View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4264_low_1 (Length: 681)
Name: NF4264_low_1
Description: NF4264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4264_low_1 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 617; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 617; E-Value: 0
Query Start/End: Original strand, 1 - 665
Target Start/End: Complemental strand, 5903310 - 5902648
Alignment:
| Q |
1 |
aggtagattattgagtcaatagtcaatatttataactatattatatattttagaaaatgaacaacatattaagaaaattattgcaaacaacttacttgga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||| |||| |
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| T |
5903310 |
aggtagattattgagtcaatagtcaatatttataactatattatat--tttagaaaatgaacaaaatattaagaaaattattgcaaccaacttacatgga |
5903213 |
T |
|
| Q |
101 |
ttccagaccatcctttcttgatatcatcagcaacacttgaagactcattgacccatccaagcaaaatccttctattcttcccatcatcaaagaaagtttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5903212 |
ttccagaccatcctttcttgatatcatcagcaacacttgaagactcattgacccatccaagcaaaatccttctattcttcccatcatcaaagaaagtttt |
5903113 |
T |
|
| Q |
201 |
tgatgcataatattttccataatcatatctcaaaatttgttcaatattttcctcctcaaaccctttatcagggacaaatttgtccttttcatcattataa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5903112 |
tgatgcataatattttccataatcatatctcaaaatttgttcaatattttcctcctcaaaccctttatcagggacaaatttgtccttttcatcattataa |
5903013 |
T |
|
| Q |
301 |
gtcccaatgagataataatcatgttttttatcatccaaactaaccttcaatacatgcctaacatcgtcactatttaatgacgtgtcaacaccaaatctac |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5903012 |
gtcccaatgagataataatcatgttttttatcatccaaactaaccttcaatacatgcctaacatcgtcactatttaatgacgtgtcaacaccaaatctac |
5902913 |
T |
|
| Q |
401 |
caattttcaaaacaggnnnnnnntcaggacactcccacattccagtgcctttagctgaatgcaaagggtgttttgatttaatccaattaataaaatcttt |
500 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5902912 |
caattttcaaaacaggaaaaaaatcaggacactcccacattccagtgcctttagctgaatgcaaagggtgttttgatttaatccaattaataaaatcttt |
5902813 |
T |
|
| Q |
501 |
actcttatacaaaattgcaattcccctagtgtttcttttgctaccaataattatcctccaatttccatcttttcctaaccaaccactagttggatctcta |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5902812 |
actcttatacaaaattgcaattcccctagtgtttcttttgctaccaataattatcctccaatttccatcttttcctaaccaaccactagttggatctcta |
5902713 |
T |
|
| Q |
601 |
aatgaacttgcattaattttattttcattagttggttccattaatggattttttggtgacttaat |
665 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
5902712 |
aatgaacttgcattaattttattttcactagttggttccattaatggattttttggtgacttaat |
5902648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 6e-45; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 89 - 233
Target Start/End: Original strand, 42875113 - 42875257
Alignment:
| Q |
89 |
aacttacttggattccagaccatcctttcttgatatcatcagcaacacttgaagactcattgacccatccaagcaaaatccttctattcttcccatcatc |
188 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||| ||||| |||| || | ||| ||||||||||||||||||||||| |
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|
| T |
42875113 |
aacttacatggattccagaccatcctttcttgacatcatcaacaacacttgaagattcattagcccaacccaacaagatccttctattcttcccatcatc |
42875212 |
T |
|
| Q |
189 |
aaagaaagtttttgatgcataatattttccataatcatatctcaa |
233 |
Q |
| |
|
||| || |||||||||||||||||||| ||||||||||||||||| |
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|
| T |
42875213 |
aaaaaatgtttttgatgcataatatttcccataatcatatctcaa |
42875257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 424 - 659
Target Start/End: Original strand, 42875448 - 42875683
Alignment:
| Q |
424 |
tcaggacactcccacattccagtgcctttagctgaatgcaaagggtgttttgatttaatccaattaataaaatctttactcttatacaaaattgcaattc |
523 |
Q |
| |
|
|||||||||||||||||||| || |||| ||||||||| ||||| ||||| | || || ||||| || ||||| |||||| || |||| ||||||||||| |
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|
| T |
42875448 |
tcaggacactcccacattcctgttccttcagctgaatgtaaaggatgtttggcttcaaaccaatcaacaaaatttttacttttgtacataattgcaattc |
42875547 |
T |
|
| Q |
524 |
ccctagtgtttcttttgctaccaataattatcctccaatttccatcttttcctaaccaaccactagttggatctctaaatgaacttgcattaattttatt |
623 |
Q |
| |
|
|| | | | | |||||| ||||| | || |||||||| ||||||||||||| |||| | ||||||| || ||||||||||||||||||||||| || |
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|
| T |
42875548 |
cctttctatgtactttgcttccaattaataccctccaataaccatcttttcctagccaagaagtagttgggtccctaaatgaacttgcattaattttgtt |
42875647 |
T |
|
| Q |
624 |
ttcattagttggttccattaatggattttttggtga |
659 |
Q |
| |
|
|| ||| |||||||| ||||||||||||||||| |
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|
| T |
42875648 |
agcaacagtaggttccatcaatggattttttggtga |
42875683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 370
Target Start/End: Original strand, 42875315 - 42875388
Alignment:
| Q |
297 |
ataagtcccaatgagataataatcatgttttttatcatccaaactaaccttcaatacatgcctaacatcgtcac |
370 |
Q |
| |
|
|||||||||||| | ||| | |||||||||| | ||||||||||||||||| | ||||| |||||||| |||| |
|
|
| T |
42875315 |
ataagtcccaatcaaatagtgatcatgttttgtgtcatccaaactaaccttaagcacatgtctaacatcatcac |
42875388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 123 - 229
Target Start/End: Complemental strand, 1055428 - 1055322
Alignment:
| Q |
123 |
atcatcagcaacacttgaagactcattgacccatccaagcaaaatccttctattcttcccatcatcaaagaaagtttttgatgcataatattttccataa |
222 |
Q |
| |
|
||||| ||||||| |||| | |||||| |||| |||||||||||||||||||| || ||||| | ||||||| ||||||||||||||||||| | ||| |
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|
| T |
1055428 |
atcattagcaacatttgagtagtcattggcccaaccaagcaaaatccttctattttttccatccttaaagaaatattttgatgcataatattttgcttaa |
1055329 |
T |
|
| Q |
223 |
tcatatc |
229 |
Q |
| |
|
|| |||| |
|
|
| T |
1055328 |
tcttatc |
1055322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 424 - 524
Target Start/End: Original strand, 27990925 - 27991025
Alignment:
| Q |
424 |
tcaggacactcccacattccagtgcctttagctgaatgcaaagggtgttttgatttaatccaattaataaaatctttactcttatacaaaattgcaattc |
523 |
Q |
| |
|
|||||||||||| |||||||| | ||| ||||||| ||||| | ||| | || |||||||||||||||||||||||| ||| | |||| || ||||| |
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|
| T |
27990925 |
tcaggacactccaacattccaatttttttggctgaataaaaaggatatttagcttgaatccaattaataaaatctttacttttaaataaaagtgtaattc |
27991024 |
T |
|
| Q |
524 |
c |
524 |
Q |
| |
|
| |
|
|
| T |
27991025 |
c |
27991025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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