View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4264-Insertion-2 (Length: 214)

Name: NF4264-Insertion-2
Description: NF4264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4264-Insertion-2
NF4264-Insertion-2
[»] chr3 (11 HSPs)
chr3 (5-204)||(1638201-1638400)
chr3 (7-109)||(17266977-17267082)
chr3 (41-107)||(17371258-17371324)
chr3 (42-109)||(55390620-55390687)
chr3 (5-109)||(29634610-29634717)
chr3 (21-121)||(50342300-50342403)
chr3 (21-109)||(20409458-20409548)
chr3 (58-99)||(50342193-50342234)
chr3 (164-204)||(4812510-4812550)
chr3 (54-91)||(50342072-50342109)
chr3 (54-94)||(29787946-29787986)
[»] chr8 (6 HSPs)
chr8 (7-203)||(27783862-27784057)
chr8 (5-109)||(32108581-32108688)
chr8 (55-99)||(22843012-22843056)
chr8 (5-109)||(26140564-26140671)
chr8 (5-108)||(12784868-12784974)
chr8 (41-109)||(24629615-24629683)
[»] chr6 (16 HSPs)
chr6 (5-203)||(8711295-8711491)
chr6 (45-203)||(14096084-14096242)
chr6 (5-203)||(5972643-5972827)
chr6 (54-122)||(33200832-33200900)
chr6 (55-158)||(22962079-22962182)
chr6 (55-158)||(23826211-23826314)
chr6 (21-109)||(20244609-20244700)
chr6 (21-109)||(22138593-22138684)
chr6 (21-108)||(24560242-24560332)
chr6 (41-107)||(19243244-19243310)
chr6 (17-122)||(21864573-21864681)
chr6 (54-122)||(21864444-21864512)
chr6 (54-94)||(30764663-30764703)
chr6 (58-106)||(33200580-33200628)
chr6 (5-44)||(2402608-2402647)
chr6 (58-99)||(30764787-30764828)
[»] chr5 (15 HSPs)
chr5 (8-203)||(28718479-28718677)
chr5 (23-122)||(15797839-15797941)
chr5 (16-109)||(31488403-31488499)
chr5 (41-109)||(7575789-7575857)
chr5 (21-122)||(23228364-23228468)
chr5 (5-109)||(34595623-34595731)
chr5 (5-109)||(10976220-10976327)
chr5 (41-109)||(16417790-16417858)
chr5 (54-109)||(11477590-11477645)
chr5 (58-106)||(36311596-36311644)
chr5 (10-109)||(26604293-26604399)
chr5 (21-105)||(22857996-22858083)
chr5 (58-122)||(31238421-31238485)
chr5 (58-104)||(22857868-22857914)
chr5 (57-106)||(37397173-37397222)
[»] chr7 (19 HSPs)
chr7 (5-109)||(27317508-27317615)
chr7 (22-120)||(7413890-7413991)
chr7 (21-107)||(31267504-31267593)
chr7 (41-158)||(1321287-1321403)
chr7 (5-109)||(3925135-3925242)
chr7 (7-109)||(10546079-10546184)
chr7 (7-109)||(26926750-26926855)
chr7 (21-80)||(12309377-12309439)
chr7 (41-109)||(23553833-23553901)
chr7 (58-99)||(7413782-7413823)
chr7 (5-104)||(5282032-5282134)
chr7 (54-109)||(7067122-7067177)
chr7 (54-113)||(41935029-41935088)
chr7 (58-104)||(12083400-12083446)
chr7 (57-106)||(16886192-16886241)
chr7 (23-122)||(28067494-28067596)
chr7 (54-109)||(29656179-29656234)
chr7 (5-46)||(41935111-41935152)
chr7 (58-106)||(28066723-28066771)
[»] chr4 (10 HSPs)
chr4 (7-122)||(25144941-25145059)
chr4 (41-109)||(12227174-12227242)
chr4 (54-114)||(24075680-24075740)
chr4 (58-122)||(20758717-20758781)
chr4 (58-122)||(20765108-20765172)
chr4 (41-109)||(44100939-44101007)
chr4 (56-109)||(20758859-20758912)
chr4 (56-109)||(20765250-20765303)
chr4 (58-104)||(24075555-24075601)
chr4 (41-99)||(35049361-35049419)
[»] chr1 (7 HSPs)
chr1 (19-122)||(21760062-21760168)
chr1 (5-109)||(48706595-48706702)
chr1 (25-155)||(39899544-39899674)
chr1 (54-179)||(27574852-27574977)
chr1 (54-109)||(27800126-27800181)
chr1 (56-109)||(19262100-19262153)
chr1 (7-122)||(11788822-11788940)
[»] chr2 (10 HSPs)
chr2 (3-109)||(11719168-11719277)
chr2 (21-109)||(23282726-23282814)
chr2 (21-109)||(12763966-12764057)
chr2 (25-99)||(18332986-18333063)
chr2 (61-113)||(5305342-5305394)
chr2 (58-122)||(18878974-18879038)
chr2 (54-109)||(18879099-18879154)
chr2 (7-133)||(28276565-28276694)
chr2 (145-200)||(18333110-18333165)
chr2 (58-106)||(27650092-27650140)
[»] scaffold0015 (1 HSPs)
scaffold0015 (5-158)||(22295-22451)
[»] scaffold0121 (1 HSPs)
scaffold0121 (5-109)||(5762-5869)
[»] scaffold0500 (1 HSPs)
scaffold0500 (165-203)||(3246-3284)
[»] scaffold0591 (1 HSPs)
scaffold0591 (164-201)||(2978-3015)


Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 5 - 204
Target Start/End: Complemental strand, 1638400 - 1638201
Alignment:
Q  5 aagatgagtgggacataagggaatgcacctctaagatgttttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgatt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1638400 aagatgagtgggacataagggaatgcacctctaagatgttttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgatt 1638301  T
Q  105 aagttaaaagaaacctctctgaatacatttgtgtttgtcactactcatcttataagtgggaatttgatgggaaaatttgtacaactcattaggtagaata 204  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1638300 aagttaaaagaaacctctctgaatgcatttctgtttgtcactactcatcttataagtgggaatttgatgggaaaatttgtacaactcattagatagaata 1638201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 7 - 109
Target Start/End: Complemental strand, 17267082 - 17266977
Alignment:
Q  7 gatgagtgggacataagggaatgcacctctaagat---gttttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgat 103  Q
    |||||||| ||| |||||||| |||||||||||||   ||||||| ||| ||||||||||||||||||||||||||||| |||||| || |||||| |||    
T  17267082 gatgagtgtgacgtaagggaaagcacctctaagatattgttttgtgcttgatcatgctcctctgtcaattgaaacttgtcagttggaagtgcagtaagat 17266983  T
Q  104 taagtt 109  Q
    ||||||    
T  17266982 taagtt 17266977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 41 - 107
Target Start/End: Original strand, 17371258 - 17371324
Alignment:
Q  41 tgttttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaag 107  Q
    |||||||| ||| ||||||||||| ||||||||||||||||||||||||||| |||||| |||||||    
T  17371258 tgttttgtgcttgatcatgctcctttgtcaattgaaacttgttagttggcagtgcagtaggattaag 17371324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 42 - 109
Target Start/End: Complemental strand, 55390687 - 55390620
Alignment:
Q  42 gttttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagtt 109  Q
    |||| |||||| ||||||||| ||||||||||||||||||| |||||||| ||||||| |||||||||    
T  55390687 gtttcgtacttgatcatgctcatctgtcaattgaaacttgtcagttggcaaggcagtaggattaagtt 55390620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 29634717 - 29634610
Alignment:
Q  5 aagatgagtgggacataagggaatgcacctctaagatgtt---ttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatg 101  Q
    ||||||||||||||| |||||| ||||| |||||||||||   ||||  || |||||| |||| ||||||||||||||||| |||||| | | ||||| |    
T  29634717 aagatgagtgggacaaaagggattgcacttctaagatgttgttttgtgtttgatcatgttcctttgtcaattgaaacttgtcagttggtatgacagtagg 29634618  T
Q  102 attaagtt 109  Q
    ||||||||    
T  29634617 attaagtt 29634610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 121
Target Start/End: Complemental strand, 50342403 - 50342300
Alignment:
Q  21 aagggaatgcacctctaagatgtt---ttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagttaaaagaaa 117  Q
    |||||||||||||||||||| |||   |||  ||| ||||||||||| ||||| ||||||||||| |||||| || | |||| ||||||||| |||| ||    
T  50342403 aagggaatgcacctctaagaggttcttttgagcttgatcatgctcctttgtcatttgaaacttgtcagttggtagcgaagtaagattaagttcaaagcaa 50342304  T
Q  118 cctc 121  Q
    ||||    
T  50342303 cctc 50342300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 109
Target Start/End: Complemental strand, 20409548 - 20409458
Alignment:
Q  21 aagggaatgcacctctaagatgtt--ttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagtt 109  Q
    |||||||||||  |||||||||||  ||||  || ||||||| ||| |||||||| |||||||||||||| ||| |||||| |||||||||    
T  20409548 aagggaatgcatttctaagatgttgtttgtgtttgatcatgcccctttgtcaattaaaacttgttagttgacagagcagtaggattaagtt 20409458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 99
Target Start/End: Complemental strand, 50342234 - 50342193
Alignment:
Q  58 tgctcctctgtcaattgaaacttgttagttggcagggcagta 99  Q
    ||||||||||||||||||||||||| |||||||| |||||||    
T  50342234 tgctcctctgtcaattgaaacttgtcagttggcatggcagta 50342193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 4812550 - 4812510
Alignment:
Q  164 gaatttgatgggaaaatttgtacaactcattaggtagaata 204  Q
    |||||||||| ||||||||||||||||| ||||||||||||    
T  4812550 gaatttgatgtgaaaatttgtacaactctttaggtagaata 4812510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 91
Target Start/End: Complemental strand, 50342109 - 50342072
Alignment:
Q  54 atcatgctcctctgtcaattgaaacttgttagttggca 91  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  50342109 atcatgctcctctatcaattgaaacttgtcagttggca 50342072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 94
Target Start/End: Complemental strand, 29787986 - 29787946
Alignment:
Q  54 atcatgctcctctgtcaattgaaacttgttagttggcaggg 94  Q
    ||||||||||| ||||||||||||||||| |||||| ||||    
T  29787986 atcatgctcctatgtcaattgaaacttgtcagttggtaggg 29787946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 5e-55; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 7 - 203
Target Start/End: Original strand, 27783862 - 27784057
Alignment:
Q  7 gatgagtgggacataagggaatgcacctctaagatgttttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaa 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||| |||||||||| ||||| ||||||    
T  27783862 gatgagtgggacataagggaatgcacctctaagatgttttgtacttgatcataatcctctgtcaattgaaacttgtcagttggcaggtcagtaagattaa 27783961  T
Q  107 gttaaaagaaacctctctgaatacatttgtgtttgtcactactcatcttataagtgggaatttgatgggaaaatttgtacaactcattaggtagaat 203  Q
    ||| ||   || ||||  |||| ||||  ||||| ||||||||||||||||| | || ||||||||||| |||||||||||||||||||||||||||    
T  27783962 gttcaagacaaactcttggaatgcattcatgtttatcactactcatcttatatgaggaaatttgatggg-aaatttgtacaactcattaggtagaat 27784057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 32108688 - 32108581
Alignment:
Q  5 aagatgagtgggacataagggaatgcacctctaaga---tgttttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatg 101  Q
    |||||||||| |||| | | |||||||  |||||||   |||||||  ||| ||||||||||||||||||||||||||||| ||||| |||||||||| |    
T  32108688 aagatgagtgtgacaaacgagaatgcatttctaagacgttgttttgagcttgatcatgctcctctgtcaattgaaacttgtcagttgccagggcagtagg 32108589  T
Q  102 attaagtt 109  Q
    ||||||||    
T  32108588 attaagtt 32108581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 22843056 - 22843012
Alignment:
Q  55 tcatgctcctctgtcaattgaaacttgttagttggcagggcagta 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  22843056 tcatgctcctctgtcaattgaaacttgttagttggcagggcagta 22843012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 109
Target Start/End: Original strand, 26140564 - 26140671
Alignment:
Q  5 aagatgagtgggacataagggaatgcacctctaagatgtt---ttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatg 101  Q
    |||||||||| ||| ||||||||| |||||||||||||||   |||| ||| || |||||||||| | ||||||||| ||| |||| |||| ||| ||||    
T  26140564 aagatgagtgtgacgtaagggaatacacctctaagatgttgttttgtgcttgataatgctcctctattaattgaaacatgtcagtttgcagtgcaatatg 26140663  T
Q  102 attaagtt 109  Q
    ||||||||    
T  26140664 attaagtt 26140671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 108
Target Start/End: Complemental strand, 12784974 - 12784868
Alignment:
Q  5 aagatgagtgggacataagggaatgcacctctaagatgtt---ttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatg 101  Q
    |||||||||| |||| | |||||||||  |||||||||||   |||  ||| ||||||||||| ||| ||||||||||||| |||||||||  |||||||    
T  12784974 aagatgagtgtgacaaacgggaatgcatttctaagatgttgttttgagcttgatcatgctcctttgttaattgaaacttgtcagttggcagaccagtatg 12784875  T
Q  102 attaagt 108  Q
    |||||||    
T  12784874 attaagt 12784868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 24629683 - 24629615
Alignment:
Q  41 tgttttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagtt 109  Q
    ||||||||  || ||||||||||||||||||||||||||||| |||| | || |||||| |||||||||    
T  24629683 tgttttgtgtttgatcatgctcctctgtcaattgaaacttgtcagttagtagtgcagtaagattaagtt 24629615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 4e-40; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 5 - 203
Target Start/End: Original strand, 8711295 - 8711491
Alignment:
Q  5 aagatgagtgggacataagggaatgcacctctaagat---gttttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatg 101  Q
    |||||||||| |||||||||||||| |||||||||||   ||||||||||| |||||||||||||||||||||||| |||| ||||| |||||||||| |    
T  8711295 aagatgagtgtgacataagggaatgtacctctaagatattgttttgtacttgatcatgctcctctgtcaattgaaatttgtcagttgacagggcagtaag 8711394  T
Q  102 attaagttaaaagaaacctctctgaatacatttgtgtttgtcactactcatcttataagtgggaatttgatgggaaaatttgtacaactcattaggtaga 201  Q
    |||||||| |||  ||||| |  |||| ||||  |||||||||||||||     ||| | | ||||||||||||||||||| ||||||||||| ||||||    
T  8711395 attaagttcaaaacaaccttttggaatgcattcttgtttgtcactactc-----atatgagagaatttgatgggaaaatttatacaactcatttggtaga 8711489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 45 - 203
Target Start/End: Original strand, 14096084 - 14096242
Alignment:
Q  45 ttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagttaaaagaaacctctctgaatacatttgtgtttgtca 144  Q
    |||||||| |||||||| |||| ||||||||||||||| ||||||| |||||||| |||||| || |||  |||||||  |||| ||||  |||||||||    
T  14096084 ttgtacttgatcatgcttctctttcaattgaaacttgtcagttggctgggcagtaagattaaattcaaaacaacctcttggaatgcattcatgtttgtca 14096183  T
Q  145 ctactcatcttataagtgggaatttgatgggaaaatttgtacaactcattaggtagaat 203  Q
    |||||||||| |||   | |||||||||| |||||||| |||| |||||||||||||||    
T  14096184 ctactcatctaatattagtgaatttgatgtgaaaatttatacagctcattaggtagaat 14096242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 203
Target Start/End: Complemental strand, 5972827 - 5972643
Alignment:
Q  5 aagatgagtgggacataagggaatgcacctctaaga---tgttttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatg 101  Q
    |||||||||| |||||||||||||||||||||||||   |||||||||||| ||||||||| |||||||||||||| ||||            ||||| |    
T  5972827 aagatgagtgtgacataagggaatgcacctctaagatattgttttgtacttgatcatgctcttctgtcaattgaaatttgt------------cagtaag 5972740  T
Q  102 attaagttaaaagaaacctctctgaatacatttgtgtttgtcactactcatcttataagtgggaatttgatgggaaaatttgtacaactcattaggtaga 201  Q
    |||||||| |||  |||||||  |||| ||||  |||||||||||||||     ||| | |||||||||||||||||||||||||||||||||  |||||    
T  5972739 attaagttcaaaacaacctcttggaatgcattcttgtttgtcactactc-----atatgagggaatttgatgggaaaatttgtacaactcattttgtaga 5972645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 54 - 122
Target Start/End: Original strand, 33200832 - 33200900
Alignment:
Q  54 atcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagttaaaagaaacctct 122  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||| |||| |||||||    
T  33200832 atcatactcctctgtcaattgaaacttgtcagttggcagggcagtaagattaagttcaaagcaacctct 33200900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 55 - 158
Target Start/End: Complemental strand, 22962182 - 22962079
Alignment:
Q  55 tcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagttaaaagaaacctctctgaatacatttgtgtttgtcactactcatct 154  Q
    |||| ||||||| | |||||||||||||||||||||||||||||| ||||||||| ||| |||  | |  |||  |||| ||||||||||||||||||||    
T  22962182 tcatactcctctattaattgaaacttgttagttggcagggcagtaggattaagttcaaaaaaatatattggaaagcattcgtgtttgtcactactcatct 22962083  T
Q  155 tata 158  Q
    ||||    
T  22962082 tata 22962079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 55 - 158
Target Start/End: Original strand, 23826211 - 23826314
Alignment:
Q  55 tcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagttaaaagaaacctctctgaatacatttgtgtttgtcactactcatct 154  Q
    |||| ||||||| | |||||||||||||||||||||||||||||| ||||||||| ||| |||  | |  |||  |||| ||||||||||||||||||||    
T  23826211 tcatactcctctattaattgaaacttgttagttggcagggcagtaggattaagttcaaaaaaatatattggaaagcattcgtgtttgtcactactcatct 23826310  T
Q  155 tata 158  Q
    ||||    
T  23826311 tata 23826314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 109
Target Start/End: Original strand, 20244609 - 20244700
Alignment:
Q  21 aagggaatgcacctctaagat---gttttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagtt 109  Q
    ||||||||||| |||||||||   ||||||| ||| ||||||||||||||||||||||||||||| | |||||||||  ||| |||||||||    
T  20244609 aagggaatgcaactctaagattttgttttgtgcttgatcatgctcctctgtcaattgaaacttgtcaattggcagggttgtaggattaagtt 20244700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 109
Target Start/End: Original strand, 22138593 - 22138684
Alignment:
Q  21 aagggaatgcacctctaagat---gttttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagtt 109  Q
    ||||||||||| |||||||||   ||||||| ||| ||||||||||||||||||||||||||||| | |||||||||  ||| |||||||||    
T  22138593 aagggaatgcaactctaagattttgttttgtgcttgatcatgctcctctgtcaattgaaacttgtcaattggcagggttgtaggattaagtt 22138684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 21 - 108
Target Start/End: Original strand, 24560242 - 24560332
Alignment:
Q  21 aagggaatgcacctctaagatgtt---ttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagt 108  Q
    |||||||||||| |||||| ||||   ||||  || |||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||    
T  24560242 aagggaatgcacttctaaggtgttgttttgtgtttgatcatgctccgctgtcaattgaaacttgttagttggtagggcagtaagattaagt 24560332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 107
Target Start/End: Original strand, 19243244 - 19243310
Alignment:
Q  41 tgttttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaag 107  Q
    |||||||| ||| ||||||||| ||||||||||||||||||| | |||||||||||||| |||||||    
T  19243244 tgttttgtgcttgatcatgctcatctgtcaattgaaacttgtcaattggcagggcagtaggattaag 19243310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 122
Target Start/End: Complemental strand, 21864681 - 21864573
Alignment:
Q  17 acataagggaatgcacctctaagatgtt---ttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagttaaaa 113  Q
    ||||||||||| ||||||||||||||||   ||||| |  ||| ||||| ||||||||||||||| ||| ||||||||| |||||| |||| | || |||    
T  21864681 acataagggaaagcacctctaagatgttcctttgtattagatcgtgctcttctgtcaattgaaacatgtcagttggcagagcagtaagattcaatttaaa 21864582  T
Q  114 gaaacctct 122  Q
    |||||||||    
T  21864581 gaaacctct 21864573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 122
Target Start/End: Complemental strand, 21864512 - 21864444
Alignment:
Q  54 atcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagttaaaagaaacctct 122  Q
    ||||||| ||||| ||||||||||||||| |||||| ||||||||| ||||||||| || | |||||||    
T  21864512 atcatgcacctctctcaattgaaacttgtcagttggtagggcagtaagattaagttcaacgcaacctct 21864444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 94
Target Start/End: Complemental strand, 30764703 - 30764663
Alignment:
Q  54 atcatgctcctctgtcaattgaaacttgttagttggcaggg 94  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  30764703 atcatgctcctctgtcaattgaaacttgtcagttggtaggg 30764663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 106
Target Start/End: Original strand, 33200580 - 33200628
Alignment:
Q  58 tgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaa 106  Q
    ||||||||||||||||||||||||| |||||||| |||| || ||||||    
T  33200580 tgctcctctgtcaattgaaacttgtcagttggcatggcaataagattaa 33200628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 2402608 - 2402647
Alignment:
Q  5 aagatgagtgggacataagggaatgcacctctaagatgtt 44  Q
    |||||||||| ||| |||||||||||||||||||||||||    
T  2402608 aagatgagtgagacgtaagggaatgcacctctaagatgtt 2402647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 58 - 99
Target Start/End: Complemental strand, 30764828 - 30764787
Alignment:
Q  58 tgctcctctgtcaattgaaacttgttagttggcagggcagta 99  Q
    ||||||||| ||||||||||||||| | ||||||||||||||    
T  30764828 tgctcctctatcaattgaaacttgtcaattggcagggcagta 30764787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 8 - 203
Target Start/End: Original strand, 28718479 - 28718677
Alignment:
Q  8 atgagtgggacataagggaatgcacctctaagatgtt---ttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgatt 104  Q
    |||||||||||||||||||||||||||||||||||||   || ||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  28718479 atgagtgggacataagggaatgcacctctaagatgttgttttatacttgatcatgctcctctgtcaattgaaacttgtcagttggcagggcagtaagatt 28718578  T
Q  105 aagttaaaagaaacctctctgaatacatttgtgtttgtcactactcatcttataagtgggaatttgatgggaaaatttgtacaactcattaggtagaat 203  Q
     | || |||| || ||||   ||| ||||  | |   |   ||||||| ||||| |  ||||||| ||||||||||||| |||||||||||||||||||    
T  28718579 caattcaaagcaatctcttgaaattcattcctttacattcttactcattttatatgaaggaatttaatgggaaaatttgcacaactcattaggtagaat 28718677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 23 - 122
Target Start/End: Complemental strand, 15797941 - 15797839
Alignment:
Q  23 gggaatgcacctctaagatgtt---ttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagttaaaagaaacc 119  Q
    |||||||||||||||||| |||   ||| |||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||| ||||    
T  15797941 gggaatgcacctctaagaggttcctttgaacttgatcatgctcctctgtcaattgaaacttgtcagttggcagggcagtaagattaagttcaaagcaacc 15797842  T
Q  120 tct 122  Q
    |||    
T  15797841 tct 15797839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 31488403 - 31488499
Alignment:
Q  16 gacataagggaatgcacctctaagatgtt---ttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagtt 109  Q
    ||||||||||| |||||||||||||||||   |||| ||| |||||||| |||||||||||||||||||||||||||||| |||||| |||||||||    
T  31488403 gacataagggagtgcacctctaagatgttgttttgtgcttgatcatgcttctctgtcaattgaaacttgttagttggcagtgcagtaggattaagtt 31488499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 7575857 - 7575789
Alignment:
Q  41 tgttttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagtt 109  Q
    |||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  7575857 tgttttgtgcttgatcatgctcctctgtcaattgaaacttgtcagttggcagggcagtatgattaagtt 7575789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 21 - 122
Target Start/End: Complemental strand, 23228468 - 23228364
Alignment:
Q  21 aagggaatgcacctctaagatgtt---ttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagttaaaagaaa 117  Q
    |||||||||||||||||||| |||   |||  ||| ||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||| |||| ||    
T  23228468 aagggaatgcacctctaagaggttcttttgagcttgatcatgctcctctgtcaattgaaacttgtgagttggtagggcagtaagattaagttcaaagcaa 23228369  T
Q  118 cctct 122  Q
    |||||    
T  23228368 cctct 23228364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 109
Target Start/End: Original strand, 34595623 - 34595731
Alignment:
Q  5 aagatgagtgggacataagggaatgcacctctaagatgtt---ttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggc-agtat 100  Q
    |||||||||| |||  ||||||||||||||||||||||||   |||| ||| ||||||||||| ||||||||||||||||| ||||||||  || |||||    
T  34595623 aagatgagtgtgacgaaagggaatgcacctctaagatgttgttttgtgcttgatcatgctcctttgtcaattgaaacttgtcagttggcaatgcaagtat 34595722  T
Q  101 gattaagtt 109  Q
    |||||||||    
T  34595723 gattaagtt 34595731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 109
Target Start/End: Original strand, 10976220 - 10976327
Alignment:
Q  5 aagatgagtgggacataagggaatgcacctctaagatgtt---ttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatg 101  Q
    |||||||||| |||  |||| |||| ||||||||||||||   |||| ||| ||||||||| | ||||||||||||||||||||||||||| ||||||      
T  10976220 aagatgagtgtgacgaaaggaaatgtacctctaagatgttattttgtgcttgatcatgctcatatgtcaattgaaacttgttagttggcagtgcagtaga 10976319  T
Q  102 attaagtt 109  Q
    ||||||||    
T  10976320 attaagtt 10976327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 16417858 - 16417790
Alignment:
Q  41 tgttttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagtt 109  Q
    |||||||| ||| ||||||||||||||||||||||||||||| ||||||||| |||||| | |||||||    
T  16417858 tgttttgtgcttgatcatgctcctctgtcaattgaaacttgtcagttggcagagcagtaggcttaagtt 16417790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 54 - 109
Target Start/End: Complemental strand, 11477645 - 11477590
Alignment:
Q  54 atcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagtt 109  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||    
T  11477645 atcatgctcctctgtcaattgaaacttgttagttggcagagcagtagaattaagtt 11477590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 36311644 - 36311596
Alignment:
Q  58 tgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaa 106  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  36311644 tgctcctctgtcaattgaaacttgtcagttggcagggcagtaagattaa 36311596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 109
Target Start/End: Complemental strand, 26604399 - 26604293
Alignment:
Q  10 gagtgggacataagggaatgcacctctaagatgtt---ttgtacttcatcatgctcct----ctgtcaattgaaacttgttagttggcagggcagtatga 102  Q
    ||||||||||||||| ||||||  |||||||||||   |||  ||  |||||||||||    |||||||||||||||||| ||||||||| ||| |||||    
T  26604399 gagtgggacataaggcaatgcatttctaagatgttgttttgagctggatcatgctcctagatctgtcaattgaaacttgtcagttggcagagcaatatga 26604300  T
Q  103 ttaagtt 109  Q
    |||||||    
T  26604299 ttaagtt 26604293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 105
Target Start/End: Complemental strand, 22858083 - 22857996
Alignment:
Q  21 aagggaatgcacctctaagatgt---tttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgatta 105  Q
    |||||||||||||||||||| ||   ||||   || ||| |||||||||||||| |||||||||| |||||||| ||||||| |||||    
T  22858083 aagggaatgcacctctaagaggtgcctttgagtttgatcgtgctcctctgtcaactgaaacttgtcagttggcaaggcagtaagatta 22857996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 122
Target Start/End: Original strand, 31238421 - 31238485
Alignment:
Q  58 tgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagttaaaagaaacctct 122  Q
    ||||||| ||||||||||||||||| |||||| |||||| || ||||||  |||||| |||||||    
T  31238421 tgctcctttgtcaattgaaacttgtcagttgggagggcaataagattaaactaaaagcaacctct 31238485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 104
Target Start/End: Complemental strand, 22857914 - 22857868
Alignment:
Q  58 tgctcctctgtcaattgaaacttgttagttggcagggcagtatgatt 104  Q
    ||||||| ||||||||| ||||||| |||||||||||||||| ||||    
T  22857914 tgctcctttgtcaattgcaacttgtcagttggcagggcagtaagatt 22857868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 37397173 - 37397222
Alignment:
Q  57 atgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaa 106  Q
    |||||| ||||| ||||||||||||| ||||| || ||||||||||||||    
T  37397173 atgctcatctgttaattgaaacttgtcagttgacatggcagtatgattaa 37397222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 27317615 - 27317508
Alignment:
Q  5 aagatgagtgggacataagggaatgcacctctaagatgtt---ttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatg 101  Q
    ||||||||||||||||||||||||||||||||||||||||   |||| ||| | ||||||||||||||||||||||||||| ||||||||||| |||| |    
T  27317615 aagatgagtgggacataagggaatgcacctctaagatgttgttttgtgcttgaacatgctcctctgtcaattgaaacttgtcagttggcagggtagtagg 27317516  T
Q  102 attaagtt 109  Q
    ||||||||    
T  27317515 attaagtt 27317508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 22 - 120
Target Start/End: Complemental strand, 7413991 - 7413890
Alignment:
Q  22 agggaatgcacctctaagatgtt---ttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagttaaaagaaac 118  Q
    |||||||||||||||||||||||   |||  ||| ||||||||||||||||||||||||||||| ||||||||||||| || ||||||||| |||| |||    
T  7413991 agggaatgcacctctaagatgttattttgagcttgatcatgctcctctgtcaattgaaacttgtaagttggcagggcaataagattaagttcaaagcaac 7413892  T
Q  119 ct 120  Q
    ||    
T  7413891 ct 7413890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 21 - 107
Target Start/End: Original strand, 31267504 - 31267593
Alignment:
Q  21 aagggaatgcacctctaagatgtt---ttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaag 107  Q
    |||||||||||||||||||| |||   |||  ||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  31267504 aagggaatgcacctctaagaggttcttttgagcttgatcatgctcctctgtcaattgaaacttgttagttggcaggacagtaagattaag 31267593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 41 - 158
Target Start/End: Complemental strand, 1321403 - 1321287
Alignment:
Q  41 tgttttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagttaaaagaaacctctctgaatacatttgtgttt 140  Q
    |||||||  ||| ||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||| |||  ||  | |  |||| |||||||||||    
T  1321403 tgttttgagcttgatcatgctcctctgtcaattgaaacttgtcagttggtagggcagtaggattaagttcaaaagaatatattggaatgcatttgtgttt 1321304  T
Q  141 gtcactactcatcttata 158  Q
    ||||| ||||||||||||    
T  1321303 gtcac-actcatcttata 1321287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 5 - 109
Target Start/End: Original strand, 3925135 - 3925242
Alignment:
Q  5 aagatgagtgggacataagggaatgcacctctaagatg---ttttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatg 101  Q
    |||||||||||||| ||||||| |||||||||||||||   |||||| ||| |||||| || | ||||||||||||||||||||||||||  || ||| |    
T  3925135 aagatgagtgggacgtaagggattgcacctctaagatgttattttgtgcttgatcatgttcttatgtcaattgaaacttgttagttggcaatgcggtagg 3925234  T
Q  102 attaagtt 109  Q
    ||||||||    
T  3925235 attaagtt 3925242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 7 - 109
Target Start/End: Original strand, 10546079 - 10546184
Alignment:
Q  7 gatgagtgggacataagggaatgcacctctaagatgtt---ttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgat 103  Q
    |||||||  ||| |||||||||||||||||||||||||   |||| | | ||||||||||||||||||||||||||||| ||||||||  ||||||  ||    
T  10546079 gatgagtatgacttaagggaatgcacctctaagatgttgttttgtgcatgatcatgctcctctgtcaattgaaacttgtcagttggcattgcagtaaaat 10546178  T
Q  104 taagtt 109  Q
    ||||||    
T  10546179 taagtt 10546184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 7 - 109
Target Start/End: Complemental strand, 26926855 - 26926750
Alignment:
Q  7 gatgagtgggacataagggaatgcacctctaagatgtt---ttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgat 103  Q
    ||||||||  ||||| |||||||||| |||||||||||   |||  |||  |||||||||||||||||||||||||||| |||||||| | ||||| |||    
T  26926855 gatgagtgtcacatatgggaatgcacttctaagatgttgttttgagcttgctcatgctcctctgtcaattgaaacttgtcagttggcatgacagtaggat 26926756  T
Q  104 taagtt 109  Q
    ||||||    
T  26926755 taagtt 26926750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 12309439 - 12309377
Alignment:
Q  21 aagggaatgcacctctaagatgtt---ttgtacttcatcatgctcctctgtcaattgaaactt 80  Q
    ||||||||||||||||||||||||   |||| ||| |||||||||||||||||||||||||||    
T  12309439 aagggaatgcacctctaagatgttgttttgtgcttgatcatgctcctctgtcaattgaaactt 12309377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 23553833 - 23553901
Alignment:
Q  41 tgttttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagtt 109  Q
    |||||||| ||| ||||| ||||||||||||| ||||||||| ||||||||| ||| ||||||||||||    
T  23553833 tgttttgtgcttgatcatactcctctgtcaatagaaacttgtcagttggcagtgcaatatgattaagtt 23553901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 99
Target Start/End: Complemental strand, 7413823 - 7413782
Alignment:
Q  58 tgctcctctgtcaattgaaacttgttagttggcagggcagta 99  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  7413823 tgctcctctgtcaattgaaacttgtcagttggcagggcagta 7413782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 5282134 - 5282032
Alignment:
Q  5 aagatgagtgggacataagggaatgcacctctaa---gatgttttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatg 101  Q
    ||||||||||  |||||| |||||||||||||||   | | ||||| | |  ||| |||||||||||||||||||||| || |||||||||||||||| |    
T  5282134 aagatgagtgtcacataaaggaatgcacctctaatgggttattttgaattagatcgtgctcctctgtcaattgaaactagtcagttggcagggcagtaag 5282035  T
Q  102 att 104  Q
    |||    
T  5282034 att 5282032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 109
Target Start/End: Original strand, 7067122 - 7067177
Alignment:
Q  54 atcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagtt 109  Q
    ||||||||||||||||||||||||||||| ||||||||| ||| ||  ||||||||    
T  7067122 atcatgctcctctgtcaattgaaacttgtcagttggcagtgcaatagaattaagtt 7067177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 113
Target Start/End: Complemental strand, 41935088 - 41935029
Alignment:
Q  54 atcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagttaaaa 113  Q
    ||||||||  ||||||||||||||||||| ||||||||| ||||||  ||||||||||||    
T  41935088 atcatgcttttctgtcaattgaaacttgtcagttggcagtgcagtagaattaagttaaaa 41935029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 58 - 104
Target Start/End: Original strand, 12083400 - 12083446
Alignment:
Q  58 tgctcctctgtcaattgaaacttgttagttggcagggcagtatgatt 104  Q
    |||||||||||||||||||||| || |||||||||||||||| ||||    
T  12083400 tgctcctctgtcaattgaaactagtcagttggcagggcagtaagatt 12083446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 16886241 - 16886192
Alignment:
Q  57 atgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaa 106  Q
    |||||||||||||||||||||||||| |||||| ||| || |||||||||    
T  16886241 atgctcctctgtcaattgaaacttgtcagttggtaggacaatatgattaa 16886192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 122
Target Start/End: Original strand, 28067494 - 28067596
Alignment:
Q  23 gggaatgcacctctaagatgttt---tgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagttaaaagaaacc 119  Q
    |||||||||||||||||| ||||   || |||  ||| ||||| ||||||||||||| ||||| ||||||||| |||||| |||| || | |||| ||||    
T  28067494 gggaatgcacctctaagaggtttctttgaactagatcgtgctcatctgtcaattgaatcttgtcagttggcagtgcagtaagattcagcttaaagcaacc 28067593  T
Q  120 tct 122  Q
    |||    
T  28067594 tct 28067596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 109
Target Start/End: Complemental strand, 29656234 - 29656179
Alignment:
Q  54 atcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagtt 109  Q
    |||| ||||| |||||||||||||||||| ||||||||||| | || |||||||||    
T  29656234 atcaagctcccctgtcaattgaaacttgtcagttggcagggaaataagattaagtt 29656179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 41935152 - 41935111
Alignment:
Q  5 aagatgagtgggacataagggaatgcacctctaagatgtttt 46  Q
    |||||||||| ||  |||||||||||||||||||||||||||    
T  41935152 aagatgagtgagatgtaagggaatgcacctctaagatgtttt 41935111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 106
Target Start/End: Original strand, 28066723 - 28066771
Alignment:
Q  58 tgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaa 106  Q
    |||||||||||||||||||||| || |||||  ||||||||| ||||||    
T  28066723 tgctcctctgtcaattgaaactagtcagttgctagggcagtaagattaa 28066771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 25144941 - 25145059
Alignment:
Q  7 gatgagtgggacataagggaatgcacctctaagatgtt---ttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgat 103  Q
    ||||||||  ||| |||||||||||||||||||| |||   |||  ||| |||||||||||||||||||||||||||||||||||||||||||||| |||    
T  25144941 gatgagtgtcacagaagggaatgcacctctaagaagttcttttgagcttgatcatgctcctctgtcaattgaaacttgttagttggcagggcagtaagat 25145040  T
Q  104 taagttaaaagaaacctct 122  Q
    ||| || |||| |||||||    
T  25145041 taacttcaaagtaacctct 25145059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 12227242 - 12227174
Alignment:
Q  41 tgttttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagtt 109  Q
    |||||||| ||| |||||| |||| ||||||||||||||||| ||||||||||||| ||||||||||||    
T  12227242 tgttttgtgcttgatcatgttcctgtgtcaattgaaacttgtcagttggcagggcactatgattaagtt 12227174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 24075680 - 24075740
Alignment:
Q  54 atcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagttaaaag 114  Q
    ||||||||||| ||||||||||||||||| ||||||||| |||||| ||||||||| ||||    
T  24075680 atcatgctcctatgtcaattgaaacttgtcagttggcagagcagtaagattaagttcaaag 24075740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 122
Target Start/End: Complemental strand, 20758781 - 20758717
Alignment:
Q  58 tgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagttaaaagaaacctct 122  Q
    |||||||||||||||||| |||||||||||||||||| |||| |||| | || |||| |||||||    
T  20758781 tgctcctctgtcaattgagacttgttagttggcagggtagtaagattcaattcaaagcaacctct 20758717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 122
Target Start/End: Complemental strand, 20765172 - 20765108
Alignment:
Q  58 tgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagttaaaagaaacctct 122  Q
    |||||||||||||||||| |||||||||||||||||| |||| |||| | || |||| |||||||    
T  20765172 tgctcctctgtcaattgagacttgttagttggcagggtagtaagattcaattcaaagcaacctct 20765108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 44100939 - 44101007
Alignment:
Q  41 tgttttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagtt 109  Q
    ||||||||  || ||||||||||||| ||||||||||||||| |||||||| || |||| |||||||||    
T  44100939 tgttttgtgtttgatcatgctcctctatcaattgaaacttgtcagttggcaaggtagtaagattaagtt 44101007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 20758912 - 20758859
Alignment:
Q  56 catgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagtt 109  Q
    ||||||||||| |||||||||| |||| |||||||||| ||||| |||||||||    
T  20758912 catgctcctctttcaattgaaatttgtcagttggcaggacagtaagattaagtt 20758859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 20765303 - 20765250
Alignment:
Q  56 catgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagtt 109  Q
    ||||||||||| |||||||||| |||| |||||||||| ||||| |||||||||    
T  20765303 catgctcctctttcaattgaaatttgtcagttggcaggacagtaagattaagtt 20765250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 104
Target Start/End: Original strand, 24075555 - 24075601
Alignment:
Q  58 tgctcctctgtcaattgaaacttgttagttggcagggcagtatgatt 104  Q
    ||||||||| ||||||||||||||| |||||||||| ||||| ||||    
T  24075555 tgctcctctatcaattgaaacttgtcagttggcaggacagtaagatt 24075601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 99
Target Start/End: Complemental strand, 35049419 - 35049361
Alignment:
Q  41 tgttttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagta 99  Q
    |||||||  ||| ||||||||||| ||||||||||||| ||| ||||||||| ||||||    
T  35049419 tgttttgagcttgatcatgctcctatgtcaattgaaacatgtcagttggcagagcagta 35049361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 2e-26; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 21760168 - 21760062
Alignment:
Q  19 ataagggaatgcacctctaagatgtt---ttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagttaaaaga 115  Q
    ||||||||||||||||||||||||||   |||||||| ||||||| ||||||||||||||||||||| ||||||||||||| || ||||||||| |||      
T  21760168 ataagggaatgcacctctaagatgttgttttgtacttgatcatgcccctctgtcaattgaaacttgtcagttggcagggcaataagattaagttcaaatc 21760069  T
Q  116 aacctct 122  Q
    |||||||    
T  21760068 aacctct 21760062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 48706702 - 48706595
Alignment:
Q  5 aagatgagtgggacataagggaatgcacctctaagatgtt---ttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatg 101  Q
    |||||||||| ||| ||||||||||||| |||||||||||   |||| ||| ||||||||||||| ||||||||||||||||||||||||| |||||| |    
T  48706702 aagatgagtgagacgtaagggaatgcacatctaagatgttgttttgtgcttaatcatgctcctctatcaattgaaacttgttagttggcagtgcagtagg 48706603  T
Q  102 attaagtt 109  Q
    | ||||||    
T  48706602 agtaagtt 48706595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 25 - 155
Target Start/End: Complemental strand, 39899674 - 39899544
Alignment:
Q  25 gaatgcacctctaagatgttttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagttaaaagaaacctctct 124  Q
    ||||||| ||||||||||||||  |||| || ||||| ||||||||||||||||||||||||||||| | || |||||||||||| |||  ||  | |      
T  39899674 gaatgcatctctaagatgtttttaacttgatgatgcttctctgtcaattgaaacttgttagttggcatgacaatatgattaagttcaaaagaatatatta 39899575  T
Q  125 gaatacatttgtgtttgtcactactcatctt 155  Q
    ||||||||| |||||||||| ||||||||||    
T  39899574 gaatacattcgtgtttgtcattactcatctt 39899544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 27574977 - 27574852
Alignment:
Q  54 atcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagttaaaagaaacctctctgaatacatttgtgtttgtcactactcatc 153  Q
    ||||||||||||||||| |||||| |||| ||||||||||| |||| ||||||||| |||| |||||||  |||||||||| | | ||| |  |||||||    
T  27574977 atcatgctcctctgtcatttgaaagttgtcagttggcaggggagtaagattaagttcaaagcaacctcttggaatacatttctttatgtgatgactcatc 27574878  T
Q  154 ttataagtgggaatttgatgggaaaa 179  Q
    ||||| | | ||||| |||| |||||    
T  27574877 ttatatgagagaattcgatgtgaaaa 27574852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 54 - 109
Target Start/End: Original strand, 27800126 - 27800181
Alignment:
Q  54 atcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagtt 109  Q
    |||||| |||||||||||||||||||||| ||||||||||| ||||||||| ||||    
T  27800126 atcatgttcctctgtcaattgaaacttgtcagttggcagggaagtatgattgagtt 27800181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 19262153 - 19262100
Alignment:
Q  56 catgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagtt 109  Q
    ||||||||||||| ||||||||||||| |||| |  |||||||| |||||||||    
T  19262153 catgctcctctgttaattgaaacttgtcagtttgtcgggcagtaggattaagtt 19262100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 122
Target Start/End: Complemental strand, 11788940 - 11788822
Alignment:
Q  7 gatgagtgggacataagggaatgcacctctaagatgtt---ttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgat 103  Q
    ||||||||  ||| ||| |||||||||||||||| |||   |||  ||| || ||||||||| |||||||||||||| | | |||||| |||||||  ||    
T  11788940 gatgagtgtaacagaagagaatgcacctctaagaggttcttttgagcttgattatgctcctccgtcaattgaaacttatcatttggcaaggcagtaaaat 11788841  T
Q  104 taagttaaaagaaacctct 122  Q
    |||||| |||  |||||||    
T  11788840 taagttcaaaacaacctct 11788822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 109
Target Start/End: Original strand, 11719168 - 11719277
Alignment:
Q  3 acaagatgagtgggacataagggaatgcacctctaagatgtt---ttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagta 99  Q
    |||||||||||||||| ||| |||||||||||||||||||||   || | ||| |||||||| |||||||||||||||||||| ||||||||| ||||||    
T  11719168 acaagatgagtgggacgtaaaggaatgcacctctaagatgttattttatgcttgatcatgcttctctgtcaattgaaacttgtcagttggcagtgcagta 11719267  T
Q  100 tgattaagtt 109  Q
      ||||||||    
T  11719268 gtattaagtt 11719277  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 21 - 109
Target Start/End: Original strand, 23282726 - 23282814
Alignment:
Q  21 aagggaatgcacctctaagatgttttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagtt 109  Q
    |||||||||||| |||||||||||||||  || |||||||||| |||||||||||||||||| ||||||||||| |||| | |||||||    
T  23282726 aagggaatgcacttctaagatgttttgtgattgatcatgctcccctgtcaattgaaacttgtcagttggcagggtagtaaggttaagtt 23282814  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 109
Target Start/End: Original strand, 12763966 - 12764057
Alignment:
Q  21 aagggaatgcacctctaagatgtt---ttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagtt 109  Q
    ||||||||||||||||||||||||   ||||  || ||||||||||| ||||||||||||||||| |||||| || |||||| |||||||||    
T  12763966 aagggaatgcacctctaagatgttgttttgtgtttgatcatgctcctttgtcaattgaaacttgtcagttgggagagcagtaagattaagtt 12764057  T

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Target: chr2; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 25 - 99
Target Start/End: Original strand, 18332986 - 18333063
Alignment:
Q  25 gaatgcacctctaagatgtt---ttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagta 99  Q
    ||||||||||||| ||||||   |||| ||| || |||||||||||||||||||||||||| ||||||||||||||||    
T  18332986 gaatgcacctctatgatgttgttttgtgcttgattatgctcctctgtcaattgaaacttgtcagttggcagggcagta 18333063  T

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Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 5305394 - 5305342
Alignment:
Q  61 tcctctgtcaattgaaacttgttagttggcagggcagtatgattaagttaaaa 113  Q
    |||||||||||||||||||||| |||||||| ||||||| |||||||||||||    
T  5305394 tcctctgtcaattgaaacttgtcagttggcaaggcagtaagattaagttaaaa 5305342  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 122
Target Start/End: Original strand, 18878974 - 18879038
Alignment:
Q  58 tgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagttaaaagaaacctct 122  Q
    ||||||||||||||||||||||||| |||||||| ||| ||| ||||||||| |||| |||||||    
T  18878974 tgctcctctgtcaattgaaacttgtcagttggcaaggccgtaagattaagttcaaagcaacctct 18879038  T

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Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 54 - 109
Target Start/End: Original strand, 18879099 - 18879154
Alignment:
Q  54 atcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaagtt 109  Q
    ||||||||||| ||||||||||||| ||| |||||||||||||||| |||||||||    
T  18879099 atcatgctcctatgtcaattgaaacatgtcagttggcagggcagtaagattaagtt 18879154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 133
Target Start/End: Complemental strand, 28276694 - 28276565
Alignment:
Q  7 gatgagtgggacataagggaatgcacctctaagatgtt---ttgtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatgat 103  Q
    ||||||||  ||| |||||||||||||||||||| |||   |||  ||| |||||| |||||| ||||||||||||| | |||| |||| |||||| |||    
T  28276694 gatgagtgtcacagaagggaatgcacctctaagaggttattttgagcttgatcatgatcctctctcaattgaaacttatcagttagcagcgcagtacgat 28276595  T
Q  104 taagttaaaagaaacctctctgaatacatt 133  Q
    | |||| || | |||||||| |||| ||||    
T  28276594 ttagttcaaggcaacctctcggaatgcatt 28276565  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 200
Target Start/End: Original strand, 18333110 - 18333165
Alignment:
Q  145 ctactcatcttataagtgggaatttgatgggaaaatttgtacaactcattaggtag 200  Q
    |||||||||||||| |   ||||||||||||| ||||| |||||||||||||||||    
T  18333110 ctactcatcttatatgaatgaatttgatgggagaatttatacaactcattaggtag 18333165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 27650140 - 27650092
Alignment:
Q  58 tgctcctctgtcaattgaaacttgttagttggcagggcagtatgattaa 106  Q
    |||| |||| |||||||||||||||||||||||| | ||||| ||||||    
T  27650140 tgctgctctatcaattgaaacttgttagttggcatgacagtaagattaa 27650092  T

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Target: scaffold0015 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 158
Target Start/End: Complemental strand, 22451 - 22295
Alignment:
Q  5 aagatgagtgggacataagggaatgcacctctaagatgttttgt---acttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatg 101  Q
    |||||||||| |||| | | |||||||| ||||||||||| | |   |||| ||||||||| ||||||||||||||||||| |||||| | |||||||||    
T  22451 aagatgagtgtgacaaacgagaatgcacttctaagatgttgttttaaacttgatcatgctcttctgtcaattgaaacttgtcagttgggaaggcagtatg 22352  T
Q  102 attaagttaaaagaaacctctctgaatacatttgtgtttgtcactactcatcttata 158  Q
    |||||||| |||  ||  | |  ||||||||| ||||| | ||||||||||||||||    
T  22351 attaagttcaaaagaatatgttggaatacattcgtgttcgacactactcatcttata 22295  T

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Target: scaffold0121 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 109
Target Start/End: Original strand, 5762 - 5869
Alignment:
Q  5 aagatgagtgggacataagggaatgcacctctaagatgtttt---gtacttcatcatgctcctctgtcaattgaaacttgttagttggcagggcagtatg 101  Q
    |||||||||| |||  ||| |||||||||||||||||||| |   || ||| ||||||||||||||| |||||||||||||  |||||||| |||||| |    
T  5762 aagatgagtgtgacgaaagagaatgcacctctaagatgttgtttcgtgcttgatcatgctcctctgtaaattgaaacttgtctgttggcagtgcagtagg 5861  T
Q  102 attaagtt 109  Q
    ||||||||    
T  5862 attaagtt 5869  T

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Target: scaffold0500 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 165 - 203
Target Start/End: Complemental strand, 3284 - 3246
Alignment:
Q  165 aatttgatgggaaaatttgtacaactcattaggtagaat 203  Q
    |||||||||||||||||||||||||||||||||||||||    
T  3284 aatttgatgggaaaatttgtacaactcattaggtagaat 3246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0591 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 164 - 201
Target Start/End: Complemental strand, 3015 - 2978
Alignment:
Q  164 gaatttgatgggaaaatttgtacaactcattaggtaga 201  Q
    |||||||||| || ||||||||||||||||||||||||    
T  3015 gaatttgatgtgagaatttgtacaactcattaggtaga 2978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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