View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4263_high_20 (Length: 223)
Name: NF4263_high_20
Description: NF4263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4263_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 10 - 208
Target Start/End: Original strand, 33039607 - 33039805
Alignment:
| Q |
10 |
gattatactctcaactgagatagtattagaaattttaaattctgtgacatggttggtttttaatcaattaaatatattcttgccttataattatttacaa |
109 |
Q |
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| T |
33039607 |
gattacactctcaactgagatagtattagaaattttaaattctgtgacatggttggtttttaatcaattaaatatattcttgctttataattatttccaa |
33039706 |
T |
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| Q |
110 |
taaacattttggttagtgttgtttagttagagtccattaaagatactctcagttttgataagtattcatgatgataatgtctttttctattttctaatt |
208 |
Q |
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| T |
33039707 |
taaacattttagttagtgttgtttagttagagtccactaaagatactctcagttttgataagtattcatgatgataatgtctttttctattttctaatt |
33039805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 10 - 208
Target Start/End: Original strand, 39953389 - 39953598
Alignment:
| Q |
10 |
gattatactctcaactgagatagtattagaaattttaaattctgtgacatggttggttttta--atcaattaaatatattct----------tgccttat |
97 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||| |||| |
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| T |
39953389 |
gattacactctcaactgagatagtattagaaattttaaattctgtgactaaattggtttttataatcaattaaatatattctcatgcttccttgctttat |
39953488 |
T |
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| Q |
98 |
aattatttacaataaacattttggttagtgttgtttagttagagtccattaaagatactctcagttttgataagtattcatgatgataatgtctttttct |
197 |
Q |
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|||||||||| ||||||||||| ||||||||||||||||||||||||| | ||||||||| ||||||||| |||||||||||| ||||||||||||||| |
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| T |
39953489 |
aattatttaccataaacattttagttagtgttgtttagttagagtcca-cagagatactcttagttttgatgagtattcatgattataatgtctttttct |
39953587 |
T |
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| Q |
198 |
attttctaatt |
208 |
Q |
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|| |||||||| |
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| T |
39953588 |
atgttctaatt |
39953598 |
T |
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