View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4263_low_13 (Length: 319)
Name: NF4263_low_13
Description: NF4263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4263_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 156 - 301
Target Start/End: Original strand, 44999755 - 44999902
Alignment:
| Q |
156 |
tcactaatgtttcaacaaattacttgtttattttgatttagatgaaatgctccaacttgt--tggaaaggctccactgatcagaagcaatgtcttcagct |
253 |
Q |
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| T |
44999755 |
tcactaatgtttcaacaaattacttgtttattttgatttagatgaaatgctccaacttgtgttggaaaggctccactgatcagaagcaatgtcttcagct |
44999854 |
T |
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| Q |
254 |
gcagatgaaatgtcaccacattttgctacaatccttacactctctatc |
301 |
Q |
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| T |
44999855 |
gcagatgaaatgtcaccacattttgctacaatccttacactctctatc |
44999902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 44999610 - 44999699
Alignment:
| Q |
11 |
cacagaaattctacaatgttatatgaaaaagatctacattgaattttaaagaagaaacataatatgatacatacataattgcatacatat |
100 |
Q |
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| T |
44999610 |
cacagaaattctacaatgttatatgaaaaagatctacattgaattttaaagaagaaacattatatgatacatacataattgcatacatat |
44999699 |
T |
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