View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4263-Insertion-3 (Length: 246)
Name: NF4263-Insertion-3
Description: NF4263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4263-Insertion-3 |
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| [»] chr7 (2 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 9676639 - 9676393
Alignment:
| Q |
1 |
gtgttggcacataagaagggctaatcaaaccagcttgcagtttttcccgtactatatgacaatctatttcaatatgctttgtaagctcatgaaatacagg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
9676639 |
gtgttggcacataagaagggctaatcaaaccagcttgcagtttttcccgtactatatgacaatctatttcaatatgctttgtatgctcatgaaatacagg |
9676540 |
T |
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| Q |
101 |
atttgctgcaatgtgtaaagctgcctggttgtcacaaaataatggtg-tggagcagcaagtgagactttcaaatcttgtaatatgaaccgtagccaagtc |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9676539 |
atttgctgcaatgtgtaaagctgcctggttgtcacaaaataatggtgttggagcagcaagtgagactttcaaatcttgtaatatgaaccgtagccaagtc |
9676440 |
T |
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| Q |
200 |
agctccaaacatgtattagccatagctcgatattcagattctgctga |
246 |
Q |
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| T |
9676439 |
agctccaaacatgtattagccatagctcgatattcagattctgctga |
9676393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 11050795 - 11051038
Alignment:
| Q |
1 |
gtgttggcacataagaagggctaatcaaaccagcttgcagtttttcccgtactatatgacaatctatttcaatatgctttgtaagctcatgaaatacagg |
100 |
Q |
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|||||| ||| |||||||| ||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
11050795 |
gtgttgacacgtaagaaggactaatcatactagcttgcagtttttcccgta---tatgacaatctatttcaatatgctttgtacgctcatgaaatacagg |
11050891 |
T |
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| Q |
101 |
atttgctgcaatgtgtaaagctgcctggttgtcacaaaataatggtg-tggagcagcaagtgagactttcaaatcttgtaatatgaaccgtagccaagtc |
199 |
Q |
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| T |
11050892 |
atttgccgcaatgtgtagagctgcctggttgtcacaaaataatggtgttggtgcagccagtggaactttcaaatcttgtaatatgaaccgtagccaagtc |
11050991 |
T |
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| Q |
200 |
agctccaaacatgtattagccatagctcgatattcagattctgctga |
246 |
Q |
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| T |
11050992 |
tggtccaaacatgtattagccatagctcgatattccgattctgctga |
11051038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 25069534 - 25069288
Alignment:
| Q |
1 |
gtgttggcacataagaagggctaatcaaaccagcttgcagtttttcccgtactatatgacaatctatttcaatatgctttgtaagctcatgaaatacagg |
100 |
Q |
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| T |
25069534 |
gtgttggcacataagaagggctaatcaaaccagcttgcagtttttcccgtactatatgacaatctatttcaatatgctttgtacgctcatgaaatacagg |
25069435 |
T |
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| Q |
101 |
atttgctgcaatgtgtaaagctgcctggttgtcacaaaataatggtg-tggagcagcaagtgagactttcaaatcttgtaatatgaaccgtagccaagtc |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25069434 |
atttgctgcaatgtgtaaagctgcctggttgtcacaaaataatggtgttggagcagcaagtgagactttcaaatcttgtaatatgaaccgtagccaagtc |
25069335 |
T |
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| Q |
200 |
agctccaaacatgtattagccatagctcgatattcagattctgctga |
246 |
Q |
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| T |
25069334 |
agctccaaacatgtattagccatagctcgatattcagattctgctga |
25069288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 112
Target Start/End: Original strand, 16988741 - 16988823
Alignment:
| Q |
30 |
ccagcttgcagtttttcccgtactatatgacaatctatttcaatatgctttgtaagctcatgaaatacaggatttgctgcaat |
112 |
Q |
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| T |
16988741 |
ccagcttgaagtttctcccttacaatgtggcaatctatttcaagatgttttgtacgctcatgaaagacaggattagctgcaat |
16988823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 13541583 - 13541436
Alignment:
| Q |
1 |
gtgttggcacataagaagggctaatcaaaccagcttgcagtttttcccgtactatatgacaatctatttcaatatgctttgtaagctcatgaaatacagg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
13541583 |
gtgttggcacataagaagggctaatcaaaccagcttgcagtttttcccgtactatatgacaatctatttcaatatgctttgtatgctcatgaaatacagg |
13541484 |
T |
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| Q |
101 |
atttgctgcaatgtgtaaagctgcctggttgtcacaaaataatggtgt |
148 |
Q |
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| T |
13541483 |
atttgctgcaatgtgtaaagctgcctggttgtcacaaaataatggtgt |
13541436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 20481577 - 20481649
Alignment:
| Q |
30 |
ccagcttgcagtttttcccgtactatatgacaatctatttcaatatgctttgtaagctcatgaaatacaggat |
102 |
Q |
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| T |
20481577 |
ccagcttgaagtttctcccttacaatgtggcaatctatttcaagatgttttgtacgctcatgaaagacaggat |
20481649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 112
Target Start/End: Complemental strand, 28019611 - 28019529
Alignment:
| Q |
30 |
ccagcttgcagtttttcccgtactatatgacaatctatttcaatatgctttgtaagctcatgaaatacaggatttgctgcaat |
112 |
Q |
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| T |
28019611 |
ccagcttgaagtttctccctcacaatgtggcaatctatttcaagatgttttgtgcgctcatgaaagacaggattagctgcaat |
28019529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 112
Target Start/End: Complemental strand, 6344582 - 6344500
Alignment:
| Q |
30 |
ccagcttgcagtttttcccgtactatatgacaatctatttcaatatgctttgtaagctcatgaaatacaggatttgctgcaat |
112 |
Q |
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|||||||| ||||| |||| || || || ||||||||||||| ||| ||||| |||||||||| |||||||| |||||||| |
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| T |
6344582 |
ccagcttgaagtttctccctcacaatgtggcaatctatttcaagatgttttgtgcgctcatgaaagacaggattagctgcaat |
6344500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 103
Target Start/End: Original strand, 18432102 - 18432163
Alignment:
| Q |
42 |
ttttcccgtactatatgacaatctatttcaatatgctttgtaagctcatgaaatacaggatt |
103 |
Q |
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| T |
18432102 |
ttttcccttactagatgacaatctatttcaaggtgctttgttctctcatgaaacacaggatt |
18432163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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