View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4263-Insertion-9 (Length: 96)
Name: NF4263-Insertion-9
Description: NF4263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4263-Insertion-9 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 92; Significance: 3e-45; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 3e-45
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 50556876 - 50556781
Alignment:
| Q |
1 |
aaaggatgattcgagctcttgttacagtcttcggaatggaaacaaatggaagaatcaagaaggaaaatgctaggcaagtggtggagaagcttggtt |
96 |
Q |
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| T |
50556876 |
aaaggatgattcgagctcttgttactgtcttcggaatggaaacaaatggaagaatcaagaaggaaaatgctaggcaagtggtggagaagcttggtt |
50556781 |
T |
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Target: chr3; HSP #2
Raw Score: 80; E-Value: 4e-38
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 50818390 - 50818295
Alignment:
| Q |
1 |
aaaggatgattcgagctcttgttacagtcttcggaatggaaacaaatggaagaatcaagaaggaaaatgctaggcaagtggtggagaagcttggtt |
96 |
Q |
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| T |
50818390 |
aaaggatgattcgagctctcgttactgtctttggaatggaaagaaatggaagaatcaagaaggaaaatgctaggcaagtggtggagaagcttggtt |
50818295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 80; E-Value: 4e-38
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 50857474 - 50857569
Alignment:
| Q |
1 |
aaaggatgattcgagctcttgttacagtcttcggaatggaaacaaatggaagaatcaagaaggaaaatgctaggcaagtggtggagaagcttggtt |
96 |
Q |
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||||||||||||||||||| ||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50857474 |
aaaggatgattcgagctctcgttactgtctttggaatggaaagaaatggaagaatcaagaaggaaaatgctaggcaagtggtggagaagcttggtt |
50857569 |
T |
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