View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4263_low_4 (Length: 550)
Name: NF4263_low_4
Description: NF4263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4263_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 478; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 18 - 533
Target Start/End: Complemental strand, 38266995 - 38266476
Alignment:
| Q |
18 |
atatacacaccaacacatagacatcttagtcaagagcaaacataattatgaacaagacaaaaaggtagtaatgcattgcgggacagccaaattactttct |
117 |
Q |
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| T |
38266995 |
atatacacaccaacacatagacatcttagtcaagagcaaacataattatgaacaagacaaaaaggtagtaatgcattgcgggacagccaaattactttct |
38266896 |
T |
|
| Q |
118 |
ttggccaggtttagagaatgttattgtcaccttaataggcttccatgtgattactacacttaaatctggtcaaggctagtttaaatttcattactttaat |
217 |
Q |
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| T |
38266895 |
ttggccaggtttagagaatgttattgtcaccttaataggcttccatgtgattactacacttaaatctggtcaaggctagtttaaatttcattactttaat |
38266796 |
T |
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| Q |
218 |
aagtaaatgactttgttatgttactatattatttttatttcaagcactaccnnnnnnnttatattatttatttcaatatcaaaagctaatgttgttaatt |
317 |
Q |
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| T |
38266795 |
aagtaaatgactttgttatgttactatattatttttatttcaagcactaccaaaaaaaatatattatttatttcaatatcaaaagctaatgttgttaatt |
38266696 |
T |
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| Q |
318 |
----attagtactagtatcaatataatttatttattcccaacgataggattttggatgacaaaattattagtttttggataacaaaaatttgaatgctat |
413 |
Q |
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| T |
38266695 |
attaattagtactagtatcaatataatttatttattcccaacgataggattttggatgacaaaattattagtttttggataacaaaaatttgaatgctat |
38266596 |
T |
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| Q |
414 |
acaataacttcaaaatgttaggattttgattttcttcaacttcgttacttgttagttggtgcttcaatttgataatttcaaaaactatttgttagatgaa |
513 |
Q |
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| T |
38266595 |
acaataacttcaaaatgttaggattttgattttcttcaacttcgttacttgttagttggtgcttcaatttgataatttcaaaaactatttgttagatgaa |
38266496 |
T |
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| Q |
514 |
tcctccctcaagaagttaat |
533 |
Q |
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| T |
38266495 |
tcctccctcaagaagttaat |
38266476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 153 - 238
Target Start/End: Complemental strand, 39783802 - 39783717
Alignment:
| Q |
153 |
taggcttccatgtgattactacacttaaatctggtcaaggctagtttaaatttcattactttaataagtaaatgactttgttatgt |
238 |
Q |
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||||||||||||||| |||| || |||||||| ||||||| |||||| || ||| |||| |||||||||||||||||||||||||| |
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| T |
39783802 |
taggcttccatgtgagtactccagttaaatctagtcaaggttagtttgaagttcgttacattaataagtaaatgactttgttatgt |
39783717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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