View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4263_low_8 (Length: 394)
Name: NF4263_low_8
Description: NF4263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4263_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 87 - 379
Target Start/End: Original strand, 33734904 - 33735194
Alignment:
| Q |
87 |
tattttcgatcaatttctaagttattttgaacttctttcgacgccttcacaacattgactctaataaaatcaatgatctcaagcttaggtcatcaaattt |
186 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33734904 |
tattttcgagcaatttctaagttattt-gaacttctttcgacgccttcacaacattgactctaataaaatcaatgatctcaggcttaggtcatcaaattt |
33735002 |
T |
|
| Q |
187 |
taaatttcactaacaaatttaactatcatatattgattctttatttcgatacttgttagacactccttatgtttttatagggttttaattttaatatatt |
286 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
33735003 |
taaatctcactaacaaatttaactatcatatattgattctttatttcgatgcttgttagacactccttatg-ttttatagggttttaattttaatatatt |
33735101 |
T |
|
| Q |
287 |
gtacttttggcttcttcaaaagcctatcatagaataaaagcgtacaataaaaccaataatggctcatactaccaaaataattggagtgcatga |
379 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33735102 |
gtacttttggcttcttcaaaaacctatcatagaataaaagcgtacaataaaaccaataatggctcatactaccaaaataattggagtgcatga |
33735194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 33734797 - 33734834
Alignment:
| Q |
13 |
aatattataaagtaatagaaatgtaaatatactaagcc |
50 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33734797 |
aatattataaagtaatagaaatgtaaatatactaagcc |
33734834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University