View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4265-Insertion-4 (Length: 73)

Name: NF4265-Insertion-4
Description: NF4265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4265-Insertion-4
NF4265-Insertion-4
[»] chr2 (3 HSPs)
chr2 (33-73)||(30466849-30466889)
chr2 (33-73)||(32845214-32845254)
chr2 (33-73)||(18976474-18976514)
[»] chr1 (3 HSPs)
chr1 (35-72)||(43769985-43770022)
chr1 (33-73)||(23041660-23041700)
chr1 (34-73)||(36155907-36155946)
[»] chr8 (2 HSPs)
chr8 (33-73)||(15259425-15259465)
chr8 (33-73)||(34610706-34610746)
[»] chr7 (5 HSPs)
chr7 (33-73)||(11997991-11998031)
chr7 (33-73)||(17196969-17197009)
chr7 (33-73)||(25333545-25333585)
chr7 (33-73)||(31274055-31274095)
chr7 (33-73)||(33137844-33137884)
[»] chr6 (1 HSPs)
chr6 (33-73)||(5360090-5360130)
[»] chr4 (3 HSPs)
chr4 (33-73)||(44343652-44343692)
chr4 (33-73)||(51535759-51535799)
chr4 (33-73)||(52494626-52494666)
[»] chr3 (2 HSPs)
chr3 (33-73)||(8456169-8456209)
chr3 (33-73)||(40133468-40133508)


Alignment Details
Target: chr2 (Bit Score: 33; Significance: 0.0000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 30466889 - 30466849
Alignment:
Q  33 agtgggcagtggaattggtcccttcgaattagtcgattctt 73  Q
    |||||||||||| ||||||||||||| ||||||||||||||    
T  30466889 agtgggcagtgggattggtcccttcggattagtcgattctt 30466849  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 32845214 - 32845254
Alignment:
Q  33 agtgggcagtggaattggtcccttcgaattagtcgattctt 73  Q
    ||||||| |||| ||||||||||||||||||||||||||||    
T  32845214 agtgggcggtgggattggtcccttcgaattagtcgattctt 32845254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 18976514 - 18976474
Alignment:
Q  33 agtgggcagtggaattggtcccttcgaattagtcgattctt 73  Q
    ||||||| |||| ||||||||| ||||||||||||||||||    
T  18976514 agtgggcggtgggattggtcccctcgaattagtcgattctt 18976474  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 43770022 - 43769985
Alignment:
Q  35 tgggcagtggaattggtcccttcgaattagtcgattct 72  Q
    ||||| |||| |||||||||||||||||||||||||||    
T  43770022 tgggcggtgggattggtcccttcgaattagtcgattct 43769985  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 23041660 - 23041700
Alignment:
Q  33 agtgggcagtggaattggtcccttcgaattagtcgattctt 73  Q
    ||||| |||||| ||||||||| ||||||||||||||||||    
T  23041660 agtggacagtgggattggtcccctcgaattagtcgattctt 23041700  T

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Target: chr1; HSP #3
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 73
Target Start/End: Complemental strand, 36155946 - 36155907
Alignment:
Q  34 gtgggcagtggaattggtcccttcgaattagtcgattctt 73  Q
    |||||| |||| |||||||||||| |||||||||||||||    
T  36155946 gtgggcggtgggattggtcccttcaaattagtcgattctt 36155907  T

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Target: chr8 (Bit Score: 29; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 15259465 - 15259425
Alignment:
Q  33 agtgggcagtggaattggtcccttcgaattagtcgattctt 73  Q
    ||||||| ||| |||||||||| ||||||||||||||||||    
T  15259465 agtgggcggtgtaattggtcccctcgaattagtcgattctt 15259425  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 34610746 - 34610706
Alignment:
Q  33 agtgggcagtggaattggtcccttcgaattagtcgattctt 73  Q
    ||||||| || ||||||||||| ||||||||||||||||||    
T  34610746 agtgggcggtagaattggtcccctcgaattagtcgattctt 34610706  T

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Target: chr7 (Bit Score: 29; Significance: 0.00000008; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 11997991 - 11998031
Alignment:
Q  33 agtgggcagtggaattggtcccttcgaattagtcgattctt 73  Q
    ||||||| |||| ||||||||| ||||||||||||||||||    
T  11997991 agtgggcggtgggattggtcccctcgaattagtcgattctt 11998031  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 17197009 - 17196969
Alignment:
Q  33 agtgggcagtggaattggtcccttcgaattagtcgattctt 73  Q
    ||||||| |||| ||||||||| ||||||||||||||||||    
T  17197009 agtgggcggtgggattggtcccctcgaattagtcgattctt 17196969  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 25333545 - 25333585
Alignment:
Q  33 agtgggcagtggaattggtcccttcgaattagtcgattctt 73  Q
    |||||||||||| ||||||||| ||| ||||||||||||||    
T  25333545 agtgggcagtgggattggtcccctcggattagtcgattctt 25333585  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 31274055 - 31274095
Alignment:
Q  33 agtgggcagtggaattggtcccttcgaattagtcgattctt 73  Q
    |||||||||||  ||||||||| ||||||||||||||||||    
T  31274055 agtgggcagtgagattggtcccctcgaattagtcgattctt 31274095  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 33137884 - 33137844
Alignment:
Q  33 agtgggcagtggaattggtcccttcgaattagtcgattctt 73  Q
    ||||||| ||| |||||||||| ||||||||||||||||||    
T  33137884 agtgggcggtgaaattggtcccctcgaattagtcgattctt 33137844  T

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Target: chr6 (Bit Score: 29; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 5360130 - 5360090
Alignment:
Q  33 agtgggcagtggaattggtcccttcgaattagtcgattctt 73  Q
    ||||||| |||| ||||||||| ||||||||||||||||||    
T  5360130 agtgggcggtgggattggtcccctcgaattagtcgattctt 5360090  T

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Target: chr4 (Bit Score: 29; Significance: 0.00000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 44343652 - 44343692
Alignment:
Q  33 agtgggcagtggaattggtcccttcgaattagtcgattctt 73  Q
    ||||||| |||| ||||||||| ||||||||||||||||||    
T  44343652 agtgggcggtgggattggtcccctcgaattagtcgattctt 44343692  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 51535759 - 51535799
Alignment:
Q  33 agtgggcagtggaattggtcccttcgaattagtcgattctt 73  Q
    ||||||| |||| ||||||||| ||||||||||||||||||    
T  51535759 agtgggcggtgggattggtcccctcgaattagtcgattctt 51535799  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 52494626 - 52494666
Alignment:
Q  33 agtgggcagtggaattggtcccttcgaattagtcgattctt 73  Q
    ||||||| |||| ||||||||| ||||||||||||||||||    
T  52494626 agtgggcggtgggattggtcccctcgaattagtcgattctt 52494666  T

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Target: chr3 (Bit Score: 29; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 8456209 - 8456169
Alignment:
Q  33 agtgggcagtggaattggtcccttcgaattagtcgattctt 73  Q
    |||||||||||| ||||||||| ||| ||||||||||||||    
T  8456209 agtgggcagtgggattggtcccctcggattagtcgattctt 8456169  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 40133508 - 40133468
Alignment:
Q  33 agtgggcagtggaattggtcccttcgaattagtcgattctt 73  Q
    ||||||| |||| ||||||||| ||||||||||||||||||    
T  40133508 agtgggcggtgggattggtcccctcgaattagtcgattctt 40133468  T

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