View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4263-Insertion-4 (Length: 167)
Name: NF4263-Insertion-4
Description: NF4263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4263-Insertion-4 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 1e-82; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 1e-82
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 2678102 - 2677936
Alignment:
| Q |
1 |
catcccaatacactacctcattcttggttactgaaagttgtggcttgaaggctgtaactcctataaacgatgtccaatcatcggaattaaaacgaacgcc |
100 |
Q |
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| T |
2678102 |
catcccaatacactacctcattcttggttactgaaagttgtggcttgaaggctgtaactcctataaacgatgtccaatcatcggaattaaaacgaacgcc |
2678003 |
T |
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| Q |
101 |
attccaaatcccacttctaaatgtgatgttctttccttggcaaatcactaactcagcaaattcttta |
167 |
Q |
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| T |
2678002 |
attccaaatcccacttctaaacgtgatgttctttccttggtgaatcactaactcagcaaattcttta |
2677936 |
T |
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Target: chr2; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 3052505 - 3052613
Alignment:
| Q |
1 |
catcccaatacactacctcattcttggttactgaaagttgtggcttgaaggctgtaactcctataaacgatgtccaatcatcggaattaaaacgaacgcc |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||| | | ||| | |||| |||| |||||||||||||||||||||||| ||||| |
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| T |
3052505 |
catcccaattcactacctcattcttggttactgaaagttgtggcctaagggc---cattcctgtaaaagatgtccaatcatcggaattaaaagcgacgcc |
3052601 |
T |
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| Q |
101 |
attccaaatccc |
112 |
Q |
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| T |
3052602 |
attccaaatccc |
3052613 |
T |
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