View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4264-Insertion-5 (Length: 80)
Name: NF4264-Insertion-5
Description: NF4264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4264-Insertion-5 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 69; Significance: 1e-31; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 1e-31
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 4713269 - 4713201
Alignment:
| Q |
12 |
tcaagaagcacaactccgaatgagtacacgtcagacttaagagtcaacttgtttcgtaggtagcactct |
80 |
Q |
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| T |
4713269 |
tcaagaagcacaactccgaatgagtacacgtcagacttaagagtcaacttgtttcgtaggtagcactct |
4713201 |
T |
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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 4854639 - 4854579
Alignment:
| Q |
12 |
tcaagaagcacaactccgaatgagtacacgtcagacttaagagtcaacttgtttcgtaggt |
72 |
Q |
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| T |
4854639 |
tcaagaagtacatcaccgaaagagtacacatcagactttagagtcaacctgtttcgtaggt |
4854579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 4785038 - 4784991
Alignment:
| Q |
12 |
tcaagaagcacaactccgaatgagtacacgtcagacttaagagtcaac |
59 |
Q |
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| T |
4785038 |
tcaagaagcacaacaccgaaagagtacacatcagactttagagtcaac |
4784991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 4817467 - 4817421
Alignment:
| Q |
12 |
tcaagaagcacaactccgaatgagtacacgtcagacttaagagtcaa |
58 |
Q |
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| T |
4817467 |
tcaagaagcacaacaccgaaagagtacacatcagactttagagtcaa |
4817421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 4635770 - 4635813
Alignment:
| Q |
12 |
tcaagaagcacaactccgaatgagtacacgtcagacttaagagt |
55 |
Q |
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| T |
4635770 |
tcaagaagcaccacaccgaatgagtacacgtctgatttaagagt |
4635813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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