View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4263_low_11 (Length: 372)
Name: NF4263_low_11
Description: NF4263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4263_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 123; Significance: 4e-63; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 230 - 364
Target Start/End: Complemental strand, 7378101 - 7377967
Alignment:
| Q |
230 |
tactttttatcaatttgtgtaaagaaacttcattttggtgggaaactcggtttccttagtgtgtaagagttaactgctgcaggttccattatatacataa |
329 |
Q |
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| T |
7378101 |
tactttttatcaatttgtgtagagaaacttcattttggtgggaaactcagtttccttagtgtgtaagagttaactgctgcaggttccattatatacataa |
7378002 |
T |
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| Q |
330 |
aggttttaggctttagatttttcttgtttcatctc |
364 |
Q |
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| T |
7378001 |
aggttttaggctttagatttttcttgttttatctc |
7377967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 21 - 190
Target Start/End: Complemental strand, 7378307 - 7378141
Alignment:
| Q |
21 |
tcaagttaagcaacgttcttactatttgtttacctgactaaatctaacttcattttttgttgcttttataattggcacgaaattacattttaacaacnnn |
120 |
Q |
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| T |
7378307 |
tcaagttaagcaacgttcttactatttgtttacctgactaaatctaacttcattttttgttgcttttataattggcacgaaattacattttaacaa---a |
7378211 |
T |
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| Q |
121 |
nnnnnnnnctgctggtgttaaccgtgaggtaagtataaccatcaaccatttaattagacattaaacattc |
190 |
Q |
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| T |
7378210 |
aaaaataattgttggtgttaaccgtgaggtaagtataactatcaaccatttaattagacattaaacattc |
7378141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 348
Target Start/End: Complemental strand, 7372253 - 7372212
Alignment:
| Q |
307 |
tgcaggttccattatatacataaaggttttaggctttagatt |
348 |
Q |
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| T |
7372253 |
tgcaggttccatgatagacataaaggtcttaggctttagatt |
7372212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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