View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4265-Insertion-14 (Length: 81)

Name: NF4265-Insertion-14
Description: NF4265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4265-Insertion-14
NF4265-Insertion-14
[»] chr7 (11 HSPs)
chr7 (2-81)||(31608294-31608373)
chr7 (2-81)||(31595091-31595170)
chr7 (2-81)||(31576034-31576113)
chr7 (2-81)||(31604700-31604779)
chr7 (2-81)||(31614575-31614654)
chr7 (2-81)||(31618304-31618383)
chr7 (2-81)||(31585444-31585523)
chr7 (8-81)||(31439138-31439211)
chr7 (2-81)||(31532433-31532512)
chr7 (2-81)||(31541056-31541135)
chr7 (5-69)||(33305267-33305331)
[»] chr1 (2 HSPs)
chr1 (2-81)||(52174426-52174505)
chr1 (23-63)||(49728741-49728781)
[»] scaffold0394 (1 HSPs)
scaffold0394 (5-81)||(1976-2052)
[»] chr4 (1 HSPs)
chr4 (5-81)||(15063482-15063558)


Alignment Details
Target: chr7 (Bit Score: 80; Significance: 3e-38; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 3e-38
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 31608373 - 31608294
Alignment:
Q  2 ccagaagtatttagtagagcatttggtggtgtttcttacaaatctgatgtatatagttatggcatgttgattcttgaaat 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31608373 ccagaagtatttagtagagcatttggtggtgtttcttacaaatctgatgtatatagttatggcatgttgattcttgaaat 31608294  T

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Target: chr7; HSP #2
Raw Score: 68; E-Value: 5e-31
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 31595170 - 31595091
Alignment:
Q  2 ccagaagtatttagtagagcatttggtggtgtttcttacaaatctgatgtatatagttatggcatgttgattcttgaaat 81  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  31595170 ccagaagtatttagcagagcatttggtggtgtttcttacaaatctgatgtatacagttatggtatgttgattcttgaaat 31595091  T

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Target: chr7; HSP #3
Raw Score: 64; E-Value: 1e-28
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 31576113 - 31576034
Alignment:
Q  2 ccagaagtatttagtagagcatttggtggtgtttcttacaaatctgatgtatatagttatggcatgttgattcttgaaat 81  Q
    ||||||| ||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31576113 ccagaagcatttaatagatcatttggtggagtttcttacaaatctgatgtatatagttatggcatgttgattcttgaaat 31576034  T

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Target: chr7; HSP #4
Raw Score: 64; E-Value: 1e-28
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 31604779 - 31604700
Alignment:
Q  2 ccagaagtatttagtagagcatttggtggtgtttcttacaaatctgatgtatatagttatggcatgttgattcttgaaat 81  Q
    ||||||| ||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31604779 ccagaagcatttaatagatcatttggtggagtttcttacaaatctgatgtatatagttatggcatgttgattcttgaaat 31604700  T

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Target: chr7; HSP #5
Raw Score: 64; E-Value: 1e-28
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 31614654 - 31614575
Alignment:
Q  2 ccagaagtatttagtagagcatttggtggtgtttcttacaaatctgatgtatatagttatggcatgttgattcttgaaat 81  Q
    |||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  31614654 ccagaagtatttagcagagcatttggcggagtttcttacaaatctgatgtatatagttatggaatgttgattcttgaaat 31614575  T

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Target: chr7; HSP #6
Raw Score: 60; E-Value: 3e-26
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 31618383 - 31618304
Alignment:
Q  2 ccagaagtatttagtagagcatttggtggtgtttcttacaaatctgatgtatatagttatggcatgttgattcttgaaat 81  Q
    |||||| ||||||||||||| |||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  31618383 ccagaaatatttagtagagcgtttggtggagtttcgtacagatctgatgtatatagttatggcatgttgattcttgaaat 31618304  T

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Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 31585523 - 31585444
Alignment:
Q  2 ccagaagtatttagtagagcatttggtggtgtttcttacaaatctgatgtatatagttatggcatgttgattcttgaaat 81  Q
    |||||| |||| | |||||| |||||||| |||||| |||| |||||||| ||||||||||||||| ||||||| |||||    
T  31585523 ccagaaatattcattagagcctttggtggagtttctcacaagtctgatgtgtatagttatggcatgctgattctagaaat 31585444  T

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Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 31439138 - 31439211
Alignment:
Q  8 gtatttagtagagcatttggtggtgtttcttacaaatctgatgtatatagttatggcatgttgattcttgaaat 81  Q
    ||||| ||| ||||||||||||| |||||||  || ||||||||||| |||||||||||||||| ||| |||||    
T  31439138 gtattcagtcgagcatttggtggagtttcttctaagtctgatgtatacagttatggcatgttgactctcgaaat 31439211  T

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Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 31532512 - 31532433
Alignment:
Q  2 ccagaagtatttagtagagcatttggtggtgtttcttacaaatctgatgtatatagttatggcatgttgattcttgaaat 81  Q
    |||||||| |||||| || ||| |||||| |||||| |||| ||||||||||| |||||||| ||||| ||||| |||||    
T  31532512 ccagaagtgtttagtcgaacatatggtggagtttctcacaagtctgatgtatacagttatgggatgttaattctagaaat 31532433  T

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Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 31541135 - 31541056
Alignment:
Q  2 ccagaagtatttagtagagcatttggtggtgtttcttacaaatctgatgtatatagttatggcatgttgattcttgaaat 81  Q
    ||||||||||| ||  || ||| |||||| |||||| | || |||||||||||||||||||| ||||| ||||| |||||    
T  31541135 ccagaagtattcagccgaacatatggtggagtttctcataagtctgatgtatatagttatggtatgttaattctagaaat 31541056  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 33305267 - 33305331
Alignment:
Q  5 gaagtatttagtagagcatttggtggtgtttcttacaaatctgatgtatatagttatggcatgtt 69  Q
    |||||||||||| || |||||||||| |||||| | || || |||||||| |||||||| |||||    
T  33305267 gaagtatttagtcgaacatttggtggagtttctcataagtccgatgtatacagttatggtatgtt 33305331  T

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Target: chr1 (Bit Score: 68; Significance: 5e-31; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 5e-31
Query Start/End: Original strand, 2 - 81
Target Start/End: Original strand, 52174426 - 52174505
Alignment:
Q  2 ccagaagtatttagtagagcatttggtggtgtttcttacaaatctgatgtatatagttatggcatgttgattcttgaaat 81  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  52174426 ccagaagtatatagtagagcatttggtggtgtttcttacaaatctgatatatacagttatggcatgttgattcttgaaat 52174505  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 49728741 - 49728781
Alignment:
Q  23 tttggtggtgtttcttacaaatctgatgtatatagttatgg 63  Q
    |||||||| || ||| |||||||||||||||||||||||||    
T  49728741 tttggtggcgtctctcacaaatctgatgtatatagttatgg 49728781  T

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Target: scaffold0394 (Bit Score: 45; Significance: 3e-17; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 45; E-Value: 3e-17
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 2052 - 1976
Alignment:
Q  5 gaagtatttagtagagcatttggtggtgtttcttacaaatctgatgtatatagttatggcatgttgattcttgaaat 81  Q
    |||||||||||| |||| |||||||  |||||||  || ||||||||||| ||||||||||||||||||||||||||    
T  2052 gaagtatttagtcgagcttttggtgcagtttcttctaagtctgatgtatacagttatggcatgttgattcttgaaat 1976  T

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Target: chr4 (Bit Score: 45; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-17
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 15063482 - 15063558
Alignment:
Q  5 gaagtatttagtagagcatttggtggtgtttcttacaaatctgatgtatatagttatggcatgttgattcttgaaat 81  Q
    |||||||||||| |||| |||||||  |||||||  || ||||||||||| ||||||||||||||||||||||||||    
T  15063482 gaagtatttagtcgagcttttggtgcagtttcttctaagtctgatgtatacagttatggcatgttgattcttgaaat 15063558  T

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