View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4264_low_8 (Length: 225)

Name: NF4264_low_8
Description: NF4264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4264_low_8
NF4264_low_8
[»] chr6 (6 HSPs)
chr6 (11-83)||(27588777-27588849)
chr6 (83-143)||(27588874-27588934)
chr6 (83-143)||(26807174-26807234)
chr6 (91-143)||(25079095-25079147)
chr6 (83-136)||(26639850-26639903)
chr6 (83-136)||(26745816-26745869)
[»] chr4 (1 HSPs)
chr4 (91-147)||(5082557-5082613)


Alignment Details
Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 27588777 - 27588849
Alignment:
Q  11 cacagatgccatgtttttgcaattttgaacttgatataaacgatgatataagatgaagtttaacttgacctgt 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27588777 cacagatgccatgtttttgcaattttgaacttgatataaacgatgatataagatgaagtttaacttgacctgt 27588849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 83 - 143
Target Start/End: Original strand, 27588874 - 27588934
Alignment:
Q  83 taacagtattcatactccctaagaaatgacaagttatgcatattcagaaatatattacttt 143  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27588874 taacagtattcatactccctaagaaatgacaagttatgcatattcagaaatatattacttt 27588934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 26807234 - 26807174
Alignment:
Q  83 taacagtattcatactccctaagaaatgacaagttatgcatattcagaaatatattacttt 143  Q
    |||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||    
T  26807234 taacagtatttatactccctaagaaatgacaagttatgcatattcattaatatattacttt 26807174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 25079147 - 25079095
Alignment:
Q  91 ttcatactccctaagaaatgacaagttatgcatattcagaaatatattacttt 143  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  25079147 ttcacactccctaagaaatgacaagttatgcatatttagaaatatattacttt 25079095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 83 - 136
Target Start/End: Complemental strand, 26639903 - 26639850
Alignment:
Q  83 taacagtattcatactccctaagaaatgacaagttatgcatattcagaaatata 136  Q
    |||| ||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  26639903 taactgtattcatattccctaagaaatgacaagttatgcatatttagaaatata 26639850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 83 - 136
Target Start/End: Complemental strand, 26745869 - 26745816
Alignment:
Q  83 taacagtattcatactccctaagaaatgacaagttatgcatattcagaaatata 136  Q
    |||| ||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  26745869 taactgtattcatattccctaagaaatgacaagttatgcatatttagaaatata 26745816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 147
Target Start/End: Complemental strand, 5082613 - 5082557
Alignment:
Q  91 ttcatactccctaagaaatgacaagttatgcatattcagaaatatattactttagga 147  Q
    |||||| | |||||||||||||||||||| ||||||   |||||||||| |||||||    
T  5082613 ttcataatacctaagaaatgacaagttattcatatttgaaaatatattattttagga 5082557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University