View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4265-Insertion-15 (Length: 38)
Name: NF4265-Insertion-15
Description: NF4265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4265-Insertion-15 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 38; Significance: 0.0000000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 5842164 - 5842127
Alignment:
| Q |
1 |
gacacatcaatcaaccaaagttcattaatgcagcaata |
38 |
Q |
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| T |
5842164 |
gacacatcaatcaaccaaagttcattaatgcagcaata |
5842127 |
T |
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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 5848874 - 5848837
Alignment:
| Q |
1 |
gacacatcaatcaaccaaagttcattaatgcagcaata |
38 |
Q |
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| T |
5848874 |
gacacatcaatcaaccaaagttcattaatgcagcaata |
5848837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 28; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 38
Target Start/End: Complemental strand, 5886483 - 5886452
Alignment:
| Q |
7 |
tcaatcaaccaaagttcattaatgcagcaata |
38 |
Q |
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| T |
5886483 |
tcaatcaaccaaagttcattaatgcaacaata |
5886452 |
T |
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