View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4265_high_14 (Length: 277)

Name: NF4265_high_14
Description: NF4265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4265_high_14
NF4265_high_14
[»] chr3 (5 HSPs)
chr3 (1-258)||(1893699-1893971)
chr3 (1-258)||(1903145-1903417)
chr3 (1-258)||(2934409-2934674)
chr3 (94-256)||(1900709-1900871)
chr3 (94-256)||(1910155-1910317)


Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 1893699 - 1893971
Alignment:
Q  1 agggtatttagaatcttttttctactagaaaccatttggtttggctttagagagtcatctcttatctatgaggag---------------taggagtacc 85  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||               ||||||||||    
T  1893699 agggtatttagaatcttttttctactagaaaccatttggtttggctttagagagtcatctcttatctatgtggagctttgctctgggcagtaggagtacc 1893798  T
Q  86 gttcaacggtaattttcctttttcgtaaataatacattccatttattaagtgttgctgtgttattttctccgttaggttctgggtccctgacaggctata 185  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1893799 gttcaacggtaattttcctttttcgtaaatgatacattccatttattaagtgttgctgtgttattttctccgttaggttctgggtccctgacaggctata 1893898  T
Q  186 ttgtaaatggggcatcatgaatctactatgaaagatagagcataacgacgtaatagaatccatccattaagtt 258  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1893899 ttgtaaatggggcatcgtgaatctaccatgaaagatagagcataacgacgtaatagaatccatccattaagtt 1893971  T

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Target: chr3; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 1903145 - 1903417
Alignment:
Q  1 agggtatttagaatcttttttctactagaaaccatttggtttggctttagagagtcatctcttatctatgaggag---------------taggagtacc 85  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||               ||||||||||    
T  1903145 agggtatttagaatcttttttctactagaaaccatttggtttggctttagagagtcatctcttatctatgtggagctttgctctgggcagtaggagtacc 1903244  T
Q  86 gttcaacggtaattttcctttttcgtaaataatacattccatttattaagtgttgctgtgttattttctccgttaggttctgggtccctgacaggctata 185  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1903245 gttcaacggtaattttcctttttcgtaaatgatacattccatttattaagtgttgctgtgttattttctccgttaggttctgggtccctgacaggctata 1903344  T
Q  186 ttgtaaatggggcatcatgaatctactatgaaagatagagcataacgacgtaatagaatccatccattaagtt 258  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1903345 ttgtaaatggggcatcgtgaatctaccatgaaagatagagcataacgacgtaatagaatccatccattaagtt 1903417  T

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Target: chr3; HSP #3
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 2934674 - 2934409
Alignment:
Q  1 agggtatttagaatcttttttctactagaaaccatttggtttggctttagagagtcatctcttatctatgaggag---------------taggagtacc 85  Q
    ||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||               ||||||||||    
T  2934674 agggtatttagaatcctttttctgctagaaagcatttggtttggctttagagagtaatctcttatctatgaggagctttcctctgggcagtaggagtacc 2934575  T
Q  86 gttcaacggtaattttcctttttcgtaaataatacattccatttattaagtgttgctgtgttattttctccgttaggttctgggtccctgacaggctata 185  Q
    |||||||||||||||||||||||| |||||||||||||||||||       |||||||||||||||||||||||||||||| ||||||| |||||||| |    
T  2934574 gttcaacggtaattttcctttttcataaataatacattccattt-------gttgctgtgttattttctccgttaggttctaggtccctaacaggctaca 2934482  T
Q  186 ttgtaaatggggcatcatgaatctactatgaaagatagagcataacgacgtaatagaatccatccattaagtt 258  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||    
T  2934481 ttgtaaatggggcatcatgaatctaccatgcaagatagagcataacgacataatagaatccatccattaagtt 2934409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 94 - 256
Target Start/End: Original strand, 1900709 - 1900871
Alignment:
Q  94 gtaattttcctttttcgtaaataatacattccatttattaagtgttgctgtgttattttctccgttaggttctgggtccctgacaggctatattgtaaat 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||| ||||| ||||| ||||||    
T  1900709 gtaattttcctttttcgtaaataatacattccatttattaagtgttgttgtgttattttctccgtaaggttctgggttcctaacaggatatatggtaaat 1900808  T
Q  194 ggggcatcatgaatctactatgaaagatagagcataacgacgtaatagaatccatccattaag 256  Q
    ||||| ||| |||||||| ||| ||||| |||||||||||| ||||| |||||||||||||||    
T  1900809 ggggcttcaagaatctaccatgcaagatcgagcataacgacataatataatccatccattaag 1900871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 94 - 256
Target Start/End: Original strand, 1910155 - 1910317
Alignment:
Q  94 gtaattttcctttttcgtaaataatacattccatttattaagtgttgctgtgttattttctccgttaggttctgggtccctgacaggctatattgtaaat 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||| ||||| ||||| ||||||    
T  1910155 gtaattttcctttttcgtaaataatacattccatttattaagtgttgttgtgttattttctccgtaaggttctgggttcctaacaggatatatggtaaat 1910254  T
Q  194 ggggcatcatgaatctactatgaaagatagagcataacgacgtaatagaatccatccattaag 256  Q
    ||||| ||| |||||||| ||| ||||| |||||||||||| ||||| |||||||||||||||    
T  1910255 ggggcttcaagaatctaccatgcaagatcgagcataacgacataatataatccatccattaag 1910317  T

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