View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4263_low_7 (Length: 493)
Name: NF4263_low_7
Description: NF4263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4263_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 445; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Complemental strand, 5639112 - 5638624
Alignment:
| Q |
1 |
gcacatcgctttatcatgcaaattttatagttcagacctgcaaattcaggtattaatgaaggaaacgtgggggaaaaaatgaaagaagttccgtgaaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5639112 |
gcacatcgctttatcatgcaaattttatagttcagacctgcaaattcaggtattaatgaaggaaacgtgggggaaaaaatgaaagaagttccgtgaaaaa |
5639013 |
T |
|
| Q |
101 |
cactccctctgaactcaaatttaagtaaaattaactaaatacgtactaagtaagaatattagttaagcttgcttatttttcttggtgcaataagaaaatt |
200 |
Q |
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| T |
5639012 |
cactccctccgaactcaaatttaagtaaaattaactaaatacgtactaattaagaatattagttaaccttgcttatttttcttggtgcaataagaaaatt |
5638913 |
T |
|
| Q |
201 |
gcattctccgaactatcattctc-tcactaaatttcctttgaaacttgtttcatgagagcattaattgagtggtgtttaacactaattgaaatataacag |
299 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5638912 |
gcattctccgaactatcattctcttcactaaatttcctttgaaacttgtttcatgagagcattaattgagtggtgtttaacactaattgaaatataacag |
5638813 |
T |
|
| Q |
300 |
taatccagtaaaattaattagaattttcttatatattatggaccacaaaccatgactannnnnnnnacttaaatttgagtttggaggaagtaaattctta |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
5638812 |
taatccagtaaaattaattagaattttcttatatattatggaccacaaaccatgactattttttttacttaaatttgagtttggaggaagtaaattctta |
5638713 |
T |
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| Q |
400 |
atttccacatttacaatctttcttctcttttagtgtttcagtatacatggaaatccaagaaggttatgaacagtatcacatatgacact |
488 |
Q |
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| T |
5638712 |
atttccacatttacaatctttcttctcttttagtgtttcagtatacatggaaatccaagaaggttatgaacagtatcacatatgacact |
5638624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 22965322 - 22965261
Alignment:
| Q |
1 |
gcacatcgctttatcatgcaaattttatagttcagacctgcaaattcaggtattaatgaagg |
62 |
Q |
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||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
22965322 |
gcacatcacttaatcatgcaaattttatagttcggacctgcaaattcaggtattaatgaagg |
22965261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 38954595 - 38954654
Alignment:
| Q |
1 |
gcacatcgctttatcatgcaaattttatagttcagacctgcaaattcaggtattaatgaa |
60 |
Q |
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||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38954595 |
gcacatcgcttaatcatgcaaattttatagtttggacctgcaaattcaggtattaatgaa |
38954654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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