View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4264_high_1 (Length: 476)
Name: NF4264_high_1
Description: NF4264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4264_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 17 - 369
Target Start/End: Original strand, 32183648 - 32184003
Alignment:
| Q |
17 |
agatgtaggcacaattgaccgaacttcattactaaaaatcatgtgtccgttcattgactgcagagtttgctatgttttatttacagggttatggacatta |
116 |
Q |
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| T |
32183648 |
agatgtaggcacaattgaccgaacttcattactaaaaatcatgtgtccattcattgactgcagagtttgctatgtttaatttacagggttatgggcatta |
32183747 |
T |
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| Q |
117 |
tataaaggaacagatgttgaatgagcctcttgaagagataatggggaatctacttgaagtaaattcagcagcaacatgtcagctacttgaaaacaaaggt |
216 |
Q |
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| T |
32183748 |
tataaaggaacaggtgttgaatgagcctcttgaagagataatggggaatctacttgaagtaaattcagcagcaacatgtcagctacttgaaaacaaaggt |
32183847 |
T |
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| Q |
217 |
cttgttctgctgcctattgctttggttgatgaactcaaccaagctatgcaatggttgaaccaagctagctagctaactatttatttttac---tctccac |
313 |
Q |
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| T |
32183848 |
cttgttctgctgcctattgctttggttgatgaactgaaccaggctatgcaatggttgaaccaagctagctagataactattttttttttcttttctgcat |
32183947 |
T |
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| Q |
314 |
tatggttgatttatattttgtatgtttggattattaggtatgtgaaccaagctaac |
369 |
Q |
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| T |
32183948 |
tatggttgatttatattttgtatgtttggattattaggtatgtgaaccaagctaac |
32184003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 463
Target Start/End: Original strand, 32184000 - 32184049
Alignment:
| Q |
412 |
taactcttgaaaatctatggtgctcaaaggtggcgtgtgtgttactgtttct |
463 |
Q |
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| T |
32184000 |
taactcttgaaaatctatggtactcagaggtg--gtgtgtgttactgtttct |
32184049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 69 - 207
Target Start/End: Complemental strand, 33635785 - 33635647
Alignment:
| Q |
69 |
attgactgcagagtttgctatgttttatttacagggttatggacattatataaaggaacagatgttgaatgagcctcttgaagagataatggggaatcta |
168 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||| | |||||||||| ||||||||||||||||| |||| | | |
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| T |
33635785 |
attgactgcagattttgctatgttttatttacagggttatgggcagtatataaaggaacaaaagttgaatgagtctcttgaagagataatgaggaaacaa |
33635686 |
T |
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| Q |
169 |
cttgaagtaaattcagcagcaacatgtcagctacttgaa |
207 |
Q |
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| T |
33635685 |
tttgaagagcattcagcagtagcaagttagctacttgaa |
33635647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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