View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4263_low_10 (Length: 374)
Name: NF4263_low_10
Description: NF4263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4263_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 5e-81; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 177 - 358
Target Start/End: Original strand, 31523748 - 31523925
Alignment:
| Q |
177 |
gaacctgtgaatgacattgagcaggaaattaaggttgtgatcaagtggctcatggcacatacaagtattgaagaccaaaattttacaccactgacactac |
276 |
Q |
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| T |
31523748 |
gaacctgtgaatgacattgagcaggaaataaaggttgcgatcaagtggctcatggcacatacaagtattgaagaccaaaattttacaccactgacactac |
31523847 |
T |
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| Q |
277 |
aatatttaacaccataattttatcaacagaggcataagtcataaccatgtgttacatatataggttcataatctaaacaaat |
358 |
Q |
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| T |
31523848 |
aatatttaacaccataattttatcaacagaggcataagtcataaccatgtgtttc----ataggttcataatctaaacaaat |
31523925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 25 - 169
Target Start/End: Original strand, 33441865 - 33442009
Alignment:
| Q |
25 |
actagcaggccatggtgaactcgaaggtggtgcttcaggtgtcgccaggtcaagtgatggtgatggagaaggtgaaggtactggagaccaaccatcttgt |
124 |
Q |
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| T |
33441865 |
actagcaggccatggtgcattcgaaggcggtgcttcaggtgtcaccaggtcaagtgatggtgatggagaaggtgaaggtactggagaccaaccatcttgt |
33441964 |
T |
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| Q |
125 |
tttggctgcacagttatgaaaagcttttgtccattttcgcagtga |
169 |
Q |
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| T |
33441965 |
tttggctgcacagttatgaaaagcttttgtccattttcgcagtga |
33442009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 25 - 169
Target Start/End: Original strand, 33452085 - 33452229
Alignment:
| Q |
25 |
actagcaggccatggtgaactcgaaggtggtgcttcaggtgtcgccaggtcaagtgatggtgatggagaaggtgaaggtactggagaccaaccatcttgt |
124 |
Q |
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| T |
33452085 |
actagcaggccatggtgcattcgaaggcggtgcttcaggtgtcaccaggtcaagtgatggtgatggagaaggtgaaggtactggagaccaaccatcttgt |
33452184 |
T |
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| Q |
125 |
tttggctgcacagttatgaaaagcttttgtccattttcgcagtga |
169 |
Q |
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| T |
33452185 |
tttggctgcacagttatgaaaagcttttgtccattttcgcagtga |
33452229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 235 - 313
Target Start/End: Original strand, 45652409 - 45652491
Alignment:
| Q |
235 |
atacaagtattgaagaccaaaattttacaccact----gacactacaatatttaacaccataattttatcaacagaggcataa |
313 |
Q |
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| T |
45652409 |
atacaagtattgaagaccacaattttacactactaccggccacaacaatatttaacaccataattttaccatcagaggcataa |
45652491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 105 - 169
Target Start/End: Original strand, 33399629 - 33399693
Alignment:
| Q |
105 |
ctggagaccaaccatcttgttttggctgcacagttatgaaaagcttttgtccattttcgcagtga |
169 |
Q |
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| T |
33399629 |
ctggataccaaccatcttgttttggtaaaacatttatgaaaagcttttgtccattttcgcagtga |
33399693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 153
Target Start/End: Original strand, 33395729 - 33395790
Alignment:
| Q |
92 |
gaaggtgaaggtactggagaccaaccatcttgttttggctgcacagttatgaaaagcttttg |
153 |
Q |
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| T |
33395729 |
gaaggtgagggtactggagaccaaccaaactgtggtggctgcacgtttatgaaaagcttttg |
33395790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 246
Target Start/End: Original strand, 41022759 - 41022829
Alignment:
| Q |
177 |
gaacctgtgaatgacattgagcaggaaattaa-ggttgtgatcaagtggctcatggcacatacaagtattg |
246 |
Q |
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| T |
41022759 |
gaacctgtgaatgatattgagtaggaaaccaaaggttgggatcaagtggctcatggcacatacaagtattg |
41022829 |
T |
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