View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4263_low_23 (Length: 239)
Name: NF4263_low_23
Description: NF4263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4263_low_23 |
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| [»] scaffold0062 (3 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: scaffold0062 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 48362 - 48140
Alignment:
| Q |
17 |
attgtcttcgttattgggcatggcagaattattagcgttccaaacaaaaataccagggagtgattcgcattcgaggagggatttgcaacccttaatgaag |
116 |
Q |
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|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
48362 |
attgtcttcgttggagggcatggcagaatcattagcgttccaaacaaaaataccagggagtgattcgctttcgaggagggatttgcaacccttaatgaag |
48263 |
T |
|
| Q |
117 |
acatctcgtgtcatgttagtgttactatctggatcagtgctgactcctggcaagagtttaacatcagtaccgtattcattaagcaacttattatagagat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48262 |
acatctcgtgtcatgttagtgttactatctggatcagtgctgactcctggcaagagtttaacatcagtaccgtattcattaagcaacttattatagagat |
48163 |
T |
|
| Q |
217 |
ttaccaattcatccgcgctggac |
239 |
Q |
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||||||||||||||||||||||| |
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| T |
48162 |
ttaccaattcatccgcgctggac |
48140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 60901 - 60679
Alignment:
| Q |
17 |
attgtcttcgttattgggcatggcagaattattagcgttccaaacaaaaataccagggagtgattcgcattcgaggagggatttgcaacccttaatgaag |
116 |
Q |
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|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
60901 |
attgtcttcgttggagggcatggcagaatcattagcgttccaaacaaaaataccagggagtgattcgctttcgaggagggatttgcaacccttaatgaag |
60802 |
T |
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| Q |
117 |
acatctcgtgtcatgttagtgttactatctggatcagtgctgactcctggcaagagtttaacatcagtaccgtattcattaagcaacttattatagagat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
60801 |
acatctcgtgtcatgttagtgttactatctggatcagtgctgactcctggcaagagtttaacatcagtaccgtattcattaagcaacttattatagagat |
60702 |
T |
|
| Q |
217 |
ttaccaattcatccgcgctggac |
239 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
60701 |
ttaccaattcatccgcgctggac |
60679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 73020 - 72798
Alignment:
| Q |
17 |
attgtcttcgttattgggcatggcagaattattagcgttccaaacaaaaataccagggagtgattcgcattcgaggagggatttgcaacccttaatgaag |
116 |
Q |
| |
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|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
73020 |
attgtcttcgttggagggcatggcagaatcattagcgttccaaacaaaaataccagggagtgattcgctttcgaggagggatttgcaacccttaatgaag |
72921 |
T |
|
| Q |
117 |
acatctcgtgtcatgttagtgttactatctggatcagtgctgactcctggcaagagtttaacatcagtaccgtattcattaagcaacttattatagagat |
216 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
72920 |
acatctcgtgtcatgttagtgttactatctggatcagtgctgactcctggcaagagtttaacatcagtaccgtattcattaagcaacttattatagagat |
72821 |
T |
|
| Q |
217 |
ttaccaattcatccgcgctggac |
239 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
72820 |
ttaccaattcatccgcgctggac |
72798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 18691711 - 18691489
Alignment:
| Q |
17 |
attgtcttcgttattgggcatggcagaattattagcgttccaaacaaaaataccagggagtgattcgcattcgaggagggatttgcaacccttaatgaag |
116 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
18691711 |
attgtcttcgttggagggcatggcagaatcattagcgttccaaacaaaaataccagggagtgattcgctttcgaggagggatttgcaacccttaatgaag |
18691612 |
T |
|
| Q |
117 |
acatctcgtgtcatgttagtgttactatctggatcagtgctgactcctggcaagagtttaacatcagtaccgtattcattaagcaacttattatagagat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18691611 |
acatctcgtgtcatgttagtgttactatctggatcagtgctgactcctggcaagagtttaacatcagtaccgtattcattaagcaacttattatagagat |
18691512 |
T |
|
| Q |
217 |
ttaccaattcatccgcgctggac |
239 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
18691511 |
ttaccaattcatccgcgctggac |
18691489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 15699450 - 15699228
Alignment:
| Q |
17 |
attgtcttcgttattgggcatggcagaattattagcgttccaaacaaaaataccagggagtgattcgcattcgaggagggatttgcaacccttaatgaag |
116 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
15699450 |
attgtcttcgttggagggcatggcagaatcattagcgttccaaacaaaaataccagggagtgattcgctttcgaggagggatttgcaacccttaatgaag |
15699351 |
T |
|
| Q |
117 |
acatctcgtgtcatgttagtgttactatctggatcagtgctgactcctggcaagagtttaacatcagtaccgtattcattaagcaacttattatagagat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15699350 |
acatctcgtgtcatgttagtgttactatctggatcagtgctgactcctggcaagagtttaacatcagtaccgtattcattaagcaacttattatagagat |
15699251 |
T |
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| Q |
217 |
ttaccaattcatccgcgctggac |
239 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
15699250 |
ttaccaattcatccgcgctggac |
15699228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 15711989 - 15711767
Alignment:
| Q |
17 |
attgtcttcgttattgggcatggcagaattattagcgttccaaacaaaaataccagggagtgattcgcattcgaggagggatttgcaacccttaatgaag |
116 |
Q |
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|
|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
15711989 |
attgtcttcgttggagggcatggcagaatcattagcgttccaaacaaaaataccagggagtgattcgctttcgaggagggatttgcaacccttaatgaag |
15711890 |
T |
|
| Q |
117 |
acatctcgtgtcatgttagtgttactatctggatcagtgctgactcctggcaagagtttaacatcagtaccgtattcattaagcaacttattatagagat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15711889 |
acatctcgtgtcatgttagtgttactatctggatcagtgctgactcctggcaagagtttaacatcagtaccgtattcattaagcaacttattatagagat |
15711790 |
T |
|
| Q |
217 |
ttaccaattcatccgcgctggac |
239 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
15711789 |
ttaccaattcatccgcgctggac |
15711767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 15724467 - 15724245
Alignment:
| Q |
17 |
attgtcttcgttattgggcatggcagaattattagcgttccaaacaaaaataccagggagtgattcgcattcgaggagggatttgcaacccttaatgaag |
116 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
15724467 |
attgtcttcgttggagggcatggcagaatcattagcgttccaaacaaaaataccagggagtgattcgctttcgaggagggatttgcaacccttaatgaag |
15724368 |
T |
|
| Q |
117 |
acatctcgtgtcatgttagtgttactatctggatcagtgctgactcctggcaagagtttaacatcagtaccgtattcattaagcaacttattatagagat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15724367 |
acatctcgtgtcatgttagtgttactatctggatcagtgctgactcctggcaagagtttaacatcagtaccgtattcattaagcaacttattatagagat |
15724268 |
T |
|
| Q |
217 |
ttaccaattcatccgcgctggac |
239 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
15724267 |
ttaccaattcatccgcgctggac |
15724245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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