View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4261_low_6 (Length: 362)
Name: NF4261_low_6
Description: NF4261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4261_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 16 - 347
Target Start/End: Complemental strand, 24712363 - 24712046
Alignment:
| Q |
16 |
acccaaaaacaaaggcagcctacaacagaaacaccaagagctcactaccacccacaaaaacaccaataaaaccaccaataaaacatccacctccctacct |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
24712363 |
acccaaaaacaaaggcagcctacaacagaaacaccaagagctcactaccacccacaacaacaccaataaaac------------atccacctccctacct |
24712276 |
T |
|
| Q |
116 |
ataaaaacgtctaccaccccacttaatcagctcccgttcatcaatgttcaaacaccagatccgagtccttattatacacgaccaccccatccgctgatta |
215 |
Q |
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| T |
24712275 |
a-aaaaacgtctaccaccccacttaatcagctcccgttcatcaatgttcaaacaccagatca-agtccttattatacacgaccaccccatctgctgatta |
24712178 |
T |
|
| Q |
216 |
tgaatggttatgttgacattaaacatattatgtaaagctttctccagaacatcatctgatgtttgtaaaaaataactactttgagtgtgacatttcctat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24712177 |
tgaatggttatgttgacattaaacatattatgtaaagctttctccagaacatcatccgatgtttgtaaaaaataactactttgagtgtgacatttcctat |
24712078 |
T |
|
| Q |
316 |
aacggattcaagctgttttgacccaaacaatt |
347 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
24712077 |
aacggattcaagctgttttgacccaaacaatt |
24712046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 31424074 - 31424023
Alignment:
| Q |
24 |
acaaaggcagcctacaacagaaacaccaagagctcactaccacccacaaaaa |
75 |
Q |
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| T |
31424074 |
acaaaggcagcctacaacagaaacaccaagagtacactaccatccaccaaaa |
31424023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 148
Target Start/End: Complemental strand, 31424031 - 31423970
Alignment:
| Q |
87 |
ccaccaataaaacatccacctccctacctataaaaacgtctacca-ccccacttaatcagctc |
148 |
Q |
| |
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||||||| |||||||||||||||||||||| || ||| || |||| ||||||||||||||||| |
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| T |
31424031 |
ccaccaaaaaaacatccacctccctaccta-aacaacatcaaccacccccacttaatcagctc |
31423970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 33 - 206
Target Start/End: Original strand, 17820171 - 17820344
Alignment:
| Q |
33 |
gcctacaacagaaacaccaagagctcactaccacccacaaaaacaccaataaaaccaccaataaaacatccacctccctacctataaaaacgtctaccac |
132 |
Q |
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||||||||| |||||||| |||| ||||||||||||| |||| ||| || ||| |||| |||| |||||||||||||||||||| ||||| ||||||||| |
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| T |
17820171 |
gcctacaactgaaacaccgagagatcactaccacccataaaatcactaa-aaacccactaatataacatccacctccctacctaaaaaaatgtctaccac |
17820269 |
T |
|
| Q |
133 |
cccacttaatcagctcccgttcatc-aatgttcaaacaccagatccgagtccttattatacacgaccaccccatc |
206 |
Q |
| |
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|||| |||| |||||||||||||| ||||||| ||| ||| |||||||| |||||||||||||||||||||||| |
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| T |
17820270 |
cccatataataagctcccgttcatcaaatgttccaacgccatatccgagttcttattatacacgaccaccccatc |
17820344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 77
Target Start/End: Complemental strand, 3679149 - 3679106
Alignment:
| Q |
34 |
cctacaacagaaacaccaagagctcactaccacccacaaaaaca |
77 |
Q |
| |
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||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
3679149 |
cctacaacagaaacaccaatagctcaccaccacccacaaaaaca |
3679106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 15817732 - 15817791
Alignment:
| Q |
21 |
aaaacaaaggcagcctacaacagaaacaccaagagctcactaccacccacaaaaacacca |
80 |
Q |
| |
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|||| |||||| || ||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
15817732 |
aaaataaaggcggcttacaacataaacaccaagagctcaccaccacccacaaaaacacca |
15817791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 23650115 - 23650043
Alignment:
| Q |
12 |
atgaacccaaaaacaaaggcagcctacaacagaaacaccaagagctcactaccacccac-aaaaacaccaataaaa |
86 |
Q |
| |
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|||||||||||| || ||||||||||||||| | ||||||||||| | ||||||||| |||||||||| ||||| |
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| T |
23650115 |
atgaacccaaaatcagaggcagcctacaacatatacaccaagagcac---accacccactaaaaacaccactaaaa |
23650043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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