View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4262_low_1 (Length: 686)
Name: NF4262_low_1
Description: NF4262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4262_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 36116027 - 36116292
Alignment:
| Q |
18 |
aaaagaagcatccaggctgcatgtcatgtggtataggtgaaatttcacattcagaaaactaatactaccaccaaaagtgttgaacaggttatagtcatta |
117 |
Q |
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| T |
36116027 |
aaaagaagcatccaggctgcatgtcatgtggtataggtgaaatttcacattcagaaaactaatactaccaccaaaagtgttgaacaggttatagtcatta |
36116126 |
T |
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| Q |
118 |
ggaccctgaaatcaacgtctaatatggatatagattgctgatccgttaaaggtacgaaaaagttatgaacaggttccatcaattaaagtctcaaatcaat |
217 |
Q |
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| T |
36116127 |
ggaccctgaaatcaacgtctaatatggatatagattgctgatccgttaaaggtacgaaaaagttatgaacaggttccatcaattaaagtctcaaatcaat |
36116226 |
T |
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| Q |
218 |
gctatccaaacagccttagattcattgattaaaatcacaaatttgtgttcagtgtaaaagcaaact |
283 |
Q |
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| T |
36116227 |
gctatccaaacagccttagattcattgattaaaatcacaaatttgtgttcaatgtaaaagcaaact |
36116292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 337 - 680
Target Start/End: Original strand, 36116346 - 36116683
Alignment:
| Q |
337 |
acacccttacaaaaaggggggaaaaatcgttttagt-------acaataagtcgttatcatattaatcataaatgtattaaaattgcaaacatatgtctg |
429 |
Q |
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| T |
36116346 |
acacccttacaaaaaggggg--aaaatcgttttagtgcttagaacgataagtcgttatcatattaatcctaaatgtattgaaattgcaaatatatgtcta |
36116443 |
T |
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| Q |
430 |
aaacatattcgatgattgaatcgattactaacatatttaaggagtaaaataactaataaaataatacttgtgaatatatttgtaattttgatatattcct |
529 |
Q |
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| T |
36116444 |
aaacatattcgatgattgaatcgattactaacatatttaa------------ctaataaaataatatctgtgaatatatttgtaattttgatatattcgt |
36116531 |
T |
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| Q |
530 |
agatcaatatacaaaagttatacttttatggatcaaaatgagttgaccccttacaaatattttgtagcttattgcaccttgtattgtaggacc-cccaac |
628 |
Q |
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| T |
36116532 |
agatcaatatacaaaagttatacttttatggatcaaaatgagttgaccccttacaaatattttgtagcttattgcaccttgtattgtaggaccacccaac |
36116631 |
T |
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| Q |
629 |
ccacatcccttaaccccttccttacctttattattccatgccttcatctcac |
680 |
Q |
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| T |
36116632 |
ccacatcccttaaccccttccttacctttattattccatgccttcttctcac |
36116683 |
T |
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