View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4263_low_17 (Length: 258)
Name: NF4263_low_17
Description: NF4263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4263_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 49 - 242
Target Start/End: Complemental strand, 43563355 - 43563162
Alignment:
| Q |
49 |
gagataaaagattatctattatcattgtaaatttgtttacacgaacaactcaccatttcgttttcggtttagaagcgggcctaaacctgaaaaagaaaga |
148 |
Q |
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| T |
43563355 |
gagataaaagatcatctattatcattgtaaatttgtttacacgaacaactcaccatttcgttttcggtttagaagcgggcctaaacctgaaaaagaaaga |
43563256 |
T |
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| Q |
149 |
ttaacccgtaactaaacgagatgtaaaaacaacaatacaatcagttaaatataacatactaaattgagtgggacactgttcataatatatcaaa |
242 |
Q |
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| T |
43563255 |
ttaacccgtaactaaacgagatgtaaaaacaacaatacaatcagttaaatataacatactaaattgagtgggacactgttcataatatatcaaa |
43563162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 24752926 - 24752890
Alignment:
| Q |
3 |
tgcttttggtggttaatatcattctatttttgattgt |
39 |
Q |
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| T |
24752926 |
tgcttttggtggttaatataattctatttttgattgt |
24752890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 27895415 - 27895376
Alignment:
| Q |
1 |
gttgcttttggtggttaatatcattctatttttgattgtt |
40 |
Q |
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| T |
27895415 |
gttgcttttggtggttaatataattccatttttgattgtt |
27895376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 19164496 - 19164457
Alignment:
| Q |
1 |
gttgcttttggtggttaatatcattctatttttgattgtt |
40 |
Q |
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| T |
19164496 |
gttgcttttggtggttaatataattccatttttgattgtt |
19164457 |
T |
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