View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4263_high_15 (Length: 247)
Name: NF4263_high_15
Description: NF4263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4263_high_15 |
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| [»] scaffold0062 (3 HSPs) |
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| [»] scaffold0443 (1 HSPs) |
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Alignment Details
Target: scaffold0062 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 48130 - 47889
Alignment:
| Q |
1 |
ttgtagaacttgtagtcaacccagttaattatctctttgttggcccaatacaattgatggtagtggggtttgagacgctctgttggagcaatggacacca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
48130 |
ttgtagaacttgtagtcaacccagttaattatgtctttgttggcccaatacaatttatggtagtggggtttgagaagctctgttggagcaatggacacca |
48031 |
T |
|
| Q |
101 |
gttttatggatttgcaactcttcttgagttttcttatgagttctcctatgcaggaagaaaactcatcctgattgcaattgctgtactcatagttaatatc |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
48030 |
gttttatggatttggaactcttcttgagttttcttatgagttctcctatgcaggaagaaaactcatccggattgcaattgctgtactcatagttaatatc |
47931 |
T |
|
| Q |
201 |
aataccatcaattatgtcatcgcaatggcacccgtctgtgct |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
47930 |
aataccatcaattatgtcatcgcaatggcactcgtcggtgct |
47889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 60669 - 60428
Alignment:
| Q |
1 |
ttgtagaacttgtagtcaacccagttaattatctctttgttggcccaatacaattgatggtagtggggtttgagacgctctgttggagcaatggacacca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
60669 |
ttgtagaacttgtagtcaacccagttaattatgtctttgttggcccaatacaatttatggtagtggggtttgagaagctctgttggagcaatggacacca |
60570 |
T |
|
| Q |
101 |
gttttatggatttgcaactcttcttgagttttcttatgagttctcctatgcaggaagaaaactcatcctgattgcaattgctgtactcatagttaatatc |
200 |
Q |
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|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
60569 |
gttttatggatttggaactcttcttgagttttcttatgagttctcctatgcaggaagaaaactcatccggattgcaattgctgtactcatagttaatatc |
60470 |
T |
|
| Q |
201 |
aataccatcaattatgtcatcgcaatggcacccgtctgtgct |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
60469 |
aataccatcaattatgtcatcgcaatggcactcgtcggtgct |
60428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 72788 - 72547
Alignment:
| Q |
1 |
ttgtagaacttgtagtcaacccagttaattatctctttgttggcccaatacaattgatggtagtggggtttgagacgctctgttggagcaatggacacca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
72788 |
ttgtagaacttgtagtcaacccagttaattatgtctttgttggcccaatacaatttatggtagtggggtttgagaagctctgttggagcaatggacacca |
72689 |
T |
|
| Q |
101 |
gttttatggatttgcaactcttcttgagttttcttatgagttctcctatgcaggaagaaaactcatcctgattgcaattgctgtactcatagttaatatc |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
72688 |
gttttatggatttggaactcttcttgagttttcttatgagttctcctatgcaggaagaaaactcatccggattgcaattgctgtactcatagttaatatc |
72589 |
T |
|
| Q |
201 |
aataccatcaattatgtcatcgcaatggcacccgtctgtgct |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
72588 |
aataccatcaattatgtcatcgcaatggcactcgtcggtgct |
72547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 18691479 - 18691238
Alignment:
| Q |
1 |
ttgtagaacttgtagtcaacccagttaattatctctttgttggcccaatacaattgatggtagtggggtttgagacgctctgttggagcaatggacacca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
18691479 |
ttgtagaacttgtagtcaacccagttaattatgtctttgttggcccaatacaatttatggtagtggggtttgagaagctctgttggagcaatggacacca |
18691380 |
T |
|
| Q |
101 |
gttttatggatttgcaactcttcttgagttttcttatgagttctcctatgcaggaagaaaactcatcctgattgcaattgctgtactcatagttaatatc |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
18691379 |
gttttatggatttggaactcttcttgagttttcttatgagttctcctatgcaggaagaaaactcatccggattgcaattgctgtactcatagttaatatc |
18691280 |
T |
|
| Q |
201 |
aataccatcaattatgtcatcgcaatggcacccgtctgtgct |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
18691279 |
aataccatcaattatgtcatcgcaatggcactcgtcggtgct |
18691238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 15699218 - 15698977
Alignment:
| Q |
1 |
ttgtagaacttgtagtcaacccagttaattatctctttgttggcccaatacaattgatggtagtggggtttgagacgctctgttggagcaatggacacca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
15699218 |
ttgtagaacttgtagtcaacccagttaattatgtctttgttggcccaatacaatttatggtagtggggtttgagaagctctgttggagcaatggacacca |
15699119 |
T |
|
| Q |
101 |
gttttatggatttgcaactcttcttgagttttcttatgagttctcctatgcaggaagaaaactcatcctgattgcaattgctgtactcatagttaatatc |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
15699118 |
gttttatggatttggaactcttcttgagttttcttatgagttctcctatgcaggaagaaaactcatccggattgcaattgctgtactcatagttaatatc |
15699019 |
T |
|
| Q |
201 |
aataccatcaattatgtcatcgcaatggcacccgtctgtgct |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
15699018 |
aataccatcaattatgtcatcgcaatggcactcgtcggtgct |
15698977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 15711757 - 15711516
Alignment:
| Q |
1 |
ttgtagaacttgtagtcaacccagttaattatctctttgttggcccaatacaattgatggtagtggggtttgagacgctctgttggagcaatggacacca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
15711757 |
ttgtagaacttgtagtcaacccagttaattatgtctttgttggcccaatacaatttatggtagtggggtttgagaagctctgttggagcaatggacacca |
15711658 |
T |
|
| Q |
101 |
gttttatggatttgcaactcttcttgagttttcttatgagttctcctatgcaggaagaaaactcatcctgattgcaattgctgtactcatagttaatatc |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
15711657 |
gttttatggatttggaactcttcttgagttttcttatgagttctcctatgcaggaagaaaactcatccggattgcaattgctgtactcatagttaatatc |
15711558 |
T |
|
| Q |
201 |
aataccatcaattatgtcatcgcaatggcacccgtctgtgct |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
15711557 |
aataccatcaattatgtcatcgcaatggcactcgtcggtgct |
15711516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 15724235 - 15723994
Alignment:
| Q |
1 |
ttgtagaacttgtagtcaacccagttaattatctctttgttggcccaatacaattgatggtagtggggtttgagacgctctgttggagcaatggacacca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
15724235 |
ttgtagaacttgtagtcaacccagttaattatgtctttgttggcccaatacaatttatggtagtggggtttgagaagctctgttggagcaatggacacca |
15724136 |
T |
|
| Q |
101 |
gttttatggatttgcaactcttcttgagttttcttatgagttctcctatgcaggaagaaaactcatcctgattgcaattgctgtactcatagttaatatc |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
15724135 |
gttttatggatttggaactcttcttgagttttcttatgagttctcctatgcaggaagaaaactcatccggattgcaattgctgtactcatagttaatatc |
15724036 |
T |
|
| Q |
201 |
aataccatcaattatgtcatcgcaatggcacccgtctgtgct |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
15724035 |
aataccatcaattatgtcatcgcaatggcactcgtcggtgct |
15723994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0443 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0443
Description:
Target: scaffold0443; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 216
Target Start/End: Complemental strand, 8933 - 8901
Alignment:
| Q |
184 |
tactcatagttaatatcaataccatcaattatg |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
8933 |
tactcatagttaatatcaataccatcaattatg |
8901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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