View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4263_low_9 (Length: 377)

Name: NF4263_low_9
Description: NF4263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4263_low_9
NF4263_low_9
[»] chr3 (6 HSPs)
chr3 (1-122)||(36627197-36627318)
chr3 (171-289)||(34224043-34224161)
chr3 (301-363)||(34223946-34224008)
chr3 (132-177)||(34224486-34224531)
chr3 (1-42)||(14206572-14206613)
chr3 (1-42)||(14214320-14214361)
[»] chr7 (6 HSPs)
chr7 (1-122)||(7147589-7147710)
chr7 (9-135)||(29657285-29657419)
chr7 (9-96)||(22794074-22794162)
chr7 (9-99)||(29408972-29409063)
chr7 (9-69)||(29658376-29658437)
chr7 (12-63)||(40918099-40918151)
[»] scaffold0171 (1 HSPs)
scaffold0171 (9-122)||(28961-29075)
[»] chr1 (5 HSPs)
chr1 (9-178)||(40778666-40778837)
chr1 (9-135)||(49619519-49619646)
chr1 (171-211)||(40779044-40779084)
chr1 (1-42)||(52439074-52439115)
chr1 (9-64)||(40779411-40779467)
[»] chr8 (3 HSPs)
chr8 (19-178)||(16497115-16497275)
chr8 (9-83)||(11080778-11080853)
chr8 (171-211)||(16497493-16497533)
[»] scaffold2117 (1 HSPs)
scaffold2117 (9-121)||(232-345)
[»] scaffold0034 (1 HSPs)
scaffold0034 (9-118)||(98334-98444)
[»] chr4 (4 HSPs)
chr4 (9-122)||(37642246-37642360)
chr4 (9-90)||(5547188-5547270)
chr4 (9-122)||(5548369-5548477)
chr4 (9-72)||(54373766-54373830)
[»] chr6 (3 HSPs)
chr6 (9-135)||(682550-682676)
chr6 (9-77)||(21455430-21455499)
chr6 (9-61)||(18498268-18498321)
[»] chr5 (5 HSPs)
chr5 (9-119)||(14356731-14356842)
chr5 (9-83)||(30915772-30915847)
chr5 (9-136)||(14357570-14357705)
chr5 (9-67)||(33362349-33362407)
chr5 (9-76)||(30915873-30915941)
[»] chr2 (2 HSPs)
chr2 (17-97)||(12365767-12365848)
chr2 (9-83)||(20921807-20921882)
[»] scaffold0041 (2 HSPs)
scaffold0041 (12-63)||(54944-54996)
scaffold0041 (9-43)||(913-947)
[»] scaffold0065 (1 HSPs)
scaffold0065 (9-42)||(35647-35680)


Alignment Details
Target: chr3 (Bit Score: 106; Significance: 6e-53; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 36627197 - 36627318
Alignment:
Q  1 aaaaagttatcatttcaacttcaacaaaaattacataatcaaactttaaatctacaattaacaccacaaccatcatccaaaattgaatcaccaaaaccca 100  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||    
T  36627197 aaaaatttatcatttcaacttcaacaaaaatcacataatcaaactttaaatctacaattaacaccacaaccatcatccaaaattggatcaccaaaagcca 36627296  T
Q  101 ttaactccaaaaagaaactttc 122  Q
    ||||||||||||||||||||||    
T  36627297 ttaactccaaaaagaaactttc 36627318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 171 - 289
Target Start/End: Complemental strand, 34224161 - 34224043
Alignment:
Q  171 cagtagcagtgctcttgaagtagagacattgttctggaaagctacggttgataaaccgttttctgttgagtatgctaatgatatgccgggttctgctttt 270  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||     
T  34224161 cagtaacagtgctcttgaaatagagacattgttctggaaagctacggtggataaaccgttttctgttgagtatgctaatgatatgccgggttctgctttc 34224062  T
Q  271 gcgtacacggtggataata 289  Q
    ||| |||||||||| ||||    
T  34224061 gcggacacggtggagaata 34224043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 301 - 363
Target Start/End: Complemental strand, 34224008 - 34223946
Alignment:
Q  301 ttggaatatgagaagggtttcaagggccaaagggtctttgttgaggtttatgaaggaggagat 363  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34224008 ttggaatatgaggagggtttcaagggccaaagggtctttgttgaggtttatgaaggaggagat 34223946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 177
Target Start/End: Complemental strand, 34224531 - 34224486
Alignment:
Q  132 aatcaaacggcgacgtattcccatgattaaaatccttgccagtagc 177  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||    
T  34224531 aatcaaacggcgacgtattcccatggttaaaatccatgccagtagc 34224486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 14206613 - 14206572
Alignment:
Q  1 aaaaagttatcatttcaacttcaacaaaaattacataatcaa 42  Q
    ||||| |||||||||||||||||| |||||| ||||||||||    
T  14206613 aaaaatttatcatttcaacttcaataaaaatcacataatcaa 14206572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 14214361 - 14214320
Alignment:
Q  1 aaaaagttatcatttcaacttcaacaaaaattacataatcaa 42  Q
    ||||| |||||||||||||||||| |||||| ||||||||||    
T  14214361 aaaaatttatcatttcaacttcaataaaaatcacataatcaa 14214320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 7147710 - 7147589
Alignment:
Q  1 aaaaagttatcatttcaacttcaacaaaaattacataatcaaactttaaatctacaattaacaccacaaccatcatccaaaattgaatcaccaaaaccca 100  Q
    ||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||    
T  7147710 aaaaatttatcatttcaatttcaacaaaaatcacataatcaaactttaaatctacaattaacaccacaaccatcatccaaaattggatcactgaaaccca 7147611  T
Q  101 ttaactccaaaaagaaactttc 122  Q
    ||||||||||||||||||||||    
T  7147610 ttaactccaaaaagaaactttc 7147589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 9 - 135
Target Start/End: Original strand, 29657285 - 29657419
Alignment:
Q  9 atcatttcaacttcaacaaaaattacataatcaaac-tttaaatctacaattaacaccacaaccatcatccaaaattgaatca-------ccaaaaccca 100  Q
    |||||||||||||||||||||   | | |||||||| ||||||| || |||||||||||| |||||||| |||||| | ||||       ||||||| ||    
T  29657285 atcatttcaacttcaacaaaatccaaaaaatcaaacatttaaatttataattaacaccaccaccatcattcaaaatcggatcatcaaagtccaaaactca 29657384  T
Q  101 ttaactccaaaaagaaactttctatcactaaaatc 135  Q
    |||||||||||||||||||||||||||| ||||||    
T  29657385 ttaactccaaaaagaaactttctatcaccaaaatc 29657419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 96
Target Start/End: Complemental strand, 22794162 - 22794074
Alignment:
Q  9 atcatttcaacttcaacaaaaattacataatcaaa-ctttaaatctacaattaacaccacaaccatcatccaaaattgaatcaccaaaa 96  Q
    ||||||||||||||||||||||  ||||||||||| |||||||| || |||||||||||| || ||||| |||||| | || |||||||    
T  22794162 atcatttcaacttcaacaaaaaccacataatcaaacctttaaatttataattaacaccaccacaatcattcaaaatcggattaccaaaa 22794074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 29409063 - 29408972
Alignment:
Q  9 atcatttcaacttcaacaaaaattacataatcaaact-ttaaatctacaattaacaccacaaccatcatccaaaattgaatcaccaaaaccc 99  Q
    ||||||| ||||||||||||||  | | ||||||||  ||||||| | |||||||||||| ||||||||| ||||||| |||||||||||||    
T  29409063 atcattttaacttcaacaaaaaccataaaatcaaacccttaaatccataattaacaccaccaccatcatctaaaattggatcaccaaaaccc 29408972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 29658437 - 29658376
Alignment:
Q  9 atcatttcaacttcaacaaaaattacataatcaaact-ttaaatctacaattaacaccacaa 69  Q
    ||||||||||||||||||||||  ||||||||||||| ||||| ||| |||||||| |||||    
T  29658437 atcatttcaacttcaacaaaaaccacataatcaaactcttaaaactataattaacatcacaa 29658376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 40918151 - 40918099
Alignment:
Q  12 atttcaacttcaacaaaaattacataatcaaa-ctttaaatctacaattaaca 63  Q
    |||||||||||||||||||  ||||||||||| ||||||||||| ||||||||    
T  40918151 atttcaacttcaacaaaaaccacataatcaaacctttaaatctataattaaca 40918099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 9 - 122
Target Start/End: Complemental strand, 29075 - 28961
Alignment:
Q  9 atcatttcaacttcaacaaaaattacataatcaaac-tttaaatctacaattaacaccacaaccatcatccaaaattgaatcaccaaaacccattaactc 107  Q
    ||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  29075 atcatttcaacttcaacaaaaaccacataatcaaacctttaaatctacaattaacaccacaaccatcatccaaaattggatcaccaaaacccattcactc 28976  T
Q  108 caaaaagaaactttc 122  Q
    |||||||||||||||    
T  28975 caaaaagaaactttc 28961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 9 - 178
Target Start/End: Original strand, 40778666 - 40778837
Alignment:
Q  9 atcatttcaacttcaacaaaaattacataatcaaac-tttaaatctacaa--ttaacaccacaaccatcatccaaaattgaatcaccaaaacccattaac 105  Q
    ||||||||||||||| ||||||  ||| |||||||| ||||||| || ||  |||||||||| |||||||| |||||| | |||||||||||||||||||    
T  40778666 atcatttcaacttcagcaaaaaccacaaaatcaaacatttaaatttataaaattaacaccaccaccatcattcaaaatcggatcaccaaaacccattaac 40778765  T
Q  106 tccaaaaagaaactttctatcactaaaatcaaacggcgacgtattcccatgattaaaatccttgccagtagca 178  Q
    ||||||||| |||| |||||||| |||||||||||| || ||||||||||| ||||||||| |||||||||||    
T  40778766 tccaaaaag-aactatctatcaccaaaatcaaacggtgatgtattcccatggttaaaatccatgccagtagca 40778837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 9 - 135
Target Start/End: Complemental strand, 49619646 - 49619519
Alignment:
Q  9 atcatttcaacttcaacaaaaattacataatcaaac-tttaaatctacaattaacaccacaaccatcatccaaaattgaatcaccaaaacccattaactc 107  Q
    ||||||||||||||||||||||  ||| |||||||| ||||||| || |||||||||||| |||||||| ||||||   |||||||||||||||||||||    
T  49619646 atcatttcaacttcaacaaaaaccacaaaatcaaacatttaaatttagaattaacaccaccaccatcattcaaaatcagatcaccaaaacccattaactc 49619547  T
Q  108 caaaaagaaactttctatcactaaaatc 135  Q
    ||||| |||||||||| |||| ||||||    
T  49619546 caaaacgaaactttctttcaccaaaatc 49619519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 40779044 - 40779084
Alignment:
Q  171 cagtagcagtgctcttgaagtagagacattgttctggaaag 211  Q
    ||||| ||||||||||||| |||||||||||||||||||||    
T  40779044 cagtaacagtgctcttgaaatagagacattgttctggaaag 40779084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 52439115 - 52439074
Alignment:
Q  1 aaaaagttatcatttcaacttcaacaaaaattacataatcaa 42  Q
    ||||| |||||||||||||||||| |||||| ||||||||||    
T  52439115 aaaaatttatcatttcaacttcaataaaaatcacataatcaa 52439074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 40779467 - 40779411
Alignment:
Q  9 atcatttcaacttcaacaaaaattacataatcaaac-tttaaatctacaattaacac 64  Q
    ||||||||||||||||||||||  ||| |||||||| ||||||| || |||||||||    
T  40779467 atcatttcaacttcaacaaaaaccacaaaatcaaacatttaaatttataattaacac 40779411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 7e-34; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 19 - 178
Target Start/End: Original strand, 16497115 - 16497275
Alignment:
Q  19 cttcaacaaaaattacataatcaaac-tttaaatctacaa-ttaacaccacaaccatcatccaaaattgaatcaccaaaacccattaactccaaaaagaa 116  Q
    ||||||||||||  ||| |||||||| ||||||| || || |||||||||| |||||||| |||||| | |||| |||||||||| ||||||||||||||    
T  16497115 cttcaacaaaaaccacaaaatcaaacatttaaatttataaattaacaccaccaccatcattcaaaatcggatcatcaaaacccatcaactccaaaaagaa 16497214  T
Q  117 actttctatcactaaaatcaaacggcgacgtattcccatgattaaaatccttgccagtagca 178  Q
     ||||||||||| |||||||||||| || ||||||||||| ||||||||| |||||||||||    
T  16497215 -ctttctatcaccaaaatcaaacggtgatgtattcccatggttaaaatccatgccagtagca 16497275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 11080853 - 11080778
Alignment:
Q  9 atcatttcaacttcaacaaaaattacataatcaaa-ctttaaatctacaattaacaccacaaccatcatccaaaat 83  Q
    ||||||||||||||||||||||  ||||||||||| |||||||| || |||||||||||| || ||||| ||||||    
T  11080853 atcatttcaacttcaacaaaaaccacataatcaaacctttaaatttataattaacaccaccactatcattcaaaat 11080778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 16497493 - 16497533
Alignment:
Q  171 cagtagcagtgctcttgaagtagagacattgttctggaaag 211  Q
    ||||| || |||||||||| |||||||||||||||||||||    
T  16497493 cagtaacaatgctcttgaaatagagacattgttctggaaag 16497533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2117 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold2117
Description:

Target: scaffold2117; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 9 - 121
Target Start/End: Complemental strand, 345 - 232
Alignment:
Q  9 atcatttcaacttcaacaaaaattacataatcaaact-ttaaatctacaattaacaccacaaccatcatccaaaattgaatcaccaaaacccattaactc 107  Q
    ||||||| ||||| ||||||||  | ||||||||||  ||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||| ||||    
T  345 atcatttaaactttaacaaaaaacaaataatcaaacccttaaatctataattaacaccacaaccatcatccaaaattggatcaccaaaactcattcactc 246  T
Q  108 caaaaagaaacttt 121  Q
    ||||||||||||||    
T  245 caaaaagaaacttt 232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 98334 - 98444
Alignment:
Q  9 atcatttcaacttcaacaaaaattacataatcaaac-tttaaatctacaattaacaccacaaccatcatccaaaattgaatcaccaaaacccattaactc 107  Q
    ||||||||||||||||||||||  ||| ||| |||| ||||||| || |||||||||||| |||||||| |||||| | |||||||||||||||||||||    
T  98334 atcatttcaacttcaacaaaaaccacaaaattaaacatttaaatttataattaacaccaccaccatcattcaaaatcggatcaccaaaacccattaactc 98433  T
Q  108 caaaaagaaac 118  Q
    |||||||||||    
T  98434 caaaaagaaac 98444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 9 - 122
Target Start/End: Complemental strand, 37642360 - 37642246
Alignment:
Q  9 atcatttcaacttcaacaaaaattacataatcaaa-ctttaaatctacaattaacaccacaaccatcatccaaaattgaatcaccaaaacccattaactc 107  Q
    ||||||||||||||||||||||  ||||||||||| |||||||| || ||| |||||||| |||||||| |||||||| |||| ||| ||||||| ||||    
T  37642360 atcatttcaacttcaacaaaaaccacataatcaaacctttaaatttataatcaacaccaccaccatcattcaaaattggatcatcaacacccattcactc 37642261  T
Q  108 caaaaagaaactttc 122  Q
    ||||| |||||||||    
T  37642260 caaaatgaaactttc 37642246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 5547188 - 5547270
Alignment:
Q  9 atcatttcaacttcaacaaaaattacataatcaaa-ctttaaatctacaattaacaccacaaccatcatccaaaattgaatca 90  Q
    ||||||||||||||||||||||  ||||||||||| |||||||| || |||||||||||| |||||||| |||||||| ||||    
T  5547188 atcatttcaacttcaacaaaaaccacataatcaaacctttaaatttataattaacaccaccaccatcattcaaaattggatca 5547270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 9 - 122
Target Start/End: Complemental strand, 5548477 - 5548369
Alignment:
Q  9 atcatttcaacttcaacaaaaattacataatcaaact-ttaaatctacaattaacaccacaaccatcatccaaaattgaatcaccaaaacccattaactc 107  Q
    ||||||| ||||||||||||||| ||||||||||||| | ||| ||| ||||||||||||||| ||||||      || |||||||| | ||||| ||||    
T  5548477 atcattttaacttcaacaaaaatcacataatcaaactctaaaaactataattaacaccacaacaatcatc------tggatcaccaacaaccattcactc 5548384  T
Q  108 caaaaagaaactttc 122  Q
    |||||||||||||||    
T  5548383 caaaaagaaactttc 5548369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 54373830 - 54373766
Alignment:
Q  9 atcatttcaacttcaacaaaaattacataatcaaac-tttaaatctacaattaacaccacaacca 72  Q
    ||||||||||||||||||||||  ||| |||||||| ||||||| || || ||||||||| ||||    
T  54373830 atcatttcaacttcaacaaaaaccacaaaatcaaacatttaaatttataactaacaccaccacca 54373766  T

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Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 9 - 135
Target Start/End: Original strand, 682550 - 682676
Alignment:
Q  9 atcatttcaacttcaacaaaaattacataatcaaa-ctttaaatctacaattaacaccacaaccatcatccaaaattgaatcaccaaaacccattaactc 107  Q
    ||||||||||||||||||||||  ||||||||||| |||||||| || |||||||||||| |||||||| ||||| || ||||| |||| ||  ||||||    
T  682550 atcatttcaacttcaacaaaaaccacataatcaaacctttaaatttataattaacaccaccaccatcattcaaaa-tggatcacgaaaatccgctaactc 682648  T
Q  108 caaaaagaaactttctatcactaaaatc 135  Q
    |||||||||| ||||| |||| ||||||    
T  682649 caaaaagaaattttctctcaccaaaatc 682676  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 21455430 - 21455499
Alignment:
Q  9 atcatttcaacttcaacaaaaattacataatcaaact-ttaaatctacaattaacaccacaaccatcatc 77  Q
    |||||| |||||||||||| || |||||||||||||| ||||||||| |||||||||||| |||||||||    
T  21455430 atcattccaacttcaacaataactacataatcaaactcttaaatctagaattaacaccaccaccatcatc 21455499  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 18498268 - 18498321
Alignment:
Q  9 atcatttcaacttcaacaaaaattacataatcaaa-ctttaaatctacaattaa 61  Q
    ||||||||||||||||||||||  ||||||||||| ||||||||||| ||||||    
T  18498268 atcatttcaacttcaacaaaaaccacataatcaaacctttaaatctagaattaa 18498321  T

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Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 14356731 - 14356842
Alignment:
Q  9 atcatttcaacttcaacaaaaattacataatcaaact-ttaaatctacaattaacaccacaaccatcatccaaaattgaatcaccaaaacccattaactc 107  Q
    ||||||| ||||||||||||||  ||||||||||||| ||||| ||| ||| ||||||||||| ||||||||||||   |||| ||| ||||||| ||||    
T  14356731 atcattttaacttcaacaaaaaccacataatcaaactcttaaaactataatcaacaccacaacaatcatccaaaatcagatcaacaacacccattcactc 14356830  T
Q  108 caaaaagaaact 119  Q
    ||||||||||||    
T  14356831 caaaaagaaact 14356842  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 30915772 - 30915847
Alignment:
Q  9 atcatttcaacttcaacaaaaattacataatcaaa-ctttaaatctacaattaacaccacaaccatcatccaaaat 83  Q
    ||||||||||||||||||||||  ||||||||||| |||||||| || |||||||||||| |||||||| ||||||    
T  30915772 atcatttcaacttcaacaaaaaccacataatcaaacctttaaatttataattaacaccaccaccatcattcaaaat 30915847  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 9 - 136
Target Start/End: Complemental strand, 14357705 - 14357570
Alignment:
Q  9 atcatttcaacttcaacaaaaattacataatcaaac-tttaaatctacaattaacaccacaaccatcatccaaaattgaatca-------ccaaaaccca 100  Q
    ||||||||||||||||||||| | ||| |||||||| ||||||| || |||||||||||  | |||||| ||||||   ||||       ||||||| ||    
T  14357705 atcatttcaacttcaacaaaattcacaaaatcaaacatttaaatttataattaacaccatcaacatcattcaaaatcagatcatcaaagtccaaaactca 14357606  T
Q  101 ttaactccaaaaagaaactttctatcactaaaatca 136  Q
    ||||||||||||||||||||| |||||| |||||||    
T  14357605 ttaactccaaaaagaaactttttatcaccaaaatca 14357570  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 33362407 - 33362349
Alignment:
Q  9 atcatttcaacttcaacaaaaattacataatcaaac-tttaaatctacaattaacaccac 67  Q
    ||||||||||||||||||||||  |||||||||||| ||||||| || ||||||||||||    
T  33362407 atcatttcaacttcaacaaaaaccacataatcaaacctttaaat-tataattaacaccac 33362349  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 30915941 - 30915873
Alignment:
Q  9 atcatttcaacttcaacaaaaattacataatcaaa-ctttaaatctacaattaacaccacaaccatcat 76  Q
    ||||||||||||||||||||||  |||  |||||| |||||||| || |||||||| ||| ||||||||    
T  30915941 atcatttcaacttcaacaaaaaccacaccatcaaacctttaaatttataattaacatcaccaccatcat 30915873  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 12365848 - 12365767
Alignment:
Q  17 aacttcaacaaaaattacataatcaaac-tttaaatctacaattaacaccacaaccatcatccaaaattgaatcaccaaaac 97  Q
    ||||||||||||||  | |||||||||| ||||||| || |||||||||||| |||||||| |||||| | |||||||||||    
T  12365848 aacttcaacaaaaaccatataatcaaacctttaaatttataattaacaccaccaccatcattcaaaatcggatcaccaaaac 12365767  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 20921807 - 20921882
Alignment:
Q  9 atcatttcaacttcaacaaaaattacataatcaaac-tttaaatctacaattaacaccacaaccatcatccaaaat 83  Q
    |||||||||||||  |||||||| ||| | |||||| ||||||| || |||||||||||| |||||||| ||||||    
T  20921807 atcatttcaacttttacaaaaatcacaaagtcaaacatttaaatttataattaacaccaccaccatcattcaaaat 20921882  T

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Target: scaffold0041 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 54944 - 54996
Alignment:
Q  12 atttcaacttcaacaaaaattacataatcaaa-ctttaaatctacaattaaca 63  Q
    |||||||||||||||||||  ||||||||||| ||||||||||| ||||||||    
T  54944 atttcaacttcaacaaaaaccacataatcaaacctttaaatctataattaaca 54996  T

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Target: scaffold0041; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 947 - 913
Alignment:
Q  9 atcatttcaacttcaacaaaaattacataatcaaa 43  Q
    ||||||||||||||||||||||| |||||||||||    
T  947 atcatttcaacttcaacaaaaatcacataatcaaa 913  T

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Target: scaffold0065 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 42
Target Start/End: Original strand, 35647 - 35680
Alignment:
Q  9 atcatttcaacttcaacaaaaattacataatcaa 42  Q
    ||||||||||||||||||||||| ||||||||||    
T  35647 atcatttcaacttcaacaaaaatcacataatcaa 35680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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