View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4265-Insertion-3 (Length: 103)

Name: NF4265-Insertion-3
Description: NF4265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4265-Insertion-3
NF4265-Insertion-3
[»] chr2 (1 HSPs)
chr2 (1-103)||(12603764-12603867)
[»] chr8 (5 HSPs)
chr8 (22-84)||(42180680-42180742)
chr8 (31-84)||(15269017-15269070)
chr8 (22-84)||(43597203-43597265)
chr8 (20-84)||(16295707-16295771)
chr8 (20-84)||(16303409-16303473)
[»] chr6 (1 HSPs)
chr6 (23-84)||(391015-391076)
[»] chr3 (2 HSPs)
chr3 (23-84)||(28457513-28457574)
chr3 (23-84)||(40700756-40700817)


Alignment Details
Target: chr2 (Bit Score: 80; Significance: 5e-38; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 5e-38
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 12603764 - 12603867
Alignment:
Q  1 agaatgatgtacatttagttctgtttaatggtcaggatatgatagagacaaaatatgatattgagctgaatagagatatgatat-atacaaacatgatag 99  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||| ||||||||||    
T  12603764 agaatcatgtacatttagttctgtttaatggtcaggatatgatagagacaagatatgatattgagccgaatagagatatgatatgatacgaacatgatag 12603863  T
Q  100 atat 103  Q
    ||||    
T  12603864 atat 12603867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 42180742 - 42180680
Alignment:
Q  22 tgtttaatggtcaggatatgatagagacaaaatatgatattgagctgaatagagatatgatat 84  Q
    ||||| |||| ||||||||||||||||||| |||||||||  || || |||||||||||||||    
T  42180742 tgtttgatggacaggatatgatagagacaagatatgatataaagttgtatagagatatgatat 42180680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 84
Target Start/End: Complemental strand, 15269070 - 15269017
Alignment:
Q  31 gtcaggatatgatagagacaaaatatgatattgagctgaatagagatatgatat 84  Q
    ||||| ||| ||||||||||| |||||||||  |||||||||||||||||||||    
T  15269070 gtcagtataggatagagacaagatatgatataaagctgaatagagatatgatat 15269017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 43597265 - 43597203
Alignment:
Q  22 tgtttaatggtcaggatatgatagagacaaaatatgatattgagctgaatagagatatgatat 84  Q
    |||||||||||||||||| ||||||| ||  |||||||||  || || |||||||||||||||    
T  43597265 tgtttaatggtcaggataggatagaggcagtatatgatataaagttggatagagatatgatat 43597203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 16295771 - 16295707
Alignment:
Q  20 tctgtttaatggtcaggatatgatagagacaaaatatgatattgagctgaatagagatatgatat 84  Q
    ||||||| ||||||| |||||||||||| ||  | |||||||  ||||| |||||||||||||||    
T  16295771 tctgtttgatggtcatgatatgatagaggcatgacatgatataaagctggatagagatatgatat 16295707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 16303473 - 16303409
Alignment:
Q  20 tctgtttaatggtcaggatatgatagagacaaaatatgatattgagctgaatagagatatgatat 84  Q
    ||||||| ||||||| |||||||||||| ||  | |||||||  ||||| |||||||||||||||    
T  16303473 tctgtttgatggtcatgatatgatagaggcatgacatgatataaagctggatagagatatgatat 16303409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 391015 - 391076
Alignment:
Q  23 gtttaatggtcaggatatgatagagacaaaatatgatattgagctgaatagagatatgatat 84  Q
    |||| |||||||||||||||||||| || ||||||||||  ||||| ||||||||| |||||    
T  391015 gtttgatggtcaggatatgatagaggcagaatatgatataaagctggatagagataagatat 391076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 28457513 - 28457574
Alignment:
Q  23 gtttaatggtcaggatatgatagagacaaaatatgatattgagctgaatagagatatgatat 84  Q
    |||| |||||||||||| ||||||| ||| |||||||||  || |||||||| |||||||||    
T  28457513 gtttgatggtcaggataagatagagtcaagatatgatataaagttgaatagatatatgatat 28457574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 40700756 - 40700817
Alignment:
Q  23 gtttaatggtcaggatatgatagagacaaaatatgatattgagctgaatagagatatgatat 84  Q
    |||| ||||||||||||||||| || ||| |||||||||  ||||| ||||||||| |||||    
T  40700756 gtttgatggtcaggatatgataaaggcaagatatgatataaagctggatagagataggatat 40700817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University