View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4265_high_11 (Length: 314)
Name: NF4265_high_11
Description: NF4265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4265_high_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 40870398 - 40870700
Alignment:
| Q |
1 |
cacaggtatatgaaatcaaatgtcacaaatcatctaccaagatcacctaagtgaagggacatatatacataatcattaactcgaaaaataactcttgaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40870398 |
cacaggtatatgaaatcaaatgtctcaaatcatctaccaagttcacctaagtgaagggacatatatacataatcattaactcgaaaaataactcttgaaa |
40870497 |
T |
|
| Q |
101 |
tttcaagcatttcataatttgtcgcatgtgtacataaattttgttacaatattaatttctttcatctttgcactatatattactcttctcaattttagat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
40870498 |
tttcaagcatttcataatttgtcgcatgtgtacataaattttgttacaatattaatttctttcatctttgcactatgtattactcttctcaattttagat |
40870597 |
T |
|
| Q |
201 |
gagccaaatatgattctaaatttgttaattgcgttctaaactctcgatgaagtaccttgtcgcacacgtgttcctacttaatataatttgagaaattagt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40870598 |
gagccaaatatgattctaaatttgttaattgcgttctaaactcttgatgaagtaccttgtcgcacacgtgttcctacttaatataatttgagaaattagt |
40870697 |
T |
|
| Q |
301 |
ctc |
303 |
Q |
| |
|
||| |
|
|
| T |
40870698 |
ctc |
40870700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University