View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4261_low_8 (Length: 333)
Name: NF4261_low_8
Description: NF4261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4261_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 131 - 315
Target Start/End: Original strand, 55977355 - 55977539
Alignment:
| Q |
131 |
ggaagcagcgacgtttgcgaagctagcttcaggcaacatgctatccacacgcttgccggaattttgctcggccgccaacatcctctgcttcccggaagta |
230 |
Q |
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| T |
55977355 |
ggaagcagcgacctttgcgaagctagcttcaggcaacatgctatccacacgcttgccggaattttgctcggccgccaacctcctctgcctcccggaagta |
55977454 |
T |
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| Q |
231 |
gcccagagtcttgaaaagcacgaaggtgatgaaaatttcaaggcttacagcgataagaatttcaccaactacggaacgagtctac |
315 |
Q |
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| T |
55977455 |
gcccagagtcttgaaaagcacgaaggtgatgaaaatttcaaggcttacagcgataagaatttcaccaactacggaacgagtctac |
55977539 |
T |
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Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 55977291 - 55977354
Alignment:
| Q |
14 |
agacaaaaacccattcacaccaaaagcatttgtgaatcggtattgggataaagagatcaccaac |
77 |
Q |
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| T |
55977291 |
agacaaaaacccattcacaccaaaagcatttgtgactcggtattgggataaagagatcaccaac |
55977354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 14 - 308
Target Start/End: Original strand, 14864919 - 14865213
Alignment:
| Q |
14 |
agacaaaaacccattcacaccaaaagcatttgtgaatcggtattgggataaagagatcaccaaccgtttaccaaaaccgtctttcctgttctccaaggct |
113 |
Q |
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| T |
14864919 |
agacaaaaatccgttcacaccaaaagcatttctgaatcggtattgggacaaagagatccgcaacggtttaccgaaaccgtcatttctgttttccaaggct |
14865018 |
T |
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| Q |
114 |
tcaccgctatctaccgtggaagcagcgacgtttgcgaagctagcttcaggcaacatgctatccacacgcttgccggaattttgctcggccgccaacatcc |
213 |
Q |
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| T |
14865019 |
tcaccgctatccaccgtggaagcagcgacgttcgcgaagctagcttccggcaacgtgttatccacgcgcctgccggaattttgctcagccgcgaacctac |
14865118 |
T |
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| Q |
214 |
tctgcttcccggaagtagcccagagtcttgaaaagcacgaaggtgatgaaaatttcaaggcttacagcgataagaatttcaccaactacggaacg |
308 |
Q |
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| T |
14865119 |
tctgcttgccggaagtagcccagagtctcgaaaagcacggagatgatgtaaatttcgccatttacagagacaagaacttcaccaactacggaacg |
14865213 |
T |
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