View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4264_low_2 (Length: 532)
Name: NF4264_low_2
Description: NF4264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4264_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 436; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 8 - 511
Target Start/End: Original strand, 27002369 - 27002872
Alignment:
| Q |
8 |
cgaagaatattaccaactcgcgaacaataagaaatcagttaacctagctctctcactaggtactcagattctcgacgaaaattactctttaggaaaatct |
107 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| | || |||||||| |||||||||||| |
|
|
| T |
27002369 |
cgaaaaatattaccaactcgcgaacaataagaaatcagttaacctagctctctcactaggttctcaaattctcaatgagaattactcattaggaaaatct |
27002468 |
T |
|
| Q |
108 |
ctcacaactaaccaaatccttaaactcgcatcaaaaggacaacaacaaaacgccatcaacgttgtcctaacagctgctgatgtgttagttgacggttttt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27002469 |
ctcacaactaaccaaatccttaaactcgcatcaaaaggacaacaacaaaacgccatcaacgttgtcctaacagccgctgatgtgttagttgacggttttt |
27002568 |
T |
|
| Q |
208 |
gttcaagtaggtgtggaacccatggttcttcttatggtgcacgcgtgaatggaaagagaaacaagtttgcatacatctgggttggaaattctgaaactca |
307 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
27002569 |
gttcaagtaggtgtggaacacatggttcttcttatggtgcactcgtaaatggaaagagaaacaagttcgcatacatttgggttggaaattctgaaactca |
27002668 |
T |
|
| Q |
308 |
atgtgctggtcaatgcgcgtggccatttcaccaaccaatttatggtccacaaagtgcaccgttggttgcaccaaataacgatgtgggtcttgacggaatg |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
27002669 |
atgtgctggtcaatgcgcgtggccatttcaccaaccaatttatggtccacaaagtgcaccgttggttgcaccaaataacgatgtcggtcttgatggaatg |
27002768 |
T |
|
| Q |
408 |
gttataaatgttgctagtcttttagctggaaccgtaaccaatccttttggtaacggttattttcaaggaccaaaagaagctcctttggaagctgcttcgg |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27002769 |
gttataaatgttgctagtcttttagctggaaccgtaaccaatccttttggtaatggttactttcaaggaccaaaagaagctcctttggaagctgcttcgg |
27002868 |
T |
|
| Q |
508 |
cttg |
511 |
Q |
| |
|
|||| |
|
|
| T |
27002869 |
cttg |
27002872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 13 - 511
Target Start/End: Original strand, 26996099 - 26996597
Alignment:
| Q |
13 |
aatattaccaactcgcgaacaataagaaatcagttaacctagctctctcactaggtactcagattctcgacgaaaattactctttaggaaaatctctcac |
112 |
Q |
| |
|
|||||||||||||| | ||||| ||||||||||||||||||||||| |||||||||||||| ||| | ||||| || ||||||||||||||||||||||| |
|
|
| T |
26996099 |
aatattaccaactcactaacaacaagaaatcagttaacctagctctatcactaggtactcaaattttggacgagaaatactctttaggaaaatctctcac |
26996198 |
T |
|
| Q |
113 |
aactaaccaaatccttaaactcgcatcaaaaggacaacaacaaaacgccatcaacgttgtcctaacagctgctgatgtgttagttgacggtttttgttca |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
26996199 |
aactaaccaaatccttaaactcgcatcaaaaggacaacaacaaaacgccatcaacgttgtcctaacagccgctgatgtgttagttgacggtttttgttca |
26996298 |
T |
|
| Q |
213 |
agtaggtgtggaacccatggttcttcttatggtgcacgcgtgaatggaaagagaaacaagtttgcatacatctgggttggaaattctgaaactcaatgtg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| || || ||||||| |
|
|
| T |
26996299 |
agtaggtgtggaacccatggttcttcttatggtgcacgcgtgaatggaaagagaaacaagttcgcatacatttgggttggaaattcagagacacaatgtg |
26996398 |
T |
|
| Q |
313 |
ctggtcaatgcgcgtggccatttcaccaaccaatttatggtccacaaagtgcaccgttggttgcaccaaataacgatgtgggtcttgacggaatggttat |
412 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26996399 |
ctggtcaatgcgcgtggccatttcatcaaccaatttatggtccacaaagtgctccgttggttgcaccaaataacgatgtgggtcttgacggaatggttat |
26996498 |
T |
|
| Q |
413 |
aaatgttgctagtcttttagctggaaccgtaaccaatccttttggtaacggttattttcaaggaccaaaagaagctcctttggaagctgcttcggcttg |
511 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26996499 |
aaatgttgctagtcttttagctggaaccgtaaccaatccttttggtaacggttattttcaaggaccaaaagaagctcctttggaagctgcttcggcttg |
26996597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 13 - 511
Target Start/End: Original strand, 26721655 - 26722153
Alignment:
| Q |
13 |
aatattaccaactcgcgaacaataagaaatcagttaacctagctctctcactaggtactcagattctcgacgaaaattactctttaggaaaatctctcac |
112 |
Q |
| |
|
|||||||||||||| | ||||| ||||||||||||||||||||||||||||||||| |||| ||||| ||||| || ||||||||||||||||||||||| |
|
|
| T |
26721655 |
aatattaccaactcactaacaacaagaaatcagttaacctagctctctcactaggttctcaaattcttgacgagaaatactctttaggaaaatctctcac |
26721754 |
T |
|
| Q |
113 |
aactaaccaaatccttaaactcgcatcaaaaggacaacaacaaaacgccatcaacgttgtcctaacagctgctgatgtgttagttgacggtttttgttca |
212 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26721755 |
aactaaccaaatccttaatctcgcatcaaaaggacaacaacaaaacgccatcaacgttgtcctaacagctgctgatgtgttagttgacggtttttgttca |
26721854 |
T |
|
| Q |
213 |
agtaggtgtggaacccatggttcttcttatggtgcacgcgtgaatggaaagagaaacaagtttgcatacatctgggttggaaattctgaaactcaatgtg |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||| |||||||||||||| || || ||||||| |
|
|
| T |
26721855 |
agtaggtgtggaacccatggttcttcttatggtgcacgcgtaaatggaaagagaaacaagttcgcgtacatttgggttggaaattcggagacacaatgtg |
26721954 |
T |
|
| Q |
313 |
ctggtcaatgcgcgtggccatttcaccaaccaatttatggtccacaaagtgcaccgttggttgcaccaaataacgatgtgggtcttgacggaatggttat |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26721955 |
ctggtcaatgcgcgtggccatttcaccaaccaatttatggtccacaaagtgcaccgttggttgcaccaaataacgatgtgggtcttgacggaatggttat |
26722054 |
T |
|
| Q |
413 |
aaatgttgctagtcttttagctggaaccgtaaccaatccttttggtaacggttattttcaaggaccaaaagaagctcctttggaagctgcttcggcttg |
511 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26722055 |
aaatgttgctagtcttttagctggaaccgtaacaaatccttttggtaatggttattttcaaggacctaaagaagctcctttggaagctgcttcggcttg |
26722153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 13 - 511
Target Start/End: Original strand, 26991404 - 26991902
Alignment:
| Q |
13 |
aatattaccaactcgcgaacaataagaaatcagttaacctagctctctcactaggtactcagattctcgacgaaaattactctttaggaaaatctctcac |
112 |
Q |
| |
|
|||||||||||||| | ||||| ||||||||||||||||||||||||||||||||| |||| ||||| ||||| || ||||||||||||||||||||||| |
|
|
| T |
26991404 |
aatattaccaactcactaacaacaagaaatcagttaacctagctctctcactaggttctcaaattcttgacgagaaatactctttaggaaaatctctcac |
26991503 |
T |
|
| Q |
113 |
aactaaccaaatccttaaactcgcatcaaaaggacaacaacaaaacgccatcaacgttgtcctaacagctgctgatgtgttagttgacggtttttgttca |
212 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26991504 |
aactaaccaaatccttaatctcgcatcaaaaggacaacaacaaaacgccatcaacgttgtcctaacagctgctgatgtgttagttgacggtttttgttca |
26991603 |
T |
|
| Q |
213 |
agtaggtgtggaacccatggttcttcttatggtgcacgcgtgaatggaaagagaaacaagtttgcatacatctgggttggaaattctgaaactcaatgtg |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||| |||||||||||||| || || ||||||| |
|
|
| T |
26991604 |
agtaggtgtggaacccatggttcttcttatggtgcacgcgtaaatggaaagagaaacaagttcgcgtacatttgggttggaaattcggagacacaatgtg |
26991703 |
T |
|
| Q |
313 |
ctggtcaatgcgcgtggccatttcaccaaccaatttatggtccacaaagtgcaccgttggttgcaccaaataacgatgtgggtcttgacggaatggttat |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26991704 |
ctggtcaatgcgcgtggccatttcaccaaccaatttatggtccacaaagtgcaccgttggttgcaccaaataacgatgtgggtcttgacggaatggttat |
26991803 |
T |
|
| Q |
413 |
aaatgttgctagtcttttagctggaaccgtaaccaatccttttggtaacggttattttcaaggaccaaaagaagctcctttggaagctgcttcggcttg |
511 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26991804 |
aaatgttgctagtcttttagctggaaccgtaacaaatccttttggtaatggttattttcaaggacctaaagaagctcctttggaagctgcttcggcttg |
26991902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 1e-39; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 273 - 512
Target Start/End: Original strand, 33811374 - 33811613
Alignment:
| Q |
273 |
tttgcatacatctgggttggaaattctgaaactcaatgtgctggtcaatgcgcgtggccatttcaccaaccaatttatggtccacaaagtgcaccgttgg |
372 |
Q |
| |
|
||||| ||||| ||||||||||| || ||||| || ||| | || | ||| || ||||||||||||||||||||||| ||||||||||| ||||| |||| |
|
|
| T |
33811374 |
tttgcttacatttgggttggaaactcagaaacacagtgtccagggctatgtgcttggccatttcaccaaccaatttacggtccacaaagcgcaccattgg |
33811473 |
T |
|
| Q |
373 |
ttgcaccaaataacgatgtgggtcttgacggaatggttataaatgttgctagtcttttagctggaaccgtaaccaatccttttggtaacggttattttca |
472 |
Q |
| |
|
|||||||||| |||||||| || ||||| |||||||| ||||| | |||||||||||||||||||| | ||| || |||||||| || ||||| ||||| |
|
|
| T |
33811474 |
ttgcaccaaacaacgatgtagggcttgatggaatggtgataaacttggctagtcttttagctggaacagcaacaaacccttttggaaatggttactttca |
33811573 |
T |
|
| Q |
473 |
aggaccaaaagaagctcctttggaagctgcttcggcttgt |
512 |
Q |
| |
|
||| || ||||||||| | ||||| ||||| |||||| |
|
|
| T |
33811574 |
aggtccttctgaagctcctcttgaagccgcttcagcttgt |
33811613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 306 - 511
Target Start/End: Original strand, 33828643 - 33828848
Alignment:
| Q |
306 |
caatgtgctggtcaatgcgcgtggccatttcaccaaccaatttatggtccacaaagtgcaccgttggttgcaccaaataacgatgtgggtcttgacggaa |
405 |
Q |
| |
|
|||||| | |||||||| |||||||| ||||||||||| |||||||| || |||||| ||||||| ||||||||||||||||||||||| |||||||| | |
|
|
| T |
33828643 |
caatgtccaggtcaatgtgcgtggccctttcaccaacctatttatgggcctcaaagtccaccgttagttgcaccaaataacgatgtgggccttgacggca |
33828742 |
T |
|
| Q |
406 |
tggttataaatgttgctagtcttttagctggaaccgtaaccaatccttttggtaacggttattttcaaggaccaaaagaagctcctttggaagctgcttc |
505 |
Q |
| |
|
|||| || || || |||||| | || ||||| || | || || || ||||| ||||| || | |||||| || |||||||| ||| | ||||||||||| |
|
|
| T |
33828743 |
tggtaattaacgtggctagtttgttggctggggccttgacgaacccatttggaaacgggtactatcaaggccccaaagaagcacctcttgaagctgcttc |
33828842 |
T |
|
| Q |
506 |
ggcttg |
511 |
Q |
| |
|
|||||| |
|
|
| T |
33828843 |
ggcttg |
33828848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 318 - 514
Target Start/End: Original strand, 33821427 - 33821623
Alignment:
| Q |
318 |
caatgcgcgtggccatttcaccaaccaatttatggtccacaaagtgcaccgttggttgcaccaaataacgatgtgggtcttgacggaatggttataaatg |
417 |
Q |
| |
|
|||||||| ||||| ||||||||||| |||||||| || ||||| ||||||| |||||||| |||||||||||||| |||||||| ||||| || || | |
|
|
| T |
33821427 |
caatgcgcatggccctttcaccaacctatttatgggcctcaaagcccaccgttagttgcacccaataacgatgtgggccttgacggcatggtgattaacg |
33821526 |
T |
|
| Q |
418 |
ttgctagtcttttagctggaaccgtaaccaatccttttggtaacggttattttcaaggaccaaaagaagctcctttggaagctgcttcggcttgtac |
514 |
Q |
| |
|
| |||||| | || ||||| ||| || || || ||||| || || || | |||||| || |||||||| ||| | ||||| |||||||||||||| |
|
|
| T |
33821527 |
tggctagtttattggctggggtcgtgacgaacccatttggaaatgggtactatcaaggccccaaagaagcacctcttgaagccgcttcggcttgtac |
33821623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 238
Target Start/End: Original strand, 33821285 - 33821368
Alignment:
| Q |
155 |
aaacgccatcaacgttgtcctaacagctgctgatgtgttagttgacggtttttgttcaagtaggtgtggaacccatggttcttc |
238 |
Q |
| |
|
|||||||||||||||||| || || | ||||| ||| ||||||| || |||||||| ||||| ||||| || ||||||||||| |
|
|
| T |
33821285 |
aaacgccatcaacgttgttctcacttcggctgacgtggtagttgatgggttttgttccagtagatgtgggacacatggttcttc |
33821368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 279 - 349
Target Start/End: Original strand, 1760831 - 1760901
Alignment:
| Q |
279 |
tacatctgggttggaaattctgaaactcaatgtgctggtcaatgcgcgtggccatttcaccaaccaattta |
349 |
Q |
| |
|
||||| ||||||||||| ||||| || |||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1760831 |
tacatttgggttggaaactctgagacccaatgtcctggtcaatgcgcatggccatttcaccaaccaattta |
1760901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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