
    ||||||||||    
T  21464686 tttctgtttt 21464695  T

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Target: scaffold0125 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 293 - 400
Target Start/End: Complemental strand, 35792 - 35685
Alignment:
Q  293 cctactgatttgtatctagatttctttcgggatcgatgcgggcttcctaattacaggctaccttaacttgtcggagtctgttgtttcttttcctgttttt 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||    
T  35792 cctactgatttgtatctagatttctttcgggatcgatgcgggcttcctaattacaggcttccttaagttgtcggagtctgttgtttctttttctgttttt 35693  T
Q  393 tctgtttt 400  Q
    ||| ||||    
T  35692 tctttttt 35685  T

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Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 293 - 400
Target Start/End: Original strand, 17833337 - 17833444
Alignment:
Q  293 cctactgatttgtatctagatttctttcgggatcgatgcgggcttcctaattacaggctaccttaacttgtcggagtctgttgtttcttttcctgttttt 392  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  17833337 cctactgatttgtacctatatttctttcgggatcgatgcgggcttcctaattacaggctaccttaacttgtcggagtctgttgtttcttcttctgttttt 17833436  T
Q  393 tctgtttt 400  Q
    ||||||||    
T  17833437 tctgtttt 17833444  T

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Target: chr6 (Bit Score: 84; Significance: 9e-40; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 293 - 400
Target Start/End: Original strand, 19324540 - 19324647
Alignment:
Q  293 cctactgatttgtatctagatttctttcgggatcgatgcgggcttcctaattacaggctaccttaacttgtcggagtctgttgtttcttttcctgttttt 392  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||    
T  19324540 cctactgatttgtatctagatttttttcgggatcgatgcaggcttcctaattacaggctaccttaacttgtcggagtctgttgcctctttttctgttttt 19324639  T
Q  393 tctgtttt 400  Q
    | ||||||    
T  19324640 tttgtttt 19324647  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 155
Target Start/End: Complemental strand, 8837862 - 8837825
Alignment:
Q  118 catcactttttatattcacattctatatcgataccatt 155  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  8837862 catcacttttcatattcacattctatatctataccatt 8837825  T

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Target: scaffold0553 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 293 - 391
Target Start/End: Complemental strand, 7768 - 7670
Alignment:
Q  293 cctactgatttgtatctagatttctttcgggatcgatgcgggcttcctaattacaggctaccttaacttgtcggagtctgttgtttcttttcctgtttt 391  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||| ||||||||| |||||||    
T  7768 cctactgatttgtatctagatttctttcgggatcgatgcaggcttcctaattacaggcttccttaacttgttggagtctgtggtttctttttctgtttt 7670  T

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Target: chr3 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 293 - 390
Target Start/End: Complemental strand, 14674459 - 14674362
Alignment:
Q  293 cctactgatttgtatctagatttctttcgggatcgatgcgggcttcctaattacaggctaccttaacttgtcggagtctgttgtttcttttcctgttt 390  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||| ||||||||| ||||||    
T  14674459 cctactgatttgtatctagaattctttcgggatcgatgcaggcttcctaattacaggcttccttaacttgttggagtctgtggtttctttttctgttt 14674362  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 293 - 363
Target Start/End: Original strand, 9016825 - 9016895
Alignment:
Q  293 cctactgatttgtatctagatttctttcgggatcgatgcgggcttcctaattacaggctaccttaacttgt 363  Q
    ||||||||||||  ||||||||||||||  ||| |||| |||||||||||||||||||| |||||| ||||    
T  9016825 cctactgatttgagtctagatttctttcccgatagatgtgggcttcctaattacaggcttccttaatttgt 9016895  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 363
Target Start/End: Complemental strand, 10608558 - 10608503
Alignment:
Q  308 ctagatttctttcgggatcgatgcgggcttcctaattacaggctaccttaacttgt 363  Q
    |||||||||||||| ||| ||||  ||||||||||||||||||| |||||| ||||    
T  10608558 ctagatttctttcgtgatagatgtaggcttcctaattacaggcttccttaatttgt 10608503  T

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