View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4263_low_16 (Length: 267)

Name: NF4263_low_16
Description: NF4263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4263_low_16
NF4263_low_16
[»] chr1 (10 HSPs)
chr1 (1-196)||(44999315-44999520)
chr1 (89-191)||(48527690-48527790)
chr1 (89-209)||(16964967-16965085)
chr1 (78-202)||(35943295-35943418)
chr1 (89-124)||(9482611-9482646)
chr1 (89-144)||(12665946-12666001)
chr1 (102-192)||(5612943-5613032)
chr1 (15-56)||(27814363-27814404)
chr1 (102-150)||(13894782-13894830)
chr1 (27-75)||(15072775-15072823)
[»] chr5 (14 HSPs)
chr5 (78-209)||(30859011-30859141)
chr5 (80-194)||(1102765-1102877)
chr5 (114-209)||(36898819-36898916)
chr5 (89-209)||(22047890-22048010)
chr5 (89-209)||(22308640-22308759)
chr5 (78-209)||(30910888-30911017)
chr5 (78-150)||(11262538-11262610)
chr5 (83-209)||(4127089-4127219)
chr5 (90-209)||(9220300-9220416)
chr5 (1-74)||(33173946-33174019)
chr5 (89-209)||(13520640-13520759)
chr5 (13-74)||(22049123-22049183)
chr5 (13-73)||(22047801-22047860)
chr5 (128-208)||(33172743-33172823)
[»] chr3 (17 HSPs)
chr3 (78-209)||(35371053-35371183)
chr3 (89-209)||(26886429-26886547)
chr3 (89-209)||(41264494-41264612)
chr3 (2-173)||(42684934-42685115)
chr3 (78-143)||(14745106-14745171)
chr3 (78-209)||(3208630-3208759)
chr3 (164-209)||(27841549-27841594)
chr3 (89-209)||(34819126-34819244)
chr3 (102-170)||(20314644-20314711)
chr3 (102-209)||(46368977-46369081)
chr3 (89-143)||(48083383-48083437)
chr3 (24-73)||(50810821-50810870)
chr3 (24-73)||(50864994-50865043)
chr3 (102-203)||(53624210-53624309)
chr3 (1-69)||(35372150-35372217)
chr3 (102-190)||(37415164-37415252)
chr3 (1-73)||(53612928-53612999)
[»] chr8 (12 HSPs)
chr8 (81-209)||(32695116-32695241)
chr8 (80-209)||(17455194-17455321)
chr8 (89-199)||(20180525-20180634)
chr8 (78-209)||(24192504-24192634)
chr8 (93-193)||(6397942-6398041)
chr8 (1-73)||(42100094-42100165)
chr8 (89-144)||(32798436-32798491)
chr8 (78-193)||(42870960-42871074)
chr8 (89-194)||(31845652-31845755)
chr8 (89-150)||(9854778-9854839)
chr8 (102-143)||(44076267-44076308)
chr8 (121-208)||(8571457-8571544)
[»] chr7 (14 HSPs)
chr7 (78-209)||(32255136-32255264)
chr7 (89-199)||(44372885-44372994)
chr7 (89-199)||(44381741-44381850)
chr7 (102-209)||(22537729-22537832)
chr7 (89-209)||(13564080-13564198)
chr7 (102-194)||(48312209-48312300)
chr7 (78-143)||(35295844-35295909)
chr7 (89-144)||(43460727-43460782)
chr7 (102-193)||(16756040-16756128)
chr7 (1-73)||(3413589-3413661)
chr7 (89-194)||(43441502-43441605)
chr7 (102-193)||(47059278-47059371)
chr7 (102-192)||(47060334-47060423)
chr7 (164-209)||(46835906-46835951)
[»] chr4 (18 HSPs)
chr4 (89-209)||(44498617-44498736)
chr4 (78-209)||(2312323-2312451)
chr4 (80-209)||(7707737-7707864)
chr4 (89-193)||(56085503-56085605)
chr4 (89-194)||(36845566-36845669)
chr4 (102-194)||(38555134-38555226)
chr4 (78-172)||(1794558-1794651)
chr4 (1-74)||(50546963-50547036)
chr4 (102-194)||(1519979-1520070)
chr4 (78-150)||(13165640-13165712)
chr4 (78-170)||(27850816-27850908)
chr4 (102-209)||(19750135-19750241)
chr4 (102-209)||(19789565-19789671)
chr4 (89-194)||(26629946-26630049)
chr4 (77-134)||(11968656-11968713)
chr4 (89-194)||(52138648-52138753)
chr4 (1-73)||(7708776-7708847)
chr4 (161-209)||(23202075-23202123)
[»] chr2 (9 HSPs)
chr2 (1-77)||(12359662-12359738)
chr2 (78-209)||(18616846-18616975)
chr2 (78-209)||(29219532-29219660)
chr2 (78-209)||(29332831-29332959)
chr2 (89-208)||(34467662-34467782)
chr2 (136-203)||(7436668-7436735)
chr2 (89-151)||(42641758-42641820)
chr2 (89-190)||(8320913-8321013)
chr2 (89-141)||(32469306-32469358)
[»] chr6 (8 HSPs)
chr6 (89-208)||(29381572-29381689)
chr6 (89-209)||(18346592-18346709)
chr6 (89-208)||(17837773-17837890)
chr6 (93-193)||(23392375-23392475)
chr6 (24-73)||(232254-232303)
chr6 (94-151)||(7312182-7312238)
chr6 (89-141)||(7311632-7311684)
chr6 (102-194)||(11722955-11723046)
[»] scaffold2071 (1 HSPs)
scaffold2071 (77-172)||(559-653)
[»] scaffold0118 (1 HSPs)
scaffold0118 (78-209)||(43416-43544)
[»] scaffold0077 (1 HSPs)
scaffold0077 (78-209)||(54025-54154)
[»] scaffold0031 (1 HSPs)
scaffold0031 (77-172)||(125108-125203)


Alignment Details
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 44999520 - 44999315
Alignment:
Q  1 taataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatccctagctgttaactttaacctta-----------tggaccaatcgt 89  Q
    |||||||| |||||||||  || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||           ||||||||||||    
T  44999520 taataaaattggcgttttcgtc-ctcattttttcctctgtttgccaaataaatccctagctgttaactttaaccttaaatgtctatggtggaccaatcgt 44999422  T
Q  90 aagagtggttctccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatatc 189  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  44999421 aagagtggttcaccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacgcaagtctattatatc 44999322  T
Q  190 ttacgat 196  Q
    |||||||    
T  44999321 ttacgat 44999315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 89 - 191
Target Start/End: Original strand, 48527690 - 48527790
Alignment:
Q  89 taagagtggttctccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatat 188  Q
    |||||||||| | ||||||||||||| ||||||||||| ||||||  ||||||||  |||||| ||| ||||||||||||||||  ||||| |||| |||    
T  48527690 taagagtggtccaccatagatcttatcaattattttaatttaaactgtttgatct--tttttttaaatgatgaccattggattatgcaagtgtattttat 48527787  T
Q  189 ctt 191  Q
    |||    
T  48527788 ctt 48527790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 16965085 - 16964967
Alignment:
Q  89 taagagtggttctccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatat 188  Q
    |||||||||| | ||||||||| ||||||||||||||| || |||| |||| | ||  ||||  ||||||  ||||||| ||||| || ||||||| |||    
T  16965085 taagagtggtccaccatagatcctattaattattttaatttcaaccgtttgttttttctttt--aaaagagaaccattgtattacgcaggtctattttat 16964988  T
Q  189 cttacgatgtaccaccaacac 209  Q
     ||||||||||||||||||||    
T  16964987 attacgatgtaccaccaacac 16964967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 202
Target Start/End: Complemental strand, 35943418 - 35943295
Alignment:
Q  78 tggaccaatcgtaagagtggttctccatagatcttattaattattttaacttaaa-ccatttgatcttgttttttcaaaagatgaccattggattacaca 176  Q
    |||||||| | |||||||| | | ||||||| |||||||| | |||||  ||||| || |||||||||  ||||| ||| ||||||||||| ||||| ||    
T  35943418 tggaccaaccttaagagtgatccaccatagaccttattaaattttttattttaaaaccgtttgatctt--tttttgaaaggatgaccattgaattacgca 35943321  T
Q  177 agtctattatatcttacgatgtacca 202  Q
     ||||||| |||||||||||| ||||    
T  35943320 ggtctattttatcttacgatgaacca 35943295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 89 - 124
Target Start/End: Original strand, 9482611 - 9482646
Alignment:
Q  89 taagagtggttctccatagatcttattaattatttt 124  Q
    |||||||||||| |||||||||||||||||||||||    
T  9482611 taagagtggttcaccatagatcttattaattatttt 9482646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 89 - 144
Target Start/End: Original strand, 12665946 - 12666001
Alignment:
Q  89 taagagtggttctccatagatcttattaattattttaacttaaaccatttgatctt 144  Q
    |||||||||| | |||||||||||||||||| | |||| ||||||| |||||||||    
T  12665946 taagagtggtccaccatagatcttattaattttgttaatttaaaccgtttgatctt 12666001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 192
Target Start/End: Complemental strand, 5613032 - 5612943
Alignment:
Q  102 ccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatatctta 192  Q
    ||||||||| ||||||||||||||| ||||||| |||||| |   ||||| ||| |||||||||| ||||||  |||| |||| |||||||    
T  5613032 ccatagatcctattaattattttaatttaaaccgtttgat-tatatttttaaaaggatgaccattagattacgtaagtgtattttatctta 5612943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 27814363 - 27814404
Alignment:
Q  15 ttttgatcgctcattttttcctatgtttgccaaataaatccc 56  Q
    ||||| || ||||||||||||| |||||||||||||||||||    
T  27814363 ttttggtccctcattttttcctctgtttgccaaataaatccc 27814404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 150
Target Start/End: Original strand, 13894782 - 13894830
Alignment:
Q  102 ccatagatcttattaattattttaacttaaaccatttgatcttgttttt 150  Q
    ||||||||| | ||||||||||||| ||||||| ||||||||| |||||    
T  13894782 ccatagatcctgttaattattttaatttaaaccgtttgatctttttttt 13894830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 15072823 - 15072775
Alignment:
Q  27 attttttcctatgtttgccaaataaatccctagctgttaactttaacct 75  Q
    ||||||||||  ||||||||||||||||| |  ||||||||||||||||    
T  15072823 attttttcctccgtttgccaaataaatccatgtctgttaactttaacct 15072775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 78 - 209
Target Start/End: Complemental strand, 30859141 - 30859011
Alignment:
Q  78 tggaccaatcgtaagagtggttctccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaa 177  Q
    |||||||||| |||||||||| | ||||||||| ||||||||||||||| ||||||| |||||| ||  ||||| ||||||  |||||||||||| ||||    
T  30859141 tggaccaatcttaagagtggtccaccatagatcctattaattattttaatttaaaccgtttgat-tttctttttaaaaagagaaccattggattagacaa 30859043  T
Q  178 gtctattatatcttacgatgtaccaccaacac 209  Q
    ||||||| |||||||| || ||||||||||||    
T  30859042 gtctattttatcttacaatataccaccaacac 30859011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 80 - 194
Target Start/End: Original strand, 1102765 - 1102877
Alignment:
Q  80 gaccaatcgtaagagtggttctccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaagt 179  Q
    |||||| | |||||||||| | ||||||||||||||||||||||||| ||||||| ||||||||  |||||| ||| |||||||| |||||||  |||||    
T  1102765 gaccaaccttaagagtggtccaccatagatcttattaattattttaatttaaaccgtttgatct--tttttttaaatgatgaccagtggattatgcaagt 1102862  T
Q  180 ctattatatcttacg 194  Q
     |||| |||||||||    
T  1102863 gtattttatcttacg 1102877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 114 - 209
Target Start/End: Complemental strand, 36898916 - 36898819
Alignment:
Q  114 ttaattattttaacttaaaccatttgatcttgtttt-ttc-aaaagatgaccattggattacacaagtctattatatcttacgatgtaccaccaacac 209  Q
    ||||||||||||  ||||||| |||||| || |||| ||| ||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||    
T  36898916 ttaattattttagtttaaaccctttgatttttttttcttctaaaagatgaccattggattacgcatgtctattttatcttacgatgtaccaccaacac 36898819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 209
Target Start/End: Original strand, 22047890 - 22048010
Alignment:
Q  89 taagagtggttctccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatat 188  Q
    |||||||||| | ||||| ||| ||| ||||||||||| ||||||| |||||| || |||||| ||||||  ||||||| |||| | | ||||||| |||    
T  22047890 taagagtggtccaccataaatcctatgaattattttaatttaaaccgtttgatttttttttttgaaaagagaaccattgaattagaaaggtctattttat 22047989  T
Q  189 cttacgatgtaccaccaacac 209  Q
    ||||| |||||||| ||||||    
T  22047990 cttacaatgtaccatcaacac 22048010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 22308759 - 22308640
Alignment:
Q  89 taagagtggttctccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatat 188  Q
    |||||||||| | |||||||  ||||||| | ||||||  ||||||||||||||| ||||||| ||||||||||||||||||||  || ||||||| |      
T  22308759 taagagtggtccaccatagacattattaaattttttaatgtaaaccatttgatct-gttttttaaaaagatgaccattggattatgcatgtctattgtta 22308661  T
Q  189 cttacgatgtaccaccaacac 209  Q
    |||||| ||||||| ||||||    
T  22308660 cttacggtgtaccaacaacac 22308640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 78 - 209
Target Start/End: Original strand, 30910888 - 30911017
Alignment:
Q  78 tggaccaatcgtaagagtggttctccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaa 177  Q
    |||||||| | |||||||||| | ||||||||| ||||||||||||||| || |||| |||||   | ||| || ||||||  ||||||| ||||  ||     
T  30910888 tggaccaaccttaagagtggtccaccatagatcctattaattattttaatttcaaccgtttga--gtttttctttaaaagagaaccattgaattaggcat 30910985  T
Q  178 gtctattatatcttacgatgtaccaccaacac 209  Q
    ||||||| ||||||||||||||||||||||||    
T  30910986 gtctattttatcttacgatgtaccaccaacac 30911017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 150
Target Start/End: Original strand, 11262538 - 11262610
Alignment:
Q  78 tggaccaatcgtaagagtggttctccatagatcttattaattattttaacttaaaccatttgatcttgttttt 150  Q
    |||||||| | |||||||||| | ||||||||| ||||||||||| ||| ||||||||||||||||| |||||    
T  11262538 tggaccaaccttaagagtggtccaccatagatcctattaattattataatttaaaccatttgatctttttttt 11262610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 209
Target Start/End: Complemental strand, 4127219 - 4127089
Alignment:
Q  83 caatcgtaagagtggttctccatagatcttattaattattttaacttaaaccatttgatcttgttttttc----aaaagatgaccattggattacacaag 178  Q
    ||||| ||| |||||| | ||||||||| | ||||||| ||||| |||||||||||||| ||  |||||     ||||||  |||||| |||| |||| |    
T  4127219 caatcttaaaagtggtccaccatagatcctgttaattaatttaatttaaaccatttgatttttattttttttgtaaaagagaaccattagattgcacagg 4127120  T
Q  179 tctattatatcttacgatgtaccaccaacac 209  Q
    |||||| ||||||| ||||||||||||||||    
T  4127119 tctattttatcttatgatgtaccaccaacac 4127089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 209
Target Start/End: Complemental strand, 9220416 - 9220300
Alignment:
Q  90 aagagtggttctccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatatc 189  Q
    ||||||||| | ||||| ||||||||||||||||||| ||||||| |||||   | |||  | |||||| |||| |||||||||||| ||||||| || |    
T  9220416 aagagtggtcccccataaatcttattaattattttaatttaaaccgtttga---tttttccttaaaagacgaccgttggattacacatgtctattttacc 9220320  T
Q  190 ttacgatgtaccaccaacac 209  Q
     |||||||||  ||||||||    
T  9220319 atacgatgtattaccaacac 9220300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 33174019 - 33173946
Alignment:
Q  1 taataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatccctagctgttaactttaacc 74  Q
    |||||||| |||||||||  || ||||  ||||||| |||||||||||||||||| | |||||||| |||||||    
T  33174019 taataaaaatggcgttttagtccctcaccttttcctctgtttgccaaataaatccttggctgttaagtttaacc 33173946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 13520759 - 13520640
Alignment:
Q  89 taagagtggttctccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatat 188  Q
    |||||||||||| ||||||||| ||||||||| ||| | ||||||  || ||| || |||| | ||||||  ||| |||||||||  | ||||||| |||    
T  13520759 taagagtggttcaccatagatcctattaattaatttgatttaaactgttggat-tttttttataaaaagagaaccgttggattacgaaggtctattttat 13520661  T
Q  189 cttacgatgtaccaccaacac 209  Q
    |||| |||||| |||||||||    
T  13520660 cttatgatgtatcaccaacac 13520640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 22049183 - 22049123
Alignment:
Q  13 cgttttgatcgctcattttttcctatgtttgccaaataaatccctagctgttaactttaacc 74  Q
    ||||||| || |||| |||||||| |||||| ||||||||||||| |||||||| |||||||    
T  22049183 cgttttggtccctcactttttcctctgtttggcaaataaatccct-gctgttaagtttaacc 22049123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 22047801 - 22047860
Alignment:
Q  13 cgttttgatcgctcattttttcctatgtttgccaaataaatccctagctgttaactttaac 73  Q
    ||||||| || |||||||||||||  ||||||||||||||| ||| |||||||| ||||||    
T  22047801 cgttttggtccctcattttttcctccgtttgccaaataaat-cctggctgttaagtttaac 22047860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 208
Target Start/End: Original strand, 33172743 - 33172823
Alignment:
Q  128 ttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatatcttacgatgtaccaccaaca 208  Q
    ||||||| ||||||||  |||||| |||||||||||||| |||||  |  ||||||| || |||||| ||||||| |||||    
T  33172743 ttaaaccgtttgatctattttttttaaaagatgaccattagattatgcgtgtctattttaacttacggtgtaccaacaaca 33172823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 78 - 209
Target Start/End: Original strand, 35371053 - 35371183
Alignment:
Q  78 tggaccaatcgtaagagtggttctccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaa 177  Q
    |||||||| | |||||||||| | ||||||||| ||||||||||||||| || |||  |||||| || |||||| ||||||  ||||||||||||  |||    
T  35371053 tggaccaaccttaagagtggtccaccatagatcctattaattattttaattttaactttttgatttt-ttttttaaaaagagaaccattggattaggcaa 35371151  T
Q  178 gtctattatatcttacgatgtaccaccaacac 209  Q
    ||||||| ||||||||||||||||||||||||    
T  35371152 gtctattttatcttacgatgtaccaccaacac 35371183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 89 - 209
Target Start/End: Original strand, 26886429 - 26886547
Alignment:
Q  89 taagagtggttctccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatat 188  Q
    |||||||||| | ||||| ||| ||||||||||||||| ||||||| |||||| || |||||  |||||   ||||||||||||  || ||||||| |||    
T  26886429 taagagtggtccaccataaatcctattaattattttaatttaaaccgtttgatttttttttt--aaaagggaaccattggattatgcatgtctattttat 26886526  T
Q  189 cttacgatgtaccaccaacac 209  Q
    |||||||||||||||||||||    
T  26886527 cttacgatgtaccaccaacac 26886547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 41264612 - 41264494
Alignment:
Q  89 taagagtggttctccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatat 188  Q
    |||||||||| | ||||||||| ||||||||||||||| ||  ||| |||||| ||  ||||| ||||||  ||||||| ||||  || ||||||| |||    
T  41264612 taagagtggtacaccatagatcctattaattattttaatttcgaccgtttgatttt--tttttaaaaagagaaccattgaattaagcaggtctattttat 41264515  T
Q  189 cttacgatgtaccaccaacac 209  Q
    |||||||||||||||||||||    
T  41264514 cttacgatgtaccaccaacac 41264494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 173
Target Start/End: Original strand, 42684934 - 42685115
Alignment:
Q  2 aataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatccctagctgttaactttaacct--------tatgg---accaatcgta 90  Q
    |||||||||| ||||||  || |||||||||| |||||||| |||||||||||| |  ||||||| |||||||         |||||   ||||| | ||    
T  42684934 aataaaactgacgttttagtccctcatttttttctatgtttaccaaataaatccttgactgttaagtttaaccccaaatgtctatggtgaaccaagctta 42685033  T
Q  91 agagtggttctccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattac 173  Q
    |||||||| | ||||| | |||||||| | |||||| ||||||| |||||||| ||||||| ||||||||||||||| |||||    
T  42685034 agagtggtccaccataaaccttattaaattttttaatttaaaccgtttgatct-gttttttaaaaagatgaccattgaattac 42685115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 143
Target Start/End: Complemental strand, 14745171 - 14745106
Alignment:
Q  78 tggaccaatcgtaagagtggttctccatagatcttattaattattttaacttaaaccatttgatct 143  Q
    |||||||| | |||||||||||| ||||||||| ||||||||||||||| ||||||  ||||||||    
T  14745171 tggaccaaccttaagagtggttcaccatagatcctattaattattttaatttaaactgtttgatct 14745106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 209
Target Start/End: Original strand, 3208630 - 3208759
Alignment:
Q  78 tggaccaatcgtaagagtggttctccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaa 177  Q
    |||||||| | |||||||||| | ||||| ||| ||||||||||| ||| ||||||| |||||| || |||||  |||| |  |||||||||| |  |||    
T  3208630 tggaccaaccttaagagtggtccaccataaatcctattaattattataatttaaaccgtttgattttattttta-aaaatagaaccattggat-aggcaa 3208727  T
Q  178 gtctattatatcttacgatgtaccaccaacac 209  Q
    ||||| | ||||||||||||||||| ||||||    
T  3208728 gtctaatttatcttacgatgtaccatcaacac 3208759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 27841594 - 27841549
Alignment:
Q  164 attggattacacaagtctattatatcttacgatgtaccaccaacac 209  Q
    |||||||||  |||||||||| ||||||||||||||||||||||||    
T  27841594 attggattaggcaagtctattttatcttacgatgtaccaccaacac 27841549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 34819244 - 34819126
Alignment:
Q  89 taagagtggttctccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatat 188  Q
    |||||||||| | ||||||||| ||||| ||||||||| ||||||  |||| | || || |   ||||||  ||||||||||||  |||||||||| |||    
T  34819244 taagagtggtccaccatagatcctattacttattttaatttaaactgtttgttttttttataaaaaaaga--accattggattaggcaagtctattttat 34819147  T
Q  189 cttacgatgtaccaccaacac 209  Q
    |||| | ||||||||||||||    
T  34819146 cttatggtgtaccaccaacac 34819126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 170
Target Start/End: Complemental strand, 20314711 - 20314644
Alignment:
Q  102 ccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggat 170  Q
    ||||||| ||||||||||  ||||| |||||||||||||| || ||||||||||||| |||| ||||||    
T  20314711 ccatagaccttattaatttatttaatttaaaccatttgat-ttattttttcaaaagaggaccgttggat 20314644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 209
Target Start/End: Original strand, 46368977 - 46369081
Alignment:
Q  102 ccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatatcttacgatgtacc 201  Q
    ||||| ||| ||||||||||||||| ||||| ||||| ||  | |||||| || |||  |||||| ||||||| |  |||||| ||||||||||||||||    
T  46368977 ccatatatcatattaattattttaatttaaatcattttat--tatttttt-aagagagaaccattagattacaaatatctattttatcttacgatgtacc 46369073  T
Q  202 accaacac 209  Q
    ||||||||    
T  46369074 accaacac 46369081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 143
Target Start/End: Original strand, 48083383 - 48083437
Alignment:
Q  89 taagagtggttctccatagatcttattaattattttaacttaaaccatttgatct 143  Q
    ||||||||||   ||||||||| ||||||||||||||| |||||||||| |||||    
T  48083383 taagagtggtctaccatagatcctattaattattttaatttaaaccattcgatct 48083437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 50810870 - 50810821
Alignment:
Q  24 ctcattttttcctatgtttgccaaataaatccctagctgttaactttaac 73  Q
    |||||||||||||  |||||||||||||||| | | ||||||||||||||    
T  50810870 ctcattttttcctccgtttgccaaataaatctcaaactgttaactttaac 50810821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 50864994 - 50865043
Alignment:
Q  24 ctcattttttcctatgtttgccaaataaatccctagctgttaactttaac 73  Q
    |||||||||||||  |||||||||||||||| | | ||||||||||||||    
T  50864994 ctcattttttcctccgtttgccaaataaatctcaaactgttaactttaac 50865043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 203
Target Start/End: Complemental strand, 53624309 - 53624210
Alignment:
Q  102 ccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatatcttacgatgtacc 201  Q
    ||||||| |||||||||| ||| || || |||| ||||||||| |||||   |||||  ||| |||||||||||  ||||||| ||||||||||||||||    
T  53624309 ccatagaccttattaatt-tttcaattttaaccttttgatctt-tttttaagaaagagaaccgttggattacacgtgtctattttatcttacgatgtacc 53624212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 35372217 - 35372150
Alignment:
Q  1 taataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatccctagctgttaactt 69  Q
    |||||||| |||||||||  || ||||  ||||||| |||||||||||||||||| || ||||||||||    
T  35372217 taataaaaatggcgttttagtccctcaccttttcctctgtttgccaaataaatcctta-ctgttaactt 35372150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 190
Target Start/End: Original strand, 37415164 - 37415252
Alignment:
Q  102 ccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatatct 190  Q
    |||||||||||||||||| |||||| || |||| ||  ||  | |||||| |||||| |||||||| |||||||| || |||| |||||    
T  37415164 ccatagatcttattaattcttttaattttaaccgttaaattgtttttttttaaaagaggaccattgaattacacatgtttattttatct 37415252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 53612928 - 53612999
Alignment:
Q  1 taataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatccctagctgttaactttaac 73  Q
    |||||||| |||||||||  || ||||  ||||||| ||||||||||||||||||| | | ||||||||||||    
T  53612928 taataaaaatggcgttttattccctcacattttcctctgtttgccaaataaatcccga-ccgttaactttaac 53612999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 81 - 209
Target Start/End: Complemental strand, 32695241 - 32695116
Alignment:
Q  81 accaatcgtaagagtggttctccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaagtc 180  Q
    ||||||| ||||| |||| | ||||||||| ||||||||||||||| ||||||| |||||| || ||||   ||||||  |||||||||||| |||||||    
T  32695241 accaatcttaagattggtccaccatagatcctattaattattttaatttaaaccgtttgattttttttt---aaaagagaaccattggattagacaagtc 32695145  T
Q  181 tattatatcttacgatgtaccaccaacac 209  Q
    |||| ||||||||||| ||||||||||||    
T  32695144 tattttatcttacgatataccaccaacac 32695116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 80 - 209
Target Start/End: Original strand, 17455194 - 17455321
Alignment:
Q  80 gaccaatcgtaagagtggttctccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaagt 179  Q
    |||||||| ||| |||||| | ||||||||||||||||||||||||| || |||| ||| ||||  |||||  |||||| ||||||| |||||| || ||    
T  17455194 gaccaatcttaaaagtggtccaccatagatcttattaattattttaatttgaaccgttttatctatttttt--aaaagaggaccattagattacgcaggt 17455291  T
Q  180 ctattatatcttacgatgtaccaccaacac 209  Q
    ||||| |||||||||||||||||| |||||    
T  17455292 ctattttatcttacgatgtaccactaacac 17455321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 89 - 199
Target Start/End: Complemental strand, 20180634 - 20180525
Alignment:
Q  89 taagagtggttctccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatat 188  Q
    |||||||||| | ||||||||| ||||||||||||||| | ||||| ||||||||| |||| | |||||| ||||||| ||||||||| ||||||| |||    
T  20180634 taagagtggtccaccatagatcctattaattattttaattaaaaccgtttgatctt-ttttcttaaaagaggaccattagattacacatgtctattttat 20180536  T
Q  189 cttacgatgta 199  Q
    |||| ||||||    
T  20180535 cttaggatgta 20180525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 78 - 209
Target Start/End: Complemental strand, 24192634 - 24192504
Alignment:
Q  78 tggaccaatcgtaagagtggttctccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaa 177  Q
    |||||||| | |||||||||| | ||||||||| ||||||||||||||| | ||||| |||||| || |||| | ||||||  |||||| |||||| ||     
T  24192634 tggaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaaccgtttgat-tttttttcttaaaagagaaccattagattacgcat 24192536  T
Q  178 gtctattatatcttacgatgtaccaccaacac 209  Q
    ||||||| ||| ||| |||||| |||||||||    
T  24192535 gtctattttattttaggatgtatcaccaacac 24192504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 193
Target Start/End: Original strand, 6397942 - 6398041
Alignment:
Q  93 agtggttctccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatatctta 192  Q
    |||||| | ||||||| |||||||||| |||||| ||||||||||||||| |||||||  ||| ||||| |||| |||||||||| | |||| |||||||    
T  6397942 agtggtccaccatagaccttattaatttttttaatttaaaccatttgatc-tgtttttaaaaaggatgatcatttgattacacaaatgtattttatctta 6398040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 42100165 - 42100094
Alignment:
Q  1 taataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatccctagctgttaactttaac 73  Q
    |||||||| ||||||||||||| ||||| |||||||  ||||||||||||| |||| | ||||||||||||||    
T  42100165 taataaaaatggcgttttgatccctcatattttcctccgtttgccaaataattcccga-ctgttaactttaac 42100094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 144
Target Start/End: Complemental strand, 32798491 - 32798436
Alignment:
Q  89 taagagtggttctccatagatcttattaattattttaacttaaaccatttgatctt 144  Q
    |||||||||| | ||||||||| ||||||||||||||| ||||||| |||||||||    
T  32798491 taagagtggtccaccatagatcctattaattattttaatttaaaccgtttgatctt 32798436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 193
Target Start/End: Original strand, 42870960 - 42871074
Alignment:
Q  78 tggaccaatcgtaagagtggttctccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaa 177  Q
    |||||||||| |||||||||| | || |||| |||||||| | || ||| ||||||| |||||||| || |||| ||| ||||||||||| ||||| ||     
T  42870960 tggaccaatcttaagagtggtccaccgtagaccttattaaattttgtaatttaaaccgtttgatct-gtgttttaaaaggatgaccattgaattacgcat 42871058  T
Q  178 gtctattatatcttac 193  Q
    || |||| ||||||||    
T  42871059 gtgtattttatcttac 42871074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 194
Target Start/End: Complemental strand, 31845755 - 31845652
Alignment:
Q  89 taagagtggttctccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatat 188  Q
    |||||||||| | |||||| || |||||||||||||||  |||||  ||||||||  |||||| ||| |||||||||| ||||||  | || |||| |||    
T  31845755 taagagtggtccaccataggtcctattaattattttaatgtaaactgtttgatct--tttttttaaaggatgaccattagattacgtaggtgtattttat 31845658  T
Q  189 cttacg 194  Q
    ||||||    
T  31845657 cttacg 31845652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 89 - 150
Target Start/End: Complemental strand, 9854839 - 9854778
Alignment:
Q  89 taagagtggttctccatagatcttattaattattttaacttaaaccatttgatcttgttttt 150  Q
    |||||||||| | ||||||||| |||||||| || ||| |||||||||||||| || |||||    
T  9854839 taagagtggtccaccatagatcctattaattcttctaatttaaaccatttgatttttttttt 9854778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 143
Target Start/End: Complemental strand, 44076308 - 44076267
Alignment:
Q  102 ccatagatcttattaattattttaacttaaaccatttgatct 143  Q
    ||||| |||||||||||| |||||| ||||||||||||||||    
T  44076308 ccataaatcttattaatttttttaatttaaaccatttgatct 44076267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 208
Target Start/End: Complemental strand, 8571544 - 8571457
Alignment:
Q  121 ttttaacttaaaccatttgatcttgttttttcaaaaga-tgaccattggattacacaagtctattatatcttacgatgtaccaccaaca 208  Q
    |||||| ||||||  |||||||| |||| || |||||| |||||||||||||| ||  ||||||| || |||||||||||||| |||||    
T  8571544 ttttaatttaaactgtttgatct-gtttcttaaaaagaatgaccattggattatacgtgtctattgtaacttacgatgtaccaacaaca 8571457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 78 - 209
Target Start/End: Original strand, 32255136 - 32255264
Alignment:
Q  78 tggaccaatcgtaagagtggttctccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaa 177  Q
    |||||||| | |||||||||| | ||||||||| ||||||||||||||| || |||| |||||| || || |   ||||||| |||||||||||| |||     
T  32255136 tggaccaaccttaagagtggtccaccatagatcctattaattattttaatttcaaccgtttgatttttttgt---aaaagataaccattggattagacag 32255232  T
Q  178 gtctattatatcttacgatgtaccaccaacac 209  Q
    |||||||  |||||||||||||||||||||||    
T  32255233 gtctatttaatcttacgatgtaccaccaacac 32255264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 89 - 199
Target Start/End: Original strand, 44372885 - 44372994
Alignment:
Q  89 taagagtggttctccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatat 188  Q
    |||||||||| | ||||||||| ||||||||||||||| | ||||| ||||||||| |||| | |||||| ||||||| ||||||||| ||||||| |||    
T  44372885 taagagtggtccaccatagatcctattaattattttaattaaaaccgtttgatctt-ttttcttaaaagaggaccattagattacacatgtctattttat 44372983  T
Q  189 cttacgatgta 199  Q
    |||| ||||||    
T  44372984 cttaggatgta 44372994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 89 - 199
Target Start/End: Original strand, 44381741 - 44381850
Alignment:
Q  89 taagagtggttctccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatat 188  Q
    |||||||||| | ||||||||| ||||||||||||||| | ||||| ||||||||| |||| | |||||| ||||||| ||||||||| ||||||| |||    
T  44381741 taagagtggtccaccatagatcctattaattattttaattaaaaccgtttgatctt-ttttcttaaaagaggaccattagattacacatgtctattttat 44381839  T
Q  189 cttacgatgta 199  Q
    |||| ||||||    
T  44381840 cttaggatgta 44381850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 209
Target Start/End: Original strand, 22537729 - 22537832
Alignment:
Q  102 ccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatatcttacgatgtacc 201  Q
    ||||||||| ||||||||||||||| ||||||| ||||||    |||||| |||||   ||||||||||||  || ||||||| |||||||||||| |||    
T  22537729 ccatagatcctattaattattttaatttaaaccgtttgat----tttttttaaaagggaaccattggattatgcaggtctattttatcttacgatgaacc 22537824  T
Q  202 accaacac 209  Q
    ||||||||    
T  22537825 accaacac 22537832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 13564198 - 13564080
Alignment:
Q  89 taagagtggttctccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatat 188  Q
    |||||||||| | ||||||||| ||||||||||||||| || |||| || |||  | |||||| ||||||  |||||||||||| ||| ||||||| ||     
T  13564198 taagagtggtccaccatagatcctattaattattttaatttgaaccgttagat--tattttttaaaaagagaaccattggattagacatgtctattttag 13564101  T
Q  189 cttacgatgtaccaccaacac 209  Q
    |||| ||||||| ||||||||    
T  13564100 cttatgatgtactaccaacac 13564080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 194
Target Start/End: Original strand, 48312209 - 48312300
Alignment:
Q  102 ccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatatcttacg 194  Q
    ||||||||| |||||||| |||||| |||||   ||||||||| |||||| ||| ||||||||||||||||| || ||||||| |||||||||    
T  48312209 ccatagatcctattaatt-ttttaatttaaatggtttgatctttttttttaaaaggatgaccattggattacgcaggtctattttatcttacg 48312300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 143
Target Start/End: Original strand, 35295844 - 35295909
Alignment:
Q  78 tggaccaatcgtaagagtggttctccatagatcttattaattattttaacttaaaccatttgatct 143  Q
    |||||||| | |||||||||| | ||||||||| ||||||||||||||| ||||||| ||||||||    
T  35295844 tggaccaaccttaagagtggtccaccatagatcctattaattattttaatttaaaccgtttgatct 35295909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 144
Target Start/End: Complemental strand, 43460782 - 43460727
Alignment:
Q  89 taagagtggttctccatagatcttattaattattttaacttaaaccatttgatctt 144  Q
    |||||||||| | ||||||||| ||||||||||||||| ||||||| |||||||||    
T  43460782 taagagtggtccaccatagatcctattaattattttaatttaaaccctttgatctt 43460727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 193
Target Start/End: Original strand, 16756040 - 16756128
Alignment:
Q  102 ccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatatcttac 193  Q
    ||||||||| ||||||||||||||| || ||||||||||   | |||||| ||| || ||||||| |||||| ||||| |||| ||||||||    
T  16756040 ccatagatcctattaattattttaattttaaccatttga---ttttttttaaaaggaggaccattagattacgcaagtgtattttatcttac 16756128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 3413589 - 3413661
Alignment:
Q  1 taataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatccctagctgttaactttaac 73  Q
    |||||||| |||||||||  || ||||  |||| || ||||||||||||||||||||| ||||||| ||||||    
T  3413589 taataaaaatggcgttttagtccctcaccttttactctgtttgccaaataaatccctaactgttaagtttaac 3413661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 194
Target Start/End: Original strand, 43441502 - 43441605
Alignment:
Q  89 taagagtggttctccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatat 188  Q
    |||||||||| | |||||  || |||||||||||||||  |||||  |||||| |  |||||| ||| |||||| |||||||||| ||||| |||| |||    
T  43441502 taagagtggtccaccataagtcctattaattattttaatgtaaactgtttgatat--tttttttaaaggatgactattggattacgcaagtgtattttat 43441599  T
Q  189 cttacg 194  Q
    ||||||    
T  43441600 cttacg 43441605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 193
Target Start/End: Original strand, 47059278 - 47059371
Alignment:
Q  102 ccatagatcttattaattatttt--aacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatatcttac 193  Q
    ||||||| |||||||||| ||||  || ||||||| ||||||||  || ||| ||| ||||||||||||||||| || || |||| ||||||||    
T  47059278 ccatagaccttattaatttttttttaatttaaaccgtttgatctgtttatttaaaaggatgaccattggattacgcatgtgtattttatcttac 47059371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 192
Target Start/End: Complemental strand, 47060423 - 47060334
Alignment:
Q  102 ccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatatctta 192  Q
    ||||||| |||||||| | ||| || || || | |||||| ||||||||| ||| ||||||||||| ||||||||||| |||| |||||||    
T  47060423 ccatagaccttattaaatttttaaaatttaatcgtttgat-ttgttttttaaaaggatgaccattgaattacacaagtgtattttatctta 47060334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 46835906 - 46835951
Alignment:
Q  164 attggattacacaagtctattatatcttacgatgtaccaccaacac 209  Q
    |||| |||| ||||||||||| |||| |||||||||||||||||||    
T  46835906 attgtattagacaagtctattttatcatacgatgtaccaccaacac 46835951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 89 - 209
Target Start/End: Original strand, 44498617 - 44498736
Alignment:
Q  89 taagagtggttctccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatat 188  Q
    |||||||||| | ||||||||| ||||||||||||||| | ||||| |||||| || ||| || |||||||||||||| |||||| || ||||||| |||    
T  44498617 taagagtggtccaccatagatcctattaattattttaattaaaaccgtttgattttttttctt-aaaagatgaccattagattacgcatgtctattttat 44498715  T
Q  189 cttacgatgtaccaccaacac 209  Q
    |||| |||||| |||||||||    
T  44498716 cttaggatgtatcaccaacac 44498736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 209
Target Start/End: Complemental strand, 2312451 - 2312323
Alignment:
Q  78 tggaccaatcgtaagagtggttctccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaa 177  Q
    |||||||||| ||| |||||| | ||||||||| ||||||||||||||| ||||||  |||||| ||   |||| ||||||  |||||||||||| |||     
T  2312451 tggaccaatcttaaaagtggtccaccatagatcctattaattattttaatttaaactgtttgatttt---ttttaaaaagagaaccattggattagacag 2312355  T
Q  178 gtctattatatcttacgatgtaccaccaacac 209  Q
    | ||||| ||||||| ||||||||||||||||    
T  2312354 gcctattttatcttatgatgtaccaccaacac 2312323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 80 - 209
Target Start/End: Original strand, 7707737 - 7707864
Alignment:
Q  80 gaccaatcgtaagagtggttctccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaagt 179  Q
    |||||| | |||||||||| | ||||||||| ||||||||||||||| || |||| |||||  || ||| || ||||||  ||||||||||||  || ||    
T  7707737 gaccaaccttaagagtggtccaccatagatcctattaattattttaatttcaaccgtttga--ttttttctttaaaagagaaccattggattaggcaggt 7707834  T
Q  180 ctattatatcttacgatgtaccaccaacac 209  Q
    ||||| ||||||||||||||||| ||||||    
T  7707835 ctattttatcttacgatgtaccatcaacac 7707864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 89 - 193
Target Start/End: Original strand, 56085503 - 56085605
Alignment:
Q  89 taagagtggttctccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatat 188  Q
    |||||||||| | ||||||||| ||||||||||||||| ||||||| |||||  || |||||| ||| ||||||| |||||| ||||| || |||| |||    
T  56085503 taagagtggtccaccatagatcctattaattattttaatttaaaccgtttga--tttttttttaaaaggatgaccgttggatcacacatgtgtattttat 56085600  T
Q  189 cttac 193  Q
    |||||    
T  56085601 cttac 56085605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 194
Target Start/End: Original strand, 36845566 - 36845669
Alignment:
Q  89 taagagtggttctccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatat 188  Q
    |||||||||| | |||||| || |||||||||||||||  |||||  |||||| || |||||  ||||||||||||||||||||| || || |||| |||    
T  36845566 taagagtggtccaccataggtcctattaattattttaatgtaaactgtttgatatttttttt--aaaagatgaccattggattacgcaggtgtattttat 36845663  T
Q  189 cttacg 194  Q
    ||||||    
T  36845664 cttacg 36845669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 194
Target Start/End: Complemental strand, 38555226 - 38555134
Alignment:
Q  102 ccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatatcttacg 194  Q
    |||||||  ||||||| | |||||| ||||||| ||||||||| ||| || ||| ||  |||||||||||||||| ||||||| |||||||||    
T  38555226 ccatagactttattaaattttttaatttaaaccgtttgatcttttttatttaaaggagaaccattggattacacatgtctattttatcttacg 38555134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 172
Target Start/End: Original strand, 1794558 - 1794651
Alignment:
Q  78 tggaccaatcgtaagagtggttctccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggatta 172  Q
    |||||||| | |||||||||| | ||||||| |||||||| | |||||| ||||||| |||||||   |||||| ||||||||||||||| ||||    
T  1794558 tggaccaaccttaagagtggtccaccatagaccttattaaattttttaatttaaaccgtttgatcaa-ttttttaaaaagatgaccattgaatta 1794651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 50546963 - 50547036
Alignment:
Q  1 taataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatccctagctgttaactttaacc 74  Q
    |||||||| |||||||||  || ||||| ||||||   |||||||||||||||||||| ||||||| |||||||    
T  50546963 taataaaaatggcgttttagtccctcatcttttccaccgtttgccaaataaatccctacctgttaagtttaacc 50547036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 194
Target Start/End: Original strand, 1519979 - 1520070
Alignment:
Q  102 ccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatatcttacg 194  Q
    ||||||||| ||||||||||||||| ||||||| |||||| |   ||||| ||| |||||||||| ||||||  |||| |||| |||||||||    
T  1519979 ccatagatcctattaattattttaatttaaaccgtttgat-tatatttttaaaaggatgaccattagattacgtaagtgtattttatcttacg 1520070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 150
Target Start/End: Original strand, 13165640 - 13165712
Alignment:
Q  78 tggaccaatcgtaagagtggttctccatagatcttattaattattttaacttaaaccatttgatcttgttttt 150  Q
    |||||||| | |||||||||| | |||||||  | |||||||||||||| ||||||| ||||||||| |||||    
T  13165640 tggaccaaccttaagagtggtccaccatagacttcattaattattttaatttaaaccgtttgatctttttttt 13165712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 170
Target Start/End: Complemental strand, 27850908 - 27850816
Alignment:
Q  78 tggaccaatcgtaagagtggttctccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggat 170  Q
    |||||||| | ||| |||||| | ||||||||| ||||||||||||||| ||||||| ||||||  | |||||| ||| || || ||||||||    
T  27850908 tggaccaaccttaaaagtggtccaccatagatcctattaattattttaatttaaaccgtttgattctttttttttaaaggaggatcattggat 27850816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 209
Target Start/End: Complemental strand, 19750241 - 19750135
Alignment:
Q  102 ccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatatcttacgatgtacc 201  Q
    ||||||||| ||||||||||||||| ||||| | ||||||||| |||||| ||| || ||   |||||| || || || |||| |||||||||||| |||    
T  19750241 ccatagatcctattaattattttaatttaaatcgtttgatctt-ttttttaaaaggaggattgttggatcacgcaggtgtattctatcttacgatgaacc 19750143  T
Q  202 accaacac 209  Q
    | ||||||    
T  19750142 atcaacac 19750135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 209
Target Start/End: Original strand, 19789565 - 19789671
Alignment:
Q  102 ccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatatcttacgatgtacc 201  Q
    ||||||||| ||||||||||||||| ||||| | ||||||||| |||||| ||| || ||   |||||| || || || |||| |||||||||||| |||    
T  19789565 ccatagatcctattaattattttaatttaaatcgtttgatctt-ttttttaaaaggaggattgttggatcacgcaggtgtattctatcttacgatgaacc 19789663  T
Q  202 accaacac 209  Q
    | ||||||    
T  19789664 atcaacac 19789671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 194
Target Start/End: Original strand, 26629946 - 26630049
Alignment:
Q  89 taagagtggttctccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatat 188  Q
    |||||||||| | |||||| || |||||||||||||||  |||||  ||||||||  |||||| ||| |||||||||| ||||||  | || |||| |||    
T  26629946 taagagtggtccaccataggtcctattaattattttaatgtaaactgtttgatct--tttttttaaaggatgaccattagattacgtaggtgtattttat 26630043  T
Q  189 cttacg 194  Q
    ||||||    
T  26630044 cttacg 26630049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 77 - 134
Target Start/End: Original strand, 11968656 - 11968713
Alignment:
Q  77 atggaccaatcgtaagagtggttctccatagatcttattaattattttaacttaaacc 134  Q
    ||||||||| | |||||||||| |  |||||||| ||||||||||||||| |||||||    
T  11968656 atggaccaaccttaagagtggtccatcatagatcctattaattattttaatttaaacc 11968713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 89 - 194
Target Start/End: Complemental strand, 52138753 - 52138648
Alignment:
Q  89 taagagtggttctccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatat 188  Q
    ||||| |||| | ||||||||| ||||||||||| ||| ||||||| |||||| || |||||| ||| || |   |||||||||| || || |||| |||    
T  52138753 taagaatggtccaccatagatcctattaattattctaatttaaaccgtttgatttttttttttaaaaggagggttattggattacgcatgtgtattttat 52138654  T
Q  189 cttacg 194  Q
    ||||||    
T  52138653 cttacg 52138648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 7708847 - 7708776
Alignment:
Q  1 taataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatccctagctgttaactttaac 73  Q
    |||||||| |||||||||  || ||||  |||| || ||||||||||||||||||| || |||||||||||||    
T  7708847 taataaaagtggcgttttagtccctcacctttttctctgtttgccaaataaatcccaag-tgttaactttaac 7708776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 23202075 - 23202123
Alignment:
Q  161 accattggattacacaagtctattatatcttacgatgtaccaccaacac 209  Q
    ||||||| ||||  || ||||||| ||||||||||||||||||||||||    
T  23202075 accattgaattaagcaggtctattttatcttacgatgtaccaccaacac 23202123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 12359738 - 12359662
Alignment:
Q  1 taataaaactggcgttttgatcgctcattttttcctatgtttgccaaataaatccctagctgttaactttaacctta 77  Q
    |||||||| |||||||||| || ||||||||||||| |||| ||||||||||||| |||||||||||||||||||||    
T  12359738 taataaaattggcgttttggtccctcattttttcctttgttcgccaaataaatccgtagctgttaactttaacctta 12359662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 78 - 209
Target Start/End: Complemental strand, 18616975 - 18616846
Alignment:
Q  78 tggaccaatcgtaagagtggttctccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaa 177  Q
    ||||||| || ||| |||||| | ||||||||| ||||||||||||||| || |||| |||||| ||  ||||  ||||||  |||||||||||| | |     
T  18616975 tggaccagtcttaaaagtggtccaccatagatcctattaattattttaatttcaaccgtttgatttt--ttttaaaaaagagaaccattggattagatag 18616878  T
Q  178 gtctattatatcttacgatgtaccaccaacac 209  Q
    ||||||| ||||||||||||||||||||||||    
T  18616877 gtctattttatcttacgatgtaccaccaacac 18616846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 209
Target Start/End: Original strand, 29219532 - 29219660
Alignment:
Q  78 tggaccaatcgtaagagtggttctccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaa 177  Q
    |||||||||| ||| |||||| | ||||||||| ||||||||||||||| || |||| |||||| ||        ||||||  |||||||||||| | |     
T  29219532 tggaccaatcttaaaagtggtccaccatagatcctattaattattttaatttcaaccgtttgattttaaaaa---aaaagagaaccattggattagatag 29219628  T
Q  178 gtctattatatcttacgatgtaccaccaacac 209  Q
    ||||||| ||||||||||||||||||||||||    
T  29219629 gtctattttatcttacgatgtaccaccaacac 29219660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 209
Target Start/End: Original strand, 29332831 - 29332959
Alignment:
Q  78 tggaccaatcgtaagagtggttctccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaa 177  Q
    |||||||||| ||| |||||| | ||||||||| ||||||||||||||| || |||| |||||| ||        ||||||  |||||||||||| | |     
T  29332831 tggaccaatcttaaaagtggtccaccatagatcctattaattattttaatttcaaccgtttgattttaaaaa---aaaagagaaccattggattagatag 29332927  T
Q  178 gtctattatatcttacgatgtaccaccaacac 209  Q
    ||||||| ||||||||||||||||||||||||    
T  29332928 gtctattttatcttacgatgtaccaccaacac 29332959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 34467662 - 34467782
Alignment:
Q  89 taagagtggttctccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaa-gatgaccattggattacacaagtctattata 187  Q
    |||||||||| | ||||| | |||||||| | |||||| ||||||  |||||| || |||||| |||| |||||||| ||||||| |   ||||||| ||    
T  34467662 taagagtggtccaccataaaccttattaagttttttaatttaaactgtttgatattttttttttaaaatgatgaccactggattatatgtgtctattgta 34467761  T
Q  188 tcttacgatgtaccaccaaca 208  Q
     |||||||||||||| |||||    
T  34467762 acttacgatgtaccaacaaca 34467782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 7436668 - 7436735
Alignment:
Q  136 tttgatcttgttttttcaaaagatgaccattggattacacaagtctattatatcttacgatgtaccac 203  Q
    ||||||||| |||||  |||||| |||| ||||||||||||  |||||| ||||||| ||||||||||    
T  7436668 tttgatcttttttttaaaaaagaggaccgttggattacacatatctattttatcttaggatgtaccac 7436735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 151
Target Start/End: Complemental strand, 42641820 - 42641758
Alignment:
Q  89 taagagtggttctccatagatcttattaattattttaacttaaaccatttgatcttgtttttt 151  Q
    ||||||||||   ||||||||| ||||||||||||||| ||||||  ||||||||| ||||||    
T  42641820 taagagtggtctaccatagatcctattaattattttaatttaaactgtttgatcttttttttt 42641758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 89 - 190
Target Start/End: Original strand, 8320913 - 8321013
Alignment:
Q  89 taagagtggttctccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatat 188  Q
    |||||| ||| | ||||||||  ||||||||||||||| ||||||| |||||| |  |||||| |||||| || |||| ||| || |||||||||| |||    
T  8320913 taagagcggtccaccatagattatattaattattttaatttaaaccgtttgat-tgttttttttaaaagaggaacatttgatcacgcaagtctattttat 8321011  T
Q  189 ct 190  Q
    ||    
T  8321012 ct 8321013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 141
Target Start/End: Original strand, 32469306 - 32469358
Alignment:
Q  89 taagagtggttctccatagatcttattaattattttaacttaaaccatttgat 141  Q
    |||||||||| | | ||||||| ||||||||||||||| ||||||| ||||||    
T  32469306 taagagtggtccactatagatcctattaattattttaatttaaaccctttgat 32469358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 29381689 - 29381572
Alignment:
Q  89 taagagtggttctccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatat 188  Q
    |||||||| | | ||||||||| ||||||||||||||| || |||| |||||| ||  ||||  ||||||| ||||||||||||  || ||||||| |||    
T  29381689 taagagtgatccaccatagatcctattaattattttaatttcaaccgtttgatttt--ttttcaaaaagataaccattggattaggcaggtctattttat 29381592  T
Q  189 cttacgatgtaccaccaaca 208  Q
    ||||||||||||||||||||    
T  29381591 cttacgatgtaccaccaaca 29381572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 18346709 - 18346592
Alignment:
Q  89 taagagtggttctccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatat 188  Q
    |||||||||| | | ||| ||| ||||||||||||||| ||||||| |||||| || ||||   |||||   ||||||||||||  |||||||||| |||    
T  18346709 taagagtggtccactataaatcctattaattattttaatttaaaccgtttgattttttttt---aaaagtaaaccattggattatgcaagtctattttat 18346613  T
Q  189 cttacgatgtaccaccaacac 209  Q
    |||||||||||||||||||||    
T  18346612 cttacgatgtaccaccaacac 18346592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 17837773 - 17837890
Alignment:
Q  89 taagagtggttctccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatat 188  Q
    |||||||||| | ||||||||| ||||||||||||||| || |||| |||||| ||  | ||  ||| ||| ||||||||||||  || ||||||| |||    
T  17837773 taagagtggtccaccatagatcctattaattattttaatttcaaccgtttgatttt--tcttaaaaacgataaccattggattaggcaggtctattttat 17837870  T
Q  189 cttacgatgtaccaccaaca 208  Q
    ||||||||||||||||||||    
T  17837871 cttacgatgtaccaccaaca 17837890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 93 - 193
Target Start/End: Original strand, 23392375 - 23392475
Alignment:
Q  93 agtggttctccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatatctta 192  Q
    |||||| | ||||||||| ||||||||||||||| || |||| |||||| || |||||| ||||||| |||||| |||||  |||||||||| |||||||    
T  23392375 agtggtccaccatagatcctattaattattttaatttcaaccgtttgatattttttttttaaaagataaccattagattatgcaagtctattttatctta 23392474  T
Q  193 c 193  Q
    |    
T  23392475 c 23392475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 232254 - 232303
Alignment:
Q  24 ctcattttttcctatgtttgccaaataaatccctagctgttaactttaac 73  Q
    |||| ||||||||  |||||||||||||||||| | ||||||||||||||    
T  232254 ctcactttttcctccgtttgccaaataaatcccaaactgttaactttaac 232303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 94 - 151
Target Start/End: Complemental strand, 7312238 - 7312182
Alignment:
Q  94 gtggttctccatagatcttattaattattttaacttaaaccatttgatcttgtttttt 151  Q
    ||||||| || ||||||||||||||| |||||| || |||||||||||||| ||||||    
T  7312238 gtggttcaccgtagatcttattaatt-ttttaatttcaaccatttgatcttttttttt 7312182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 141
Target Start/End: Complemental strand, 7311684 - 7311632
Alignment:
Q  89 taagagtggttctccatagatcttattaattattttaacttaaaccatttgat 141  Q
    |||||||||| | ||||| ||| ||||||||||||||| ||||||| ||||||    
T  7311684 taagagtggtccaccataaatcctattaattattttaatttaaaccgtttgat 7311632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 194
Target Start/End: Original strand, 11722955 - 11723046
Alignment:
Q  102 ccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaagtctattatatcttacg 194  Q
    ||||||||| ||||||||||| ||| ||||||| |||||| || |||||| ||| || |  |||||||||||||| || |||| | |||||||    
T  11722955 ccatagatcctattaattattctaatttaaaccgtttgat-tttttttttaaaaggagggtcattggattacacaggtgtattttctcttacg 11723046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2071 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold2071
Description:

Target: scaffold2071; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 77 - 172
Target Start/End: Complemental strand, 653 - 559
Alignment:
Q  77 atggaccaatcgtaagagtggttctccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggatta 172  Q
    ||||||||| | |||||||||| | ||||||| |||||||| | |||||| ||||||| |||||||| ||||||| ||||||||||||||||||||    
T  653 atggaccaaccttaagagtggtccaccatagaccttattaaattttttaatttaaaccgtttgatct-gttttttaaaaagatgaccattggatta 559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 78 - 209
Target Start/End: Complemental strand, 43544 - 43416
Alignment:
Q  78 tggaccaatcgtaagagtggttctccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaa 177  Q
    |||||||||| |||||||||| | ||||||||| ||||||||||||||| ||||||| |||||   | |||||| ||||||  |||||| |||||  |||    
T  43544 tggaccaatcttaagagtggtccaccatagatcctattaattattttaatttaaaccgtttga---ttttttttaaaaagagaaccatttgattaggcaa 43448  T
Q  178 gtctattatatcttacgatgtaccaccaacac 209  Q
    ||||||| ||||| ||||| || |||| ||||    
T  43447 gtctattttatctaacgatatatcaccgacac 43416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 209
Target Start/End: Complemental strand, 54154 - 54025
Alignment:
Q  78 tggaccaatcgtaagagtggttctccatagatcttattaattattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggattacacaa 177  Q
    |||||||| | ||| |||||| | ||||||||| ||||||||||||||| ||||||  |||||| ||  ||||  ||||||    ||||||||||  |||    
T  54154 tggaccaaccttaaaagtggtccaccatagatcctattaattattttaatttaaactgtttgatttt--ttttaaaaaagagtgtcattggattaagcaa 54057  T
Q  178 gtctattatatcttacgatgtaccaccaacac 209  Q
    ||||||| |||| |||||||||||||||||||    
T  54056 gtctattttatcatacgatgtaccaccaacac 54025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 77 - 172
Target Start/End: Complemental strand, 125203 - 125108
Alignment:
Q  77 atggaccaatcgtaagagtggttctccatagatcttattaa-ttattttaacttaaaccatttgatcttgttttttcaaaagatgaccattggatta 172  Q
    ||||||||| | ||| |||||| | ||||||| |||||||| || |||||| ||||||| |||||||  ||||||| ||||||||||||||||||||    
T  125203 atggaccaaccttaaaagtggtccaccatagaccttattaaatttttttaatttaaaccctttgatca-gttttttaaaaagatgaccattggatta 125108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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