View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4261_low_3 (Length: 402)
Name: NF4261_low_3
Description: NF4261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4261_low_3 |
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| [»] scaffold0204 (3 HSPs) |
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Alignment Details
Target: scaffold0204 (Bit Score: 335; Significance: 0; HSPs: 3)
Name: scaffold0204
Description:
Target: scaffold0204; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 13 - 386
Target Start/End: Original strand, 19184 - 19558
Alignment:
| Q |
13 |
acctgtgttatgtttaaaaccaaactctaaagtctagataagccaagtatcaaatgtagctttgaaaagtgactaactgccaacattaattatgttaa-t |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
19184 |
acctgtgttatgtttaaaaccaaactctaaagtctagataagccaagtatcaaatgtagctttgaaaagtgactaactgccaacattaattatgttaaat |
19283 |
T |
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| Q |
112 |
gttaacataggctcatcaaattttacaggnnnnnnnnggtattaatgcaatggaaacaatcaatggtcctataaagtatgtttgagttagaagataatcc |
211 |
Q |
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| T |
19284 |
gttaacataggctcatcaaattttacaggaaaaaaaaggtattaatgcaatggaaacaatcaatggtcctataaagtatgtttgacttagaagataatcc |
19383 |
T |
|
| Q |
212 |
agttatacatttttgaaggctattccgctgtacttgtcggagatggcgccaacgcactttcgaggaggattgaacatgatgtttcaagttgcaaccacgt |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19384 |
agttatacatttttgaaggctattccgctgtacttgtcggagatggcgccaacacactttcgaggaggattgaacatgatgtttcaagttgcaaccacgt |
19483 |
T |
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| Q |
312 |
ttgggatttttacagcaaatatgatcaattatggaacacaacagattcaaccctgggggtggaggctggcccttg |
386 |
Q |
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| T |
19484 |
ttgggatttttacagcaaatatgatcaattatggaacacaacagattcaaccctgggggtggaggctggcccttg |
19558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0204; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 222 - 386
Target Start/End: Original strand, 7179 - 7343
Alignment:
| Q |
222 |
ttttgaaggctattccgctgtacttgtcggagatggcgccaacgcactttcgaggaggattgaacatgatgtttcaagttgcaaccacgtttgggatttt |
321 |
Q |
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| T |
7179 |
ttttgaaggcgattcctctttacttgtcagagatggcgccaacacacctacgaggaggcctaaacatgatgtttcaagttgcaaccacacttggcatttt |
7278 |
T |
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| Q |
322 |
tacagcaaatatgatcaattatggaacacaacagattcaaccctgggggtggaggctggcccttg |
386 |
Q |
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| T |
7279 |
tgcagcaaatatgatcaattttggaacacgcaatattaagccatgggggtggaggctgtcccttg |
7343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0204; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 219
Target Start/End: Original strand, 7077 - 7123
Alignment:
| Q |
173 |
aatggtcctataaagtatgtttgagttagaagataatccagttatac |
219 |
Q |
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| T |
7077 |
aatggttcaataaagtatgtttgagttagaagataatacagttatac |
7123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 13 - 386
Target Start/End: Original strand, 48331662 - 48332036
Alignment:
| Q |
13 |
acctgtgttatgtttaaaaccaaactctaaagtctagataagccaagtatcaaatgtagctttgaaaagtgactaactgccaacattaattatgttaa-t |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
48331662 |
acctgtgttatgtttaaaaccaaactctaaagtctagataagccaagtatcaaatgtagctttgaaaagtgactaactgccaacattaattatgttaaat |
48331761 |
T |
|
| Q |
112 |
gttaacataggctcatcaaattttacaggnnnnnnnnggtattaatgcaatggaaacaatcaatggtcctataaagtatgtttgagttagaagataatcc |
211 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
48331762 |
gttaacataggctcatcaaattttacaggaaaaaaaaggtattaatgcaatggaaacaatcaatggtcctataaagtatgtttgacttagaagataatcc |
48331861 |
T |
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| Q |
212 |
agttatacatttttgaaggctattccgctgtacttgtcggagatggcgccaacgcactttcgaggaggattgaacatgatgtttcaagttgcaaccacgt |
311 |
Q |
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| T |
48331862 |
agttatacatttttgaaggctattccgctgtacttgtcggagatggcgccaacacactttcgaggaggattgaacatgatgtttcaagttgcaaccacgt |
48331961 |
T |
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| Q |
312 |
ttgggatttttacagcaaatatgatcaattatggaacacaacagattcaaccctgggggtggaggctggcccttg |
386 |
Q |
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| T |
48331962 |
ttgggatttttacagcaaatatgatcaattatggaacacaacagattcaaccctgggggtggaggctggcccttg |
48332036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 22 - 386
Target Start/End: Original strand, 48343689 - 48344054
Alignment:
| Q |
22 |
atgtttaaaaccaaactctaaagtctagataagccaagtatcaaatgt-agctttgaaaagtgactaactgccaacattaattatgttaatgttaacata |
120 |
Q |
| |
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||||| ||||||||| |||||||||||||||| | |||||||||||| |||||| ||||||||| || |||||||||||| | |||||||| || |
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| T |
48343689 |
atgttcaaaaccaaagtctaaagtctagataaccatagtatcaaatgttagctttaaaaagtgaca----gcgaacattaattatatgaatgttaatgta |
48343784 |
T |
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| Q |
121 |
ggctcatcaaattttacaggnnnnnnnnggtattaatgcaatggaaacaatcaatggtcctataaagtatgtttgagttagaagataatccagttataca |
220 |
Q |
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| | |||||||||||||| |||| ||||| ||||||||||||| ||| | ||||||||||||| |||||||||||||| || |||||| |
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| T |
48343785 |
gagtg-tcaaattttacaggaaaaaaaaggtagtaatgtgatggaaacaatcaggggtacaataaagtatgtttaagttagaagataattcaattatact |
48343883 |
T |
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| Q |
221 |
-----tttttgaaggctattccgctgtacttgtcggagatggcgccaacgcactttcgaggaggattgaacatgatgtttcaagttgcaaccacgtttgg |
315 |
Q |
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| T |
48343884 |
atacctttttgaaggctattccgctctatttgtcagagatggcgccaacccactttcgaggagccctgaacatgatgtttcaagttgcaaccacttttgg |
48343983 |
T |
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| Q |
316 |
gatttttacagcaaatatgatcaattatggaacacaacagattcaaccctgggggtggaggctggcccttg |
386 |
Q |
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| T |
48343984 |
gatttttacagcaaatatgatcaattacggaacacagcagattcaaccatgggggtggaggttggcccttg |
48344054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 222 - 384
Target Start/End: Complemental strand, 36294642 - 36294480
Alignment:
| Q |
222 |
ttttgaaggctattccgctgtacttgtcggagatggcgccaacgcactttcgaggaggattgaacatgatgtttcaagttgcaaccacgtttgggatttt |
321 |
Q |
| |
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|||||||||| ||||| || || ||||| |||||||| ||||| ||| | ||||||||||||||||||||||||||||| ||||| || ||||||||||| |
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| T |
36294642 |
ttttgaaggcgattccactttatttgtcagagatggcaccaacccacatgcgaggaggattgaacatgatgtttcaagtggcaacaacttttgggatttt |
36294543 |
T |
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| Q |
322 |
tacagcaaatatgatcaattatggaacacaacagattcaaccctgggggtggaggctggccct |
384 |
Q |
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| || |||||| | |||| ||||||||| ||||| |||| ||||| ||||||||| |||| |
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| T |
36294542 |
cattgccaatatggtgaattttggaacacagaagattaaaccatggggatggaggctgtccct |
36294480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 221 - 375
Target Start/End: Complemental strand, 41415011 - 41414857
Alignment:
| Q |
221 |
tttttgaaggctattccgctgtacttgtcggagatggcgccaacgcactttcgaggaggattgaacatgatgtttcaagttgcaaccacgtttgggattt |
320 |
Q |
| |
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||||||||||| |||||||| || ||||| |||||||| || || ||| | ||||||||||||||||||||||||||||| ||||| || |||||||||| |
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| T |
41415011 |
tttttgaaggcaattccgctttatttgtcagagatggcaccgacccacctgcgaggaggattgaacatgatgtttcaagtggcaacaacttttgggattt |
41414912 |
T |
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| Q |
321 |
ttacagcaaatatgatcaattatggaacacaacagattcaaccctgggggtggag |
375 |
Q |
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| | ||| |||||| | |||| |||||||||| |||| |||| ||||| ||||| |
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| T |
41414911 |
tcatagccaatatggtgaattttggaacacaaaggattaaaccgtggggatggag |
41414857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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