View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4263-Insertion-5 (Length: 93)

Name: NF4263-Insertion-5
Description: NF4263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4263-Insertion-5
NF4263-Insertion-5
[»] chr4 (3 HSPs)
chr4 (1-89)||(27548416-27548504)
chr4 (3-63)||(27437895-27437953)
chr4 (1-63)||(27946256-27946316)


Alignment Details
Target: chr4 (Bit Score: 81; Significance: 1e-38; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 1e-38
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 27548504 - 27548416
Alignment:
Q  1 tatagtccatgactgtgtatcttttctactctctaacttttgtctactgaaattttagatatatacctgtaactctaaatttccaaaat 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  27548504 tatagtccatgactgtgtatcttttctactctctaacttttgtctactcaaattttagatatatacctctaactctaaatttccaaaat 27548416  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 27437895 - 27437953
Alignment:
Q  3 tagtccatgactgtgtatcttttctactctctaacttttgtctactgaaattttagatata 63  Q
    ||||||||||||||  |||||||||||||||||| |||||| |||||||||||||||||||    
T  27437895 tagtccatgactgt--atcttttctactctctaagttttgtttactgaaattttagatata 27437953  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 27946256 - 27946316
Alignment:
Q  1 tatagtccatgactgtgtatcttttctactctctaacttttgtctactgaaattttagatata 63  Q
    ||||||||||||||||  |||||||||||| ||||  |||||| |||||||||||||||||||    
T  27946256 tatagtccatgactgt--atcttttctactttctatgttttgtttactgaaattttagatata 27946316  T

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