View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4263_high_2 (Length: 691)
Name: NF4263_high_2
Description: NF4263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4263_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-151; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 368 - 663
Target Start/End: Complemental strand, 38611569 - 38611279
Alignment:
| Q |
368 |
gtccgccatgctgcctgtttgaaagttgtgtggtcttgacctttcatcggccaagcacatcattaaaagttaatactactatactactcaatctgaataa |
467 |
Q |
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| T |
38611569 |
gtccgccatgctgcctgtttgaaagttgtgtggtcttgacctttcatcagccaagcacatcattaaaagttaatactacta-----ctcaatctgaataa |
38611475 |
T |
|
| Q |
468 |
acttgctgtcttttttggatggtgttgaataatttactttaaatgctgaaggttccatgatctgtttgagttcgatgaaaagaagagaagctgcagatga |
567 |
Q |
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| T |
38611474 |
acttgctgtcttttttggatggtgttgaataatttactttaaatgctgaaggttccatgatctgtttgagttcgatgaaaagaagagaagctgcagatga |
38611375 |
T |
|
| Q |
568 |
caactttcacgtcacaatacaagacaccgtaaatatcatcctgaatctgtccaatcaagtcaatcagctttgtcttcttcatcctgtggtaatacc |
663 |
Q |
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| T |
38611374 |
caactttcacgtcacaatacaagacaccgtaaatatcatcctgaatctgtccaatcaagtcaatcagctttgtcttcttcatcctgtggtaatacc |
38611279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 38612023 - 38611715
Alignment:
| Q |
1 |
acacatatattagtttgaaattgaaaggggaacatgaaatgaaaagttgaccttctccttccgattacaaaaatacatgttattcccgacctgcatagtt |
100 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
38612023 |
acacatatattagtttgaaattgaaaggggagcatgaaatgaaaagttgaccttctccttccgattacaaaaatacatggtattccccacctgcatagtt |
38611924 |
T |
|
| Q |
101 |
attatacaagtaagttaagagtaaattattggaaacaaaaacattgagatatccacagccannnnnnnnnnnnnnnnnnnacgctagattttgaggtgaa |
200 |
Q |
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| T |
38611923 |
attatacaagtaagttaagagtaaattattggaaacaaaaacattgagatatccacagccagtttgttgttgttgttgttacgctagattttgaggtgaa |
38611824 |
T |
|
| Q |
201 |
ggactgaagtggttgttttagctcttatcaaattcacgggtctacatcaaggagttctaaatcagattcaaacagttcatcttcaattagggatattagc |
300 |
Q |
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| T |
38611823 |
ggactgaagtggttgttttagctcttatcaaattcacgggtctacatcaaggagttctaaatcagattcaaacagttcatcatcaattagggatattagc |
38611724 |
T |
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| Q |
301 |
aaaacattt |
309 |
Q |
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||||||||| |
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| T |
38611723 |
aaaacattt |
38611715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 508 - 662
Target Start/End: Complemental strand, 34726741 - 34726587
Alignment:
| Q |
508 |
aaatgctgaaggttccatgatctgtttgagttcgatgaaaagaagagaagctgcagatgacaactttcacgtcacaatacaagacaccgtaaatatcatc |
607 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||| |||||||| |||||||||| ||||||||||| ||||||| |||| | |||||||||||||| |
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| T |
34726741 |
aaatgctgaaggttccatgatctgtttgagtttgatggaaagaagaaaagctgcagacgacaactttcaaatcacaatgcaaggcgccgtaaatatcatc |
34726642 |
T |
|
| Q |
608 |
ctgaatctgtccaatcaagtcaatcagctttgtcttcttcatcctgtggtaatac |
662 |
Q |
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| || ||||||||||||| ||||| |||||||||| |||| | |||||||||| |
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| T |
34726641 |
gtcaagctgtccaatcaagccaatcggctttgtcttattcacgcagtggtaatac |
34726587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 508 - 662
Target Start/End: Complemental strand, 34721613 - 34721459
Alignment:
| Q |
508 |
aaatgctgaaggttccatgatctgtttgagttcgatgaaaagaagagaagctgcagatgacaactttcacgtcacaatacaagacaccgtaaatatcatc |
607 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||| |||||||| |||||||||| ||| ||||||| |||||| |||| | |||||| || || |
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| T |
34721613 |
aaatactgaaggttccatgatctgtttgagtttgatggaaagaagaaaagctgcagacgacgtctttcacaacacaatgcaaggcgccgtaatcattctc |
34721514 |
T |
|
| Q |
608 |
ctgaatctgtccaatcaagtcaatcagctttgtcttcttcatcctgtggtaatac |
662 |
Q |
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| || ||| ||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
34721513 |
gtaaaactgcccaatcaagtcaatcagctttgtcttcgtcaccctgtggtaatac |
34721459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 511 - 644
Target Start/End: Complemental strand, 34730952 - 34730819
Alignment:
| Q |
511 |
tgctgaaggttccatgatctgtttgagttcgatgaaaagaagagaagctgcagatgacaactttcacgtcacaatacaagacaccgtaaatatcatcctg |
610 |
Q |
| |
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|||||||||||||| ||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||| |||| | ||||| |||| |||| |
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| T |
34730952 |
tgctgaaggttccacaatctggctgagttcgatgaaaagaaaagaagctgcagagaacaactttcacgtcacaatgcaaggcgacgtaagcatcagcctg |
34730853 |
T |
|
| Q |
611 |
aatctgtccaatcaagtcaatcagctttgtcttc |
644 |
Q |
| |
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|| | |||||||||||||||||| ||||||||| |
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| T |
34730852 |
aagcactccaatcaagtcaatcagttttgtcttc |
34730819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 421 - 499
Target Start/End: Complemental strand, 34726843 - 34726770
Alignment:
| Q |
421 |
agcacatcattaaaagttaatactactatactactcaatctgaataaacttgctgtcttttttggatggtgttgaataa |
499 |
Q |
| |
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|||||||||||||||||||||| || || |||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
34726843 |
agcacatcattaaaagttaatattaata-----ctcaatctgattcaacttgctgtcttttttggatggtgttgaataa |
34726770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 241 - 305
Target Start/End: Complemental strand, 34722229 - 34722165
Alignment:
| Q |
241 |
tctacatcaaggagttctaaatcagattcaaacagttcatcttcaattagggatattagcaaaac |
305 |
Q |
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|
||||||||| ||||||| ||||||||||||| ||||||||| ||| |||||||||||||||||| |
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| T |
34722229 |
tctacatcagggagttcgaaatcagattcaatcagttcatcaccaactagggatattagcaaaac |
34722165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 449 - 494
Target Start/End: Complemental strand, 34730996 - 34730951
Alignment:
| Q |
449 |
tactactcaatctgaataaacttgctgtcttttttggatggtgttg |
494 |
Q |
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||||||||| ||||| |||||||||||||||||||| ||||||||| |
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| T |
34730996 |
tactactcagtctgattaaacttgctgtcttttttgaatggtgttg |
34730951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 423 - 486
Target Start/End: Complemental strand, 34721713 - 34721655
Alignment:
| Q |
423 |
cacatcattaaaagttaatactactatactactcaatctgaataaacttgctgtcttttttgga |
486 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||| |
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| T |
34721713 |
cacatcattaaaagttaata-----ttactactcaatctgattcaacttgctgtcttttttgga |
34721655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 245 - 307
Target Start/End: Complemental strand, 34731519 - 34731457
Alignment:
| Q |
245 |
catcaaggagttctaaatcagattcaaacagttcatcttcaattagggatattagcaaaacat |
307 |
Q |
| |
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||||||||||||| ||||||| |||||| |||||||| | || |||| ||| ||||||||||| |
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| T |
34731519 |
catcaaggagttcaaaatcagcttcaaatagttcatcgttaaataggaataatagcaaaacat |
34731457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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