View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4263-Insertion-6 (Length: 120)

Name: NF4263-Insertion-6
Description: NF4263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4263-Insertion-6
NF4263-Insertion-6
[»] chr3 (26 HSPs)
chr3 (1-119)||(19380318-19380436)
chr3 (1-119)||(19419408-19419526)
chr3 (1-84)||(17941192-17941275)
chr3 (1-83)||(18146279-18146361)
chr3 (22-91)||(17728170-17728239)
chr3 (22-91)||(19029399-19029468)
chr3 (1-83)||(19350858-19350940)
chr3 (1-83)||(19436329-19436411)
chr3 (1-85)||(18115412-18115496)
chr3 (1-100)||(18015538-18015637)
chr3 (22-117)||(18107867-18107962)
chr3 (21-100)||(19375126-19375205)
chr3 (1-79)||(18022261-18022339)
chr3 (1-107)||(18164587-18164693)
chr3 (21-107)||(19333422-19333508)
chr3 (1-85)||(19392584-19392668)
chr3 (22-100)||(16676645-16676723)
chr3 (1-79)||(19399173-19399251)
chr3 (1-79)||(19460985-19461063)
chr3 (1-82)||(18102892-18102973)
chr3 (22-79)||(19413655-19413712)
chr3 (1-89)||(14896859-14896947)
chr3 (22-70)||(18143710-18143758)
chr3 (19-83)||(25462499-25462563)
chr3 (40-83)||(19424038-19424081)
chr3 (1-53)||(24493887-24493939)
[»] chr4 (1 HSPs)
chr4 (3-83)||(15531812-15531892)
[»] scaffold2156 (1 HSPs)
scaffold2156 (22-83)||(420-481)
[»] scaffold0640 (1 HSPs)
scaffold0640 (22-83)||(4849-4910)
[»] chr6 (1 HSPs)
chr6 (1-97)||(13667343-13667439)
[»] chr8 (1 HSPs)
chr8 (1-85)||(8458932-8459016)


Alignment Details
Target: chr3 (Bit Score: 107; Significance: 4e-54; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 4e-54
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 19380436 - 19380318
Alignment:
1 atcacatcaaaattattttcactcaaatccaagtaactaagaaactcaagttcaagaatacaaagattcatctcaccttccaaaactttgactggctcat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
19380436 atcacatcaaaattattttcactcaaatccaagtaactaagaaacttaagttcaagaatacaaagattcatctcaccttccaaaactttgactggctcat 19380337  T
101 attcaaacaaataagtgtt 119  Q
    ||||| | |||||||||||    
19380336 attcataaaaataagtgtt 19380318  T

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Target: chr3; HSP #2
Raw Score: 87; E-Value: 4e-42
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 19419526 - 19419408
Alignment:
1 atcacatcaaaattattttcactcaaatccaagtaactaagaaactcaagttcaagaatacaaagattcatctcaccttccaaaactttgactggctcat 100  Q
    ||||||| ||| ||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||    
19419526 atcacattaaatttattatgactcaaatccaagtaactaagaaactcaagttcaaaaatacaaagattcatctcaccttccaaaacattgactgactcat 19419427  T
101 attcaaacaaataagtgtt 119  Q
    ||||||| |||||||||||    
19419426 attcaaaaaaataagtgtt 19419408  T

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Target: chr3; HSP #3
Raw Score: 68; E-Value: 8e-31
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 17941275 - 17941192
Alignment:
1 atcacatcaaaattattttcactcaaatccaagtaactaagaaactcaagttcaagaatacaaagattcatctcaccttccaaa 84  Q
    ||||||||||| ||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||    
17941275 atcacatcaaatttattatcactcaaatccaaataactgagaaactcaagttcaagaatacaaagattcatctcaccttccaaa 17941192  T

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Target: chr3; HSP #4
Raw Score: 67; E-Value: 3e-30
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 18146361 - 18146279
Alignment:
1 atcacatcaaaattattttcactcaaatccaagtaactaagaaactcaagttcaagaatacaaagattcatctcaccttccaa 83  Q
    |||| |||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
18146361 atcatatcaaaataattatcactcaaatccaagtaattaagaaactcaagttcaagaatacaaagattcatctcaccttccaa 18146279  T

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Target: chr3; HSP #5
Raw Score: 66; E-Value: 1e-29
Query Start/End: Original strand, 22 - 91
Target Start/End: Original strand, 17728170 - 17728239
Alignment:
22 ctcaaatccaagtaactaagaaactcaagttcaagaatacaaagattcatctcaccttccaaaactttga 91  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
17728170 ctcaaatccaagtaactaagaaactcaagttcaagaatacaaagattcatctcaccttccaaaacattga 17728239  T

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Target: chr3; HSP #6
Raw Score: 66; E-Value: 1e-29
Query Start/End: Original strand, 22 - 91
Target Start/End: Original strand, 19029399 - 19029468
Alignment:
22 ctcaaatccaagtaactaagaaactcaagttcaagaatacaaagattcatctcaccttccaaaactttga 91  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
19029399 ctcaaatccaagtaactaagaaactcaagttcaagaatacaaagattcatctcaccttccaaaacattga 19029468  T

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Target: chr3; HSP #7
Raw Score: 63; E-Value: 8e-28
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 19350940 - 19350858
Alignment:
1 atcacatcaaaattattttcactcaaatccaagtaactaagaaactcaagttcaagaatacaaagattcatctcaccttccaa 83  Q
    ||||||||||||| ||| ||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
19350940 atcacatcaaaatgattctcactcaaacccaagtaactgagaaactcaagttctagaatacaaagattcatctcaccttccaa 19350858  T

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Target: chr3; HSP #8
Raw Score: 63; E-Value: 8e-28
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 19436411 - 19436329
Alignment:
1 atcacatcaaaattattttcactcaaatccaagtaactaagaaactcaagttcaagaatacaaagattcatctcaccttccaa 83  Q
    ||||||||||||| |||  |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
19436411 atcacatcaaaatcattcacactcaaatccaagtaactaagaaactcaagttttagaatacaaagattcatctcaccttccaa 19436329  T

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Target: chr3; HSP #9
Raw Score: 57; E-Value: 3e-24
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 18115496 - 18115412
Alignment:
1 atcacatcaaaattattttcactcaaatccaagtaactaagaaactcaagttcaagaatacaaagattcatctcaccttccaaaa 85  Q
    ||||||||||||| ||||   ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||    
18115496 atcacatcaaaatcatttgagctcaaatccaagtaactgagaaactcaagttctagaatacaaagattcatctcacctttcaaaa 18115412  T

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Target: chr3; HSP #10
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 18015637 - 18015538
Alignment:
1 atcacatcaaaattattttcactcaaatccaagtaactaagaaactcaagttcaagaatacaaagattcatctcaccttccaaaactttgactggctcat 100  Q
    ||||||||||| | |||   |||||||||||||||||||||||| |||||||| | |||||||| |||||||||||||| ||||||||||||||| ||||    
18015637 atcacatcaaattcattgaaactcaaatccaagtaactaagaaattcaagttctaaaatacaaaaattcatctcacctttcaaaactttgactggatcat 18015538  T

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Target: chr3; HSP #11
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 22 - 117
Target Start/End: Complemental strand, 18107962 - 18107867
Alignment:
22 ctcaaatccaagtaactaagaaactcaagttcaagaatacaaagattcatctcaccttccaaaactttgactggctcatattcaaacaaataagtg 117  Q
    |||||||| || ||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||| || | | |||||||||| |||||||||    
18107962 ctcaaatctaaataactgagaaactcaaggtcaagaatacaaagattcatctcacctttcaaaactttaacggacgcatattcaaaaaaataagtg 18107867  T

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Target: chr3; HSP #12
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 21 - 100
Target Start/End: Complemental strand, 19375205 - 19375126
Alignment:
21 actcaaatccaagtaactaagaaactcaagttcaagaatacaaagattcatctcaccttccaaaactttgactggctcat 100  Q
    |||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||| ||||| |||||||| |||||    
19375205 actcaaatccaagtaactgagaaactcaagttctagaatataaagattcatctcacctttcaaaagtttgactgactcat 19375126  T

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Target: chr3; HSP #13
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 18022339 - 18022261
Alignment:
1 atcacatcaaaattattttcactcaaatccaagtaactaagaaactcaagttcaagaatacaaagattcatctcacctt 79  Q
    ||||||||||| | ||| | |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
18022339 atcacatcaaattcattatgactcaaatccaaataactaagaaactcaagttcaagaatacaaagattcagctcacctt 18022261  T

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Target: chr3; HSP #14
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 18164693 - 18164587
Alignment:
1 atcacatcaaaattattttcactcaaatccaagtaactaagaaactcaagttcaagaatacaaagattcatctcaccttccaaaactttgactggctcat 100  Q
    ||||||||||||| |||   |||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||| ||||  | ||| ||||||||    
18164693 atcacatcaaaatcattaagactcaaatccaagtgactgagaaactcaagttctagaatacaaagattcatctcacctttcaaatatctgattggctcat 18164594  T
101 attcaaa 107  Q
     ||||||    
18164593 cttcaaa 18164587  T

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Target: chr3; HSP #15
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 19333508 - 19333422
Alignment:
21 actcaaatccaagtaactaagaaactcaagttcaagaatacaaagattcatctcaccttccaaaactttgactggctcatattcaaa 107  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||| | ||| || ||||| ||||||    
19333508 actcaaatccaagtaactgagaaactcaagttctagaatacaaagattcatctcacctttcaaaaatctgattgactcatcttcaaa 19333422  T

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Target: chr3; HSP #16
Raw Score: 53; E-Value: 7e-22
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 19392668 - 19392584
Alignment:
1 atcacatcaaaattattttcactcaaatccaagtaactaagaaactcaagttcaagaatacaaagattcatctcaccttccaaaa 85  Q
    ||||| ||||||| |||  | ||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||    
19392668 atcacgtcaaaatcattcccgctcaaatccaagtaacttagaaactcaagttgtagaatacaaagattcatctcaccttccaaaa 19392584  T

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Target: chr3; HSP #17
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 22 - 100
Target Start/End: Complemental strand, 16676723 - 16676645
Alignment:
22 ctcaaatccaagtaactaagaaactcaagttcaagaatacaaagattcatctcaccttccaaaactttgactggctcat 100  Q
    ||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||  || ||||||| ||||||||    
16676723 ctcaaatccaagtaaattagaaactcaagttctagaatacaaagattcatctcaccttttaagactttgattggctcat 16676645  T

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Target: chr3; HSP #18
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 19399251 - 19399173
Alignment:
1 atcacatcaaaattattttcactcaaatccaagtaactaagaaactcaagttcaagaatacaaagattcatctcacctt 79  Q
    ||||||| ||| | ||| |||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||    
19399251 atcacatgaaattcattctcactcaaatccaagtaactgagaaactcaagttctagaatacagagattcatctcacctt 19399173  T

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Target: chr3; HSP #19
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 19461063 - 19460985
Alignment:
1 atcacatcaaaattattttcactcaaatccaagtaactaagaaactcaagttcaagaatacaaagattcatctcacctt 79  Q
    ||||||||||| | |||   |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
19461063 atcacatcaaattcattcagactcaaatccaagtaactgagaaactcaagttctagaatacaaagattcatctcacctt 19460985  T

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Target: chr3; HSP #20
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 18102973 - 18102892
Alignment:
1 atcacatcaaaattattttcactcaaatccaagtaactaagaaactcaagttcaagaatacaaagattcatctcaccttcca 82  Q
    ||||||||||||| |||    ||||||||||||||| | |||||||||||| ||||||||||||||||||| ||||||||||    
18102973 atcacatcaaaatgattccagctcaaatccaagtaattgagaaactcaagtccaagaatacaaagattcatatcaccttcca 18102892  T

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Target: chr3; HSP #21
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 19413712 - 19413655
Alignment:
22 ctcaaatccaagtaactaagaaactcaagttcaagaatacaaagattcatctcacctt 79  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||    
19413712 ctcaaatccaagtaactgagaaactcaagttctagaatacaaagattcatctcccctt 19413655  T

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Target: chr3; HSP #22
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 14896859 - 14896947
Alignment:
1 atcacatcaaaattattttcactcaaatccaagtaactaagaaactcaagttcaagaatacaaagattcatctcaccttccaaaacttt 89  Q
    ||||||||||||| |||   ||||||||| |||||||| |||||||| ||||| |||||||||||| |||||||||||| |||| ||||    
14896859 atcacatcaaaatgattcatactcaaatctaagtaactgagaaactccagttcgagaatacaaagactcatctcacctttcaaatcttt 14896947  T

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Target: chr3; HSP #23
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 18143758 - 18143710
Alignment:
22 ctcaaatccaagtaactaagaaactcaagttcaagaatacaaagattca 70  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||    
18143758 ctcaaatccaagtaactaagaaactcaagttctagaatacaaagattca 18143710  T

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Target: chr3; HSP #24
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 25462563 - 25462499
Alignment:
19 tcactcaaatccaagtaactaagaaactcaagttcaagaatacaaagattcatctcaccttccaa 83  Q
    ||||| |||||||||||||| |||||||||||||| |||| ||| ||||||||||||||||||||    
25462563 tcacttaaatccaagtaactgagaaactcaagttctagaacacatagattcatctcaccttccaa 25462499  T

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Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 83
Target Start/End: Complemental strand, 19424081 - 19424038
Alignment:
40 agaaactcaagttcaagaatacaaagattcatctcaccttccaa 83  Q
    |||||||||||||| |||||||||||||| ||||||||||||||    
19424081 agaaactcaagttcgagaatacaaagattgatctcaccttccaa 19424038  T

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Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 24493887 - 24493939
Alignment:
1 atcacatcaaaattattttcactcaaatccaagtaactaagaaactcaagttc 53  Q
    |||| ||||||||  || || ||||| ||||||||||||||||||||||||||    
24493887 atcaaatcaaaatcgttatcgctcaagtccaagtaactaagaaactcaagttc 24493939  T

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Target: chr4 (Bit Score: 53; Significance: 7e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 7e-22
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 15531892 - 15531812
Alignment:
3 cacatcaaaattattttcactcaaatccaagtaactaagaaactcaagttcaagaatacaaagattcatctcaccttccaa 83  Q
    ||||||||||| |||   ||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||    
15531892 cacatcaaaatcattccgactcaaatcgaagtaactaagaaactcaagttttagaatacaaagattcatctcaccttccaa 15531812  T

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Target: scaffold2156 (Bit Score: 50; Significance: 4e-20; HSPs: 1)
Name: scaffold2156
Description:

Target: scaffold2156; HSP #1
Raw Score: 50; E-Value: 4e-20
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 420 - 481
Alignment:
22 ctcaaatccaagtaactaagaaactcaagttcaagaatacaaagattcatctcaccttccaa 83  Q
    ||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||    
420 ctcaaatccaagtaactcaaaaactcaagttctagaatacaaagattcatctcaccttccaa 481  T

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Target: scaffold0640 (Bit Score: 50; Significance: 4e-20; HSPs: 1)
Name: scaffold0640
Description:

Target: scaffold0640; HSP #1
Raw Score: 50; E-Value: 4e-20
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 4910 - 4849
Alignment:
22 ctcaaatccaagtaactaagaaactcaagttcaagaatacaaagattcatctcaccttccaa 83  Q
    ||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||    
4910 ctcaaatccaagtaactcaaaaactcaagttctagaatacaaagattcatctcaccttccaa 4849  T

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Target: chr6 (Bit Score: 49; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 13667343 - 13667439
Alignment:
1 atcacatcaaaattattttcactcaaatccaagtaactaagaaactcaagttcaagaatacaaagattcatctcaccttccaaaactttgactggct 97  Q
    ||||||||||| | ||| | |||||||||||| || || ||||||| |||||| ||||||||||||||||||| ||||| ||||||||||| |||||    
13667343 atcacatcaaattcattatgactcaaatccaaatagctgagaaacttaagttctagaatacaaagattcatcttacctttcaaaactttgattggct 13667439  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 8459016 - 8458932
Alignment:
1 atcacatcaaaattattttcactcaaatccaagtaactaagaaactcaagttcaagaatacaaagattcatctcaccttccaaaa 85  Q
    ||||||||||| |||| |   ||||||||||||||||| |||||||||||||| |||||  ||||||| |||| |||||||||||    
8459016 atcacatcaaatttatgtaagctcaaatccaagtaactcagaaactcaagttctagaatggaaagattgatcttaccttccaaaa 8458932  T

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