View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4261_low_9 (Length: 328)
Name: NF4261_low_9
Description: NF4261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4261_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 46873118 - 46872869
Alignment:
| Q |
1 |
ccattgcaatacttcttgcacagtttcatcttgtttatgannnnnnnatcttcgttgcacgaaccaactagcttctgcgaatttggaggtggttgcctta |
100 |
Q |
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| T |
46873118 |
ccattgcaatacttcttgcacagtttcatcttgtttatgatttttttatcttcgttgcacggaccaactagcttctgcgaatttggaggtggttgcctta |
46873019 |
T |
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| Q |
101 |
tctcttcagccccatgagcaaagttgcaatttgttccgtttctacaagcaccaaatctgaacttagtacaaatctgtgttttgtagaaaatgtggtctga |
200 |
Q |
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| T |
46873018 |
tctcttcagccccatgagcaaagttgcaatttgttccgtttctacaagcaccaaatatgaacttagtacaaatccgtgttttgtagaaaatgtggtctga |
46872919 |
T |
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| Q |
201 |
tctgtttgattgaggaagggtcatccttggaggagggcatatcaatgcat |
250 |
Q |
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| T |
46872918 |
tctgtttgattgaggaagggtcatccttggaggagggcatatcaatgcat |
46872869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 63 - 311
Target Start/End: Complemental strand, 46890348 - 46890100
Alignment:
| Q |
63 |
accaactagcttctgcgaatttggaggtggttgccttatctcttcagccccatgagcaaagttgcaatttgttccgtttctacaagcaccaaatctgaac |
162 |
Q |
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| T |
46890348 |
accaactaacttctgccaatgtggtggtggttgccttaactcttcagctccatgagcaaagttgcaattttgtccgtttctacaagtaccaaatctgaac |
46890249 |
T |
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| Q |
163 |
ttagtacaaatctgtgttttgtagaaaatgtggtctgatctgtttgattgaggaagggtcatccttggaggagggcatatcaatgcattggaatgagaag |
262 |
Q |
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| T |
46890248 |
ttagtacaaattcgtgttttgtagaaaatgtggtctgatttgtttgattgaggcagggtcatccttggaggaggacatatcaatgcattggaaggagaag |
46890149 |
T |
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| Q |
263 |
ttccttctcttttgaagtcattgttgttcaatgaagcgaactgcggtgg |
311 |
Q |
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| T |
46890148 |
ttccttctcttttgaagtcattgttgctcaatgaagcgaattgcggtgg |
46890100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 231 - 312
Target Start/End: Complemental strand, 46872864 - 46872783
Alignment:
| Q |
231 |
aggagggcatatcaatgcattggaatgagaagttccttctcttttgaagtcattgttgttcaatgaagcgaactgcggtggt |
312 |
Q |
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| T |
46872864 |
aggagggcatatcaatgcattggaatgagaagttccttctcttttgaagtcatcgttgttcaatgaagcgaactgcggtggt |
46872783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 103 - 255
Target Start/End: Complemental strand, 46863763 - 46863611
Alignment:
| Q |
103 |
tcttcagccccatgagcaaagttgcaatttgttccgtttctacaagcaccaaatctgaacttagtacaaatctgtgttttgtagaaaatgtggtctgatc |
202 |
Q |
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| T |
46863763 |
tcttcaaccccatgagcaaagttgcaatctttaccgtttctacaagtaccaaacctgaacttagtacagattcgagtcttgtagaaaatgtgggttgctc |
46863664 |
T |
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| Q |
203 |
tgtttgattgaggaagggtcatccttggaggagggcatatcaatgcattggaa |
255 |
Q |
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| T |
46863663 |
tgtttgatggaggcagaaccatctttggaggaaggcatatcaatgcattggaa |
46863611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 88 - 167
Target Start/End: Complemental strand, 46898876 - 46898797
Alignment:
| Q |
88 |
ggtggttgccttatctcttcagccccatgagcaaagttgcaatttgttccgtttctacaagcaccaaatctgaacttagt |
167 |
Q |
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| T |
46898876 |
ggtggctgccttatctcatcagccccgtgagcgtagttgcaattttcaccgtttctacaagtaccaaacctgaacttagt |
46898797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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