View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4264_high_2 (Length: 337)
Name: NF4264_high_2
Description: NF4264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4264_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 36974456 - 36974777
Alignment:
| Q |
1 |
gattcacacacaaaaagttatactgaatcattcaatgtgagatactccggttctcacaataccat-gataatttccactatctagttgtgattcgacttt |
99 |
Q |
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| T |
36974456 |
gattcacacacaaaaagttataccgaatcattcaatgtgagatactccagttctcacaataccattgataatttccactatctaattgtgattcgacttt |
36974555 |
T |
|
| Q |
100 |
atctcaactataccttttcttagaccacttatggatctatacaattactttgttttcaccacttgggctacatattagttttgacttaactagcttttat |
199 |
Q |
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| T |
36974556 |
atctcaactataccttttcttaaatcacttatggatctatacaattactttgttttcaccacttgggctacatattagttttgacttaactagcttttat |
36974655 |
T |
|
| Q |
200 |
attttccaatcactataacacttagtattctttaaactatttagctatttcttttgatttatgagatattcgaagcctttataaagaactcaagaaaaga |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
36974656 |
attttccaatcactataacacttagtattctttaaactatttagctatttcttttgatttatgagatatttgaagcctttataaagaactcaagaaaaga |
36974755 |
T |
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| Q |
300 |
gttgctgcttgattattatttt |
321 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
36974756 |
gttgctgcttgattattatttt |
36974777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 225
Target Start/End: Complemental strand, 16705077 - 16704990
Alignment:
| Q |
139 |
tacaattactttgttttcaccacttg-ggctacatattagttttgacttaactagcttttatattttccaatcactataacacttagt |
225 |
Q |
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||||||| |||| |||||||| ||| |||| || ||||||||| ||||||| | |||||||| ||| |||||||||||||||||||| |
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| T |
16705077 |
tacaatttctttcttttcacctctttcggctgcacattagttttcacttaaccaacttttataatttacaatcactataacacttagt |
16704990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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