View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4263-Insertion-1 (Length: 280)
Name: NF4263-Insertion-1
Description: NF4263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4263-Insertion-1 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 26 - 280
Target Start/End: Complemental strand, 20373507 - 20373254
Alignment:
| Q |
26 |
tggtggacaaaggaaaattggcatgttgagtgtttcattggctaaacctaatggagaggtttttggaggtggtgttgagaacacattgatagctgctact |
125 |
Q |
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| T |
20373507 |
tggtgcacaaaggaaaattggcatgttgagtgtttcattggctaaacctaatggagaggtttttggaggtggtgttgagaacacattgatagctgctact |
20373408 |
T |
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| Q |
126 |
cctactcaagtaagaattattttcaacatccacatgtagagtctgaattgatttagattagtttatttatncagagattatcctttgattttcatttgag |
225 |
Q |
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| T |
20373407 |
cccactcaagtaagaattattttcaacatccacatgtacagtctgaattgattttgattagtttatttatgcagagattagcctttga-tttcatttgag |
20373309 |
T |
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| Q |
226 |
attacaatgctgttgttaataacctcttattttgcggttgcatttgtggttacac |
280 |
Q |
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| T |
20373308 |
attacaatgttgttgttaataacctcttattttgcggttgcatttgtggttacac |
20373254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 12 - 279
Target Start/End: Complemental strand, 20365847 - 20365570
Alignment:
| Q |
12 |
agtggtgctgctggtggtggacaaaggaaaattggcatgttgagtgtttcattggctaaacctaatggagaggtttttggaggtggtgttgagaacacat |
111 |
Q |
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| T |
20365847 |
agtggtgctgctggtggtgcacaaaggaaaattggcatgttgagtgtttcattggcaaaacctaatggagaggtttttggaggtggtgttgagaacacat |
20365748 |
T |
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| Q |
112 |
tgatagctgctactcctactcaagtaagaattattttcaacatccacatgtagagtctgaattga---tttagattagtttatttatncagagattatcc |
208 |
Q |
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| T |
20365747 |
tgatagctgctactcctactcaagtaagaattattttcaacatccatatgtagagtctgaattgaattattagattaatttatttatgtagagattatcc |
20365648 |
T |
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| Q |
209 |
tttgattttcatttgagattacaatgctgttgttaataacctc--------ttattttgcggttgcatttgtggttaca |
279 |
Q |
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| T |
20365647 |
tttga-tttcatttgagattacaatgctgttgttaataacctcttgaagctttattttgcggttgcatttgtggttaca |
20365570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 12 - 214
Target Start/End: Complemental strand, 20386168 - 20385967
Alignment:
| Q |
12 |
agtggtgctgctggtggtggacaaaggaaaattggcatgttgagtgtttcattggctaaacctaatggagaggtttttggaggtggtgttgagaacacat |
111 |
Q |
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| T |
20386168 |
agtggtgctgttggtggtgcacaaaggaaaatttgcatgttgagtgtttcattggctaaacctaatggagaggtttttggaggtggtgttgagaacacat |
20386069 |
T |
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| Q |
112 |
tgatagctgctactcctactcaagtaagaattattttcaacatccacatgtagagtctgaattgatttagattagtttatttatncagagattatccttt |
211 |
Q |
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| T |
20386068 |
tgatagccgcttctcctactcaagtaagaattattttcaacatccatatgtagagtttgaattgaatta-attaattaatttatgtacagattatccttt |
20385970 |
T |
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| Q |
212 |
gat |
214 |
Q |
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| T |
20385969 |
gat |
20385967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 125
Target Start/End: Complemental strand, 20344814 - 20344702
Alignment:
| Q |
13 |
gtggtgctgctggtggtggacaaaggaaaattggcatgttgagtgtttcattggctaaacctaatggagaggtttttggaggtggtgttgagaacacatt |
112 |
Q |
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| T |
20344814 |
gtggtgctgctggtggttcacaaaggaaaattggcatgttgagtgtttcattggctcaacctgatggcaaggtttttggaggtcgtgttgacaacttatt |
20344715 |
T |
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| Q |
113 |
gatagctgctact |
125 |
Q |
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| T |
20344714 |
gatagctgctact |
20344702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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