View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4265_high_2 (Length: 455)

Name: NF4265_high_2
Description: NF4265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4265_high_2
NF4265_high_2
[»] chr4 (6 HSPs)
chr4 (15-318)||(48026214-48026517)
chr4 (323-455)||(48026040-48026172)
chr4 (328-428)||(39774909-39775009)
chr4 (323-455)||(18570273-18570404)
chr4 (336-455)||(45421600-45421719)
chr4 (336-376)||(25587933-25587973)
[»] chr3 (17 HSPs)
chr3 (15-322)||(52585738-52586043)
chr3 (15-318)||(53580990-53581288)
chr3 (15-266)||(20685106-20685357)
chr3 (10-258)||(4136080-4136335)
chr3 (18-192)||(8726591-8726765)
chr3 (18-192)||(9078478-9078652)
chr3 (327-455)||(20685459-20685587)
chr3 (323-455)||(52585568-52585700)
chr3 (323-455)||(53581330-53581462)
chr3 (133-269)||(39453222-39453357)
chr3 (323-438)||(39453018-39453133)
chr3 (323-377)||(25537483-25537537)
chr3 (331-455)||(8726934-8727057)
chr3 (331-455)||(9078821-9078944)
chr3 (336-452)||(42595600-42595716)
chr3 (336-375)||(17058836-17058875)
chr3 (358-418)||(3856666-3856726)
[»] chr8 (11 HSPs)
chr8 (15-318)||(10260130-10260431)
chr8 (13-270)||(8783234-8783507)
chr8 (15-150)||(9605189-9605324)
chr8 (323-455)||(10260473-10260605)
chr8 (325-455)||(17834320-17834450)
chr8 (323-438)||(8871815-8871930)
chr8 (328-447)||(8783609-8783728)
chr8 (15-70)||(16912601-16912656)
chr8 (323-365)||(9604983-9605025)
chr8 (280-322)||(17834490-17834532)
chr8 (280-316)||(9605069-9605105)
[»] chr2 (19 HSPs)
chr2 (15-322)||(18579630-18579935)
chr2 (15-318)||(5848834-5849135)
chr2 (15-322)||(15745669-15745974)
chr2 (35-270)||(33171059-33171292)
chr2 (323-442)||(18579473-18579592)
chr2 (323-452)||(5849177-5849306)
chr2 (323-455)||(15745496-15745631)
chr2 (25-192)||(36098514-36098679)
chr2 (323-455)||(36098844-36098976)
chr2 (323-374)||(33170921-33170972)
chr2 (325-394)||(30355297-30355365)
chr2 (10-50)||(40492515-40492555)
chr2 (336-455)||(3981726-3981845)
chr2 (15-70)||(5509817-5509872)
chr2 (10-49)||(19051327-19051366)
chr2 (323-405)||(19051619-19051701)
chr2 (105-205)||(19051364-19051463)
chr2 (280-316)||(30355418-30355454)
chr2 (284-320)||(33171011-33171047)
[»] chr5 (6 HSPs)
chr5 (15-321)||(17237551-17237859)
chr5 (22-262)||(32296028-32296264)
chr5 (323-455)||(32295801-32295932)
chr5 (323-455)||(17237380-17237512)
chr5 (323-455)||(20174605-20174737)
chr5 (48-152)||(20174318-20174425)
[»] chr7 (16 HSPs)
chr7 (15-271)||(13596622-13596874)
chr7 (15-322)||(23040168-23040473)
chr7 (15-270)||(48859144-48859398)
chr7 (15-322)||(22910874-22911179)
chr7 (15-270)||(26754585-26754834)
chr7 (323-455)||(26754922-26755054)
chr7 (323-455)||(13596962-13597094)
chr7 (323-455)||(23039997-23040130)
chr7 (323-455)||(22911217-22911349)
chr7 (323-455)||(15026403-15026531)
chr7 (323-455)||(48859486-48859618)
chr7 (323-389)||(23586238-23586304)
chr7 (410-452)||(47295175-47295217)
chr7 (136-201)||(26037039-26037104)
chr7 (326-410)||(3566589-3566673)
chr7 (327-375)||(28544168-28544216)
[»] chr1 (13 HSPs)
chr1 (15-270)||(44021895-44022144)
chr1 (19-270)||(32922779-32923030)
chr1 (17-270)||(30939765-30940018)
chr1 (323-455)||(42132081-42132212)
chr1 (15-253)||(43896137-43896374)
chr1 (49-192)||(39220664-39220807)
chr1 (323-445)||(44022232-44022354)
chr1 (176-318)||(42131899-42132039)
chr1 (323-454)||(32924095-32924226)
chr1 (325-390)||(12751083-12751148)
chr1 (15-72)||(42131785-42131842)
chr1 (323-418)||(27394627-27394722)
chr1 (112-198)||(26098264-26098350)
[»] chr6 (6 HSPs)
chr6 (97-322)||(15609892-15610115)
chr6 (118-270)||(5827373-5827525)
chr6 (323-455)||(15610153-15610285)
chr6 (323-454)||(5827617-5827748)
chr6 (323-454)||(3627378-3627509)
chr6 (15-48)||(15609857-15609890)
[»] scaffold0913 (3 HSPs)
scaffold0913 (118-320)||(3346-3547)
scaffold0913 (326-444)||(3590-3708)
scaffold0913 (15-71)||(3273-3329)
[»] scaffold0898 (3 HSPs)
scaffold0898 (118-320)||(2054-2255)
scaffold0898 (326-444)||(1893-2011)
scaffold0898 (15-71)||(2272-2328)


Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 15 - 318
Target Start/End: Complemental strand, 48026517 - 48026214
Alignment:
Q  15 aagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccatctttctaatagagtgagaataggaat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |    
T  48026517 aagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccagctttctaatagagtgagaataggagt 48026418  T
Q  115 ttctataagggatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaagttcttggactatcgtca 214  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  48026417 ttgtataagggatgatacatgcacttttgttttggcaaaaactgaatggtttacttcagtctgtgaggtacatgttggcgaagttcttggactatcgtca 48026318  T
Q  215 gctttagaatgggatcatcacttacacttgggacctatcgattttgagcttgatgctnnnnnnnngtggtggatagtttttcatttacacatcaggatgt 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||| ||||||||||| |||||||||||||||    
T  48026317 gctttagaatgggatcatcacttacacttgggacctatcgattttgagcttgatgctaaaaaaaaatggtgggtagtttttcatctacacatcaggatgt 48026218  T
Q  315 taca 318  Q
    ||||    
T  48026217 taca 48026214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 323 - 455
Target Start/End: Complemental strand, 48026172 - 48026040
Alignment:
Q  323 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcaacccatagattagctaatacgaccacatcttcagctagtttttag 422  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||  ||||||| |||||| |||||||||||    
T  48026172 acaatattatgtcaactctagtgttgagtttacgaggagacaagcaaatgaagcagcccatagattagctaaggcgaccacgtcttcaactagtttttag 48026073  T
Q  423 attttggtaaaaataccatattgtattgaacac 455  Q
    ||||||||| |||||||| ||||||||||||||    
T  48026072 attttggtagaaataccagattgtattgaacac 48026040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 328 - 428
Target Start/End: Original strand, 39774909 - 39775009
Alignment:
Q  328 attatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcaacccatagattagctaatacgaccacatcttcagctagtttttagatttt 427  Q
    |||||||||||| ||||||||||||| ||||||||||| ||||| |||||| |||||||||| ||||  || ||||||| ||| ||| ||||||||||||    
T  39774909 attatgtcaactttagtgttgagtttgtgaggagacaaacaaataaggcaatccatagattaactaaggcggccacatcctcaactaatttttagatttt 39775008  T
Q  428 g 428  Q
    |    
T  39775009 g 39775009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 323 - 455
Target Start/End: Complemental strand, 18570404 - 18570273
Alignment:
Q  323 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcaacccatagattagctaatacgaccacatcttcagctagtttttag 422  Q
    |||||||||| |||||||||||||||||||| |||||||||||| ||| ||| ||||  || |||||||||| ||||||||||   |   |||||| ||     
T  18570404 acaatattatatcaactctagtgttgagtttgtgaggagacaag-aaacgagacaacttatggattagctaagacgaccacattcacgattagtttctaa 18570306  T
Q  423 attttggtaaaaataccatattgtattgaacac 455  Q
    |||| | || |||||| ||||||||||||||||    
T  18570305 atttggatagaaatactatattgtattgaacac 18570273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 455
Target Start/End: Original strand, 45421600 - 45421719
Alignment:
Q  336 aactctagtgttgagtttatgaggagacaagcaaatgaggcaacccatagattagctaatacgaccacatcttcagctagtttttagattttggtaaaaa 435  Q
    ||||||||||| ||||||||  | |||||||| |||||||   |||||  |||||||||  || || |||| |||| ||||||  ||||| |||| || |    
T  45421600 aactctagtgtggagtttattcgaagacaagcgaatgaggttgcccatgaattagctaaggcggcctcatcatcagttagtttccagattctggttaata 45421699  T
Q  436 taccatattgtattgaacac 455  Q
    ||||||| ||||||||||||    
T  45421700 taccataatgtattgaacac 45421719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 376
Target Start/End: Original strand, 25587933 - 25587973
Alignment:
Q  336 aactctagtgttgagtttatgaggagacaagcaaatgaggc 376  Q
    |||||||||||||||||| |  |||||||||||||||||||    
T  25587933 aactctagtgttgagtttgttcggagacaagcaaatgaggc 25587973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 15 - 322
Target Start/End: Complemental strand, 52586043 - 52585738
Alignment:
Q  15 aagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccatctttctaatagagtgagaataggaat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| || |    
T  52586043 aagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccagctttctaatagagtgggaataagagt 52585944  T
Q  115 ttctataagggatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaagttcttggactatcgtca 214  Q
    || |||||| |||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||| ||||    
T  52585943 ttgtataagagatgatacagacacttttgttttggcaaaaactgaatggtttactccagtatgtgaggtacatgttgacgaagctcttggactattgtca 52585844  T
Q  215 gctttagaatgggatcatcacttacacttgggacctatcgattttgagcttgatgctnnnnnnnngtggtggatagtttttcatttacacatcaggatgt 314  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |        ||||||||||||||||||| | |||||||||||||    
T  52585843 gctttagaatgggttcatcacttacacttgggacctatcgattttgagcttgatgtt--aaaaaagtggtggatagtttttcatctgcacatcaggatgt 52585746  T
Q  315 tacagaat 322  Q
    ||||||||    
T  52585745 tacagaat 52585738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 15 - 318
Target Start/End: Original strand, 53580990 - 53581288
Alignment:
Q  15 aagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccatctttctaatagagtgagaataggaat 114  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||     ||||||||||| |||||||| |    
T  53580990 aagaaggaaatgtgaaatgggtcaaaccagctcaaggaagatttaagtgcaatattgatgcttctttctcaca----cctaatagagtgggaataggagt 53581085  T
Q  115 ttctata-agggatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaagttcttggactatcgtc 213  Q
    || |||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||| | |  ||    
T  53581086 ttgtatataaggatgatacatgcacttttgttttggcaaaaactgaatggtttactctagtctgtgaggtacatgttggtgaagctcttggattgttatc 53581185  T
Q  214 agctttagaatgggatcatcacttacacttgggacctatcgattttgagcttgatgctnnnnnnnngtggtggatagtttttcatttacacatcaggatg 313  Q
    |||||| ||||||| |||||| ||||||||| || ||||| |||||||||| ||||          ||||||||||||||||||||| ||| ||||||||    
T  53581186 agctttggaatgggttcatcaattacacttgagaactatcaattttgagctagatg--tcaaaaaagtggtggatagtttttcatttgcacgtcaggatg 53581283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 15 - 266
Target Start/End: Original strand, 20685106 - 20685357
Alignment:
Q  15 aagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccatctttctaatagagtgagaataggaat 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  || ||||||||||||||| |||||| | |    
T  20685106 aagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgtttctttcttacaactttctaatagagtgggaatagcagt 20685205  T
Q  115 ttctataagggatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaagttcttggactatcgtca 214  Q
    || ||||||||||| ||||| ||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||  ||| ||||||| | |  |||    
T  20685206 ttgtataagggatgttacattcacttttgtttcggcaaaaactgaatcgtttactccagtatgtgaggtacatgttggtcaagctcttggattgttatca 20685305  T
Q  215 gctttagaatgggatcatcacttacacttgggacctatcgattttgagcttg 266  Q
     |||| ||||||  |||||| |||||||||||||| ||| ||||||||||||    
T  20685306 actttggaatggattcatcaattacacttgggaccaatcaattttgagcttg 20685357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 10 - 258
Target Start/End: Original strand, 4136080 - 4136335
Alignment:
Q  10 gtgagaagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccatctttctaatagagtgagaata 109  Q
    |||| ||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||  |||||||||| | ||||||||||||||| | |||    
T  4136080 gtgacaagaaggaaatgtgaaatggaccaaacaagctgaaggaagatttaagtgtaatattgatatttctttctcctagctttctaatagagtgggtata 4136179  T
Q  110 ggaatttctataagggatgatacatgc-------acttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaagttctt 202  Q
     || ||| |||||||||||||||||||       | |||| || | |||||||| |||||||||||| |||| |||||||||||||||||||||| ||||    
T  4136180 agagtttgtataagggatgatacatgcaatttttattttttttatagcaaaaaccgaatggtttactgcagtatgtgaggtacatgttggcgaagctctt 4136279  T
Q  203 ggactatcgtcagctttagaatgggatcatcacttacacttgggacctatcgattt 258  Q
    ||| | |  |||||||||||||||| |||||| ||||| |||||||||||||||||    
T  4136280 ggattgttatcagctttagaatgggttcatcaattacatttgggacctatcgattt 4136335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 8726591 - 8726765
Alignment:
Q  18 aaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccatctttctaatagagtgagaataggaatttc 117  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||| |||||  || |||| ||||| | || ||||| || |||     
T  8726591 aaggaaatgtgaaatagatcaaaccagctgaaggaagatttaagtgcaaaattgatacttatttctttcaactttttaataaaatgggaatatgagtttg 8726690  T
Q  118 tataagggatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttgg 192  Q
    |||||||||||||| ||||||||| ||||||||||||| |||||||||||||||| || |||||| |||||||||    
T  8726691 tataagggatgatatatgcactttcgttttggcaaaaaatgaatggtttactccaatccgtgaggaacatgttgg 8726765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 9078478 - 9078652
Alignment:
Q  18 aaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccatctttctaatagagtgagaataggaatttc 117  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||| |||||  || |||| ||||| | || ||||| || |||     
T  9078478 aaggaaatgtgaaatagatcaaaccagctgaaggaagatttaagtgcaaaattgatacttatttctttcaactttttaataaaatgggaatatgagtttg 9078577  T
Q  118 tataagggatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttgg 192  Q
    |||||||||||||| ||||||||| ||||||||||||| |||||||||||||||| || |||||| |||||||||    
T  9078578 tataagggatgatatatgcactttcgttttggcaaaaaatgaatggtttactccaatccgtgaggaacatgttgg 9078652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 327 - 455
Target Start/End: Original strand, 20685459 - 20685587
Alignment:
Q  327 tattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcaacccatagattagctaatacgaccacatcttcagctagtttttagattt 426  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||   |||||||||||||||||||||  | ||||    
T  20685459 tattatgtcaactctagtgttgagtttgtgaggagacaagcaaatgagacagcccatagattagctaaggagaccacatcttcagctagtttccaaattt 20685558  T
Q  427 tggtaaaaataccatattgtattgaacac 455  Q
    || || |||||||| ||||||||||||||    
T  20685559 tgatagaaataccagattgtattgaacac 20685587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 323 - 455
Target Start/End: Complemental strand, 52585700 - 52585568
Alignment:
Q  323 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcaacccatagattagctaatacgaccacatcttcagctagtttttag 422  Q
    ||||||||||||||||||||||||||||||  ||| ||||||||||||||||||| ||||||||||| ||||  || ||||||| |||||||||||  ||    
T  52585700 acaatattatgtcaactctagtgttgagttcgtgatgagacaagcaaatgaggcagcccatagattaactaaggcggccacatcctcagctagtttccag 52585601  T
Q  423 attttggtaaaaataccatattgtattgaacac 455  Q
    ||||||||| ||||| |  ||||||||||||||    
T  52585600 attttggtagaaatatcggattgtattgaacac 52585568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 323 - 455
Target Start/End: Original strand, 53581330 - 53581462
Alignment:
Q  323 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcaacccatagattagctaatacgaccacatcttcagctagtttttag 422  Q
    |||||||||||||||||||||| |||||||| | ||||||||||||||||||||| |||||||||||| |||   | |||||| |||  ||||||| |||    
T  53581330 acaatattatgtcaactctagttttgagtttgtaaggagacaagcaaatgaggcagcccatagattagataaggaggccacattttctactagtttctag 53581429  T
Q  423 attttggtaaaaataccatattgtattgaacac 455  Q
    |||||||||||| || |||||||||||||||||    
T  53581430 attttggtaaaattatcatattgtattgaacac 53581462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 133 - 269
Target Start/End: Complemental strand, 39453357 - 39453222
Alignment:
Q  133 atgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaagttcttggactatcgtcagctttagaatgggatcat 232  Q
    ||||||||||||| ||| ||| |||||||| ||||||| |||| |||||||| |||||||||||| |||| || | |  ||||||||||||| || ||||    
T  39453357 atgcacttttgttatggtaaagactgaatgatttactctagtccgtgaggtatatgttggcgaagctcttagattgttatcagctttagaat-ggttcat 39453259  T
Q  233 cacttacacttgggacctatcgattttgagcttgatg 269  Q
     | ||||| ||| ||||||||||||||||||||||||    
T  39453258 taattacatttgagacctatcgattttgagcttgatg 39453222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 323 - 438
Target Start/End: Complemental strand, 39453133 - 39453018
Alignment:
Q  323 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcaacccatagattagctaatacgaccacatcttcagctagtttttag 422  Q
    |||||||||||||||||||| ||| || ||| ||||||||||| |||||||| ||  ||||||||||||||  ||| | | ||| | |||||  ||| ||    
T  39453133 acaatattatgtcaactctaatgtggactttgtgaggagacaaacaaatgagtcagtccatagattagctacaacggctatatcctaagctaactttcag 39453034  T
Q  423 attttggtaaaaatac 438  Q
    ||||||||||||||||    
T  39453033 attttggtaaaaatac 39453018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 377
Target Start/End: Complemental strand, 25537537 - 25537483
Alignment:
Q  323 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggca 377  Q
    ||||| |||| | |||||||||||||||||| || ||||||||||||||||||||    
T  25537537 acaattttatttaaactctagtgttgagtttgtgcggagacaagcaaatgaggca 25537483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 455
Target Start/End: Original strand, 8726934 - 8727057
Alignment:
Q  331 atgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcaacccatagattagctaatacgaccacatcttcagctagtttttagattttggt 430  Q
    ||||||||||| | |||||||| ||||||||| ||  ||||||| ||| | | ||||||| |||  ||  ||||||||||  ||||||| ||||||| ||    
T  8726934 atgtcaactcttgagttgagttgatgaggagaaaaa-aaatgagacaatcgaaagattaggtaaggcggacacatcttcaaatagttttcagatttttgt 8727032  T
Q  431 aaaaataccatattgtattgaacac 455  Q
    | ||| |||| ||||||||||||||    
T  8727033 agaaaaaccagattgtattgaacac 8727057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 455
Target Start/End: Original strand, 9078821 - 9078944
Alignment:
Q  331 atgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcaacccatagattagctaatacgaccacatcttcagctagtttttagattttggt 430  Q
    ||||||||||| | |||||||| ||||||||| ||  ||||||| ||| | | ||||||| |||  ||  ||||||||||  ||||||| ||||||| ||    
T  9078821 atgtcaactcttgagttgagttgatgaggagaaaaa-aaatgagacaatcgaaagattaggtaaggcggacacatcttcaaatagttttcagatttttgt 9078919  T
Q  431 aaaaataccatattgtattgaacac 455  Q
    | ||| |||| ||||||||||||||    
T  9078920 agaaaaaccagattgtattgaacac 9078944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 336 - 452
Target Start/End: Complemental strand, 42595716 - 42595600
Alignment:
Q  336 aactctagtgttgagtttatgaggagacaagcaaatgaggcaacccatagattagctaatacgaccacatcttcagctagtttttagattttggtaaaaa 435  Q
    ||||| ||||| |||||| ||||||||||||||||||| ||  | |||| |||| ||||  || ||||||  |||| ||||||| ||||||| || ||||    
T  42595716 aactcaagtgtagagtttgtgaggagacaagcaaatgaagctcctcataaattaactaaggcggccacattatcagttagttttcagatttttgttaaaa 42595617  T
Q  436 taccatattgtattgaa 452  Q
    ||||  | |||||||||    
T  42595616 taccggaatgtattgaa 42595600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 375
Target Start/End: Complemental strand, 17058875 - 17058836
Alignment:
Q  336 aactctagtgttgagtttatgaggagacaagcaaatgagg 375  Q
    |||||||||||||||||| || ||||||||||||||||||    
T  17058875 aactctagtgttgagtttgtgcggagacaagcaaatgagg 17058836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 418
Target Start/End: Complemental strand, 3856726 - 3856666
Alignment:
Q  358 ggagacaagcaaatgaggcaacccatagattagctaatacgaccacatcttcagctagttt 418  Q
    |||||||||||| |||| |||| |||||||||| |||| || ||||||  |||||||||||    
T  3856726 ggagacaagcaagtgagacaactcatagattagttaatgcggccacattctcagctagttt 3856666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 191; Significance: 1e-103; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 15 - 318
Target Start/End: Original strand, 10260130 - 10260431
Alignment:
Q  15 aagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccatctttctaatagagtgagaataggaat 114  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||| ||||||| |||||||| |    
T  10260130 aagaaggaaatgtgaaattgatcaaaccagctgaaggaagatttaagtccaatattgatgcttctttctcctaactttctactagagtgggaataggagt 10260229  T
Q  115 ttctataagggatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaagttcttggactatcgtca 214  Q
    || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||   ||    
T  10260230 ttgtataagggatgatacatgcacttttgttttggtaaaaactgaatggtttactccagtttgtgaggtacatgttggcgaagctcttggactatttcca 10260329  T
Q  215 gctttagaatgggatcatcacttacacttgggacctatcgattttgagcttgatgctnnnnnnnngtggtggatagtttttcatttacacatcaggatgt 314  Q
    ||||||||||||| |||||||||| | || |||||||||||||||||||||||||||        ||||||||||||||||||| | ||||||| |||||    
T  10260330 gctttagaatgggttcatcacttataattaggacctatcgattttgagcttgatgct--aaaaaagtggtggatagtttttcatctgcacatcatgatgt 10260427  T
Q  315 taca 318  Q
    ||||    
T  10260428 taca 10260431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 13 - 270
Target Start/End: Original strand, 8783234 - 8783507
Alignment:
Q  13 agaagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccat--------------ctttctaata 98  Q
    ||||||||||| |||||||||||||||||||| |||||  |||||||||||||||||||||| |||||| |||||               ||||||||||    
T  8783234 agaagaaggaattgtgaaatggatcaaaccagttgaagagagatttaagtgcaatattgatgtttctttatcccaattttttaatcccaactttctaata 8783333  T
Q  99 gagtgagaataggaatttctataagggatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaagt 198  Q
    ||||| ||||| || ||| || |||||| |||||| |||||||| ||||| ||||||||||| ||||||||| ||| ||| | |||||||||||| ||      
T  8783334 gagtgggaatatgagtttgtagaagggacgatacaagcacttttattttgacaaaaactgaacggtttactctagtatgtaatgtacatgttggccaaac 8783433  T
Q  199 tcttggactatcgtcagctttaga--atgggatcatcacttacacttgggacctatcgattttgagcttgatgc 270  Q
    ||||||| | |  ||| ||||| |  ||||| |||||| |||||||||||||||||  |||||||| |||||||    
T  8783434 tcttggattgttatcaactttataatatgggttcatcaattacacttgggacctatgaattttgagtttgatgc 8783507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 15 - 150
Target Start/End: Complemental strand, 9605324 - 9605189
Alignment:
Q  15 aagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccatctttctaatagagtgagaataggaat 114  Q
    |||||| ||||||||||| |||||||||||||||| ||| ||||||||||||||||||||  ||||||||||| |||| || ||||||| ||||| || |    
T  9605324 aagaagaaaatgtgaaattgatcaaaccagctgaaagaatatttaagtgcaatattgatgactctttctcccaactttttattagagtgggaataagagt 9605225  T
Q  115 ttctataagggatgatacatgcacttttgttttggc 150  Q
    || ||||||||||||||||  |||||||||||||||    
T  9605224 ttgtataagggatgatacaaacacttttgttttggc 9605189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 323 - 455
Target Start/End: Original strand, 10260473 - 10260605
Alignment:
Q  323 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcaacccatagattagctaatacgaccacatcttcagctagtttttag 422  Q
    |||||| |||||||||||||||||||||||| ||| ||||||||||||||||| | |||||||||| |||||  || ||||||| |   ||||||| |||    
T  10260473 acaatactatgtcaactctagtgttgagtttctgaagagacaagcaaatgaggtagcccatagatttgctaaggcggccacatccttgactagtttctag 10260572  T
Q  423 attttggtaaaaataccatattgtattgaacac 455  Q
    |||||||||||||||||| ||||||||||||||    
T  10260573 attttggtaaaaataccagattgtattgaacac 10260605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 325 - 455
Target Start/End: Complemental strand, 17834450 - 17834320
Alignment:
Q  325 aatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcaacccatagattagctaatacgaccacatcttcagctagtttttagat 424  Q
    |||| |||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||  || ||||||| |||||||||||  ||||    
T  17834450 aatactatgtcaactctagtgttgagtttgtgaggagacaaacaaatgagacaacccatagattagctaaggcggccacatcctcagctagtttccagat 17834351  T
Q  425 tttggtaaaaataccatattgtattgaacac 455  Q
    |||| || ||||| || | ||||||||||||    
T  17834350 tttgatagaaatatcagaatgtattgaacac 17834320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 323 - 438
Target Start/End: Complemental strand, 8871930 - 8871815
Alignment:
Q  323 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcaacccatagattagctaatacgaccacatcttcagctagtttttag 422  Q
    |||||||||||| |||| ||||||||||||| |||||| |||||||||||||| | |||||| |||||||||  |||||||||| |||||| ||||  ||    
T  8871930 acaatattatgttaactttagtgttgagtttgtgaggatacaagcaaatgaggtagcccataaattagctaaggcgaccacatcatcagcttgtttcaag 8871831  T
Q  423 attttggtaaaaatac 438  Q
    ||||||||| ||||||    
T  8871830 attttggtagaaatac 8871815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 328 - 447
Target Start/End: Original strand, 8783609 - 8783728
Alignment:
Q  328 attatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcaacccatagattagctaatacgaccacatcttcagctagtttttagatttt 427  Q
    |||||||  ||||||||||||||||| ||| |||||||| ||| |||||| ||||||||||||||||  ||||||||||| || || |||| ||||||||    
T  8783609 attatgttgactctagtgttgagtttgtgacgagacaaggaaacgaggcagcccatagattagctaaggcgaccacatctccaacttgtttctagatttt 8783708  T
Q  428 ggtaaaaataccatattgta 447  Q
    |||| |||||| | ||||||    
T  8783709 ggtagaaatactagattgta 8783728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 16912656 - 16912601
Alignment:
Q  15 aagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatatt 70  Q
    |||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||    
T  16912656 aagaaggaaatgtgaaatggatcaaatcagcttaagaaagatttaagtgcaatatt 16912601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 365
Target Start/End: Complemental strand, 9605025 - 9604983
Alignment:
Q  323 acaatattatgtcaactctagtgttgagtttatgaggagacaa 365  Q
    |||||||||| |||||||||||||||||||| |||||||||||    
T  9605025 acaatattatatcaactctagtgttgagtttgtgaggagacaa 9604983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 322
Target Start/End: Complemental strand, 17834532 - 17834490
Alignment:
Q  280 gtggtggatagtttttcatttacacatcaggatgttacagaat 322  Q
    ||||||||||||||||||| | |||||||||||||||||||||    
T  17834532 gtggtggatagtttttcatctgcacatcaggatgttacagaat 17834490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 9605105 - 9605069
Alignment:
Q  280 gtggtggatagtttttcatttacacatcaggatgtta 316  Q
    ||||||||||||||||||||| ||||||| |||||||    
T  9605105 gtggtggatagtttttcatttgcacatcaagatgtta 9605069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 322
Target Start/End: Complemental strand, 18579935 - 18579630
Alignment:
Q  15 aagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccatctttctaatagagtgagaataggaat 114  Q
    |||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||| |    
T  18579935 aagaaggaaatgtgaaatggatcaaaccagcgaaaggaagatttaaatgcaatattgatgcttctttctcccagctttctaatagagtgggaataggagt 18579836  T
Q  115 ttctataagggatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaagttcttggactatcgtca 214  Q
    || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| | |  |||    
T  18579835 ttgtataagggatgatacaggcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgtttgcgaagctcttggattgttatca 18579736  T
Q  215 gctttagaatgggatcatcacttacacttgggacctatcgattttgagcttgatgctnnnnnnnngtggtggatagtttttcatttacacatcaggatgt 314  Q
    ||||| ||||| | |||||| |||||||||||||||||||||||||||||||||||         ||||||||||||||||||| | ||| ||||| |||    
T  18579735 gctttggaatgagttcatcaattacacttgggacctatcgattttgagcttgatgc--caaaaaagtggtggatagtttttcatctgcacgtcaggttgt 18579638  T
Q  315 tacagaat 322  Q
    ||||||||    
T  18579637 tacagaat 18579630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 15 - 318
Target Start/End: Original strand, 5848834 - 5849135
Alignment:
Q  15 aagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccatctttctaatagagtgagaataggaat 114  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |    
T  5848834 aagaaggaaatgtgaaatggatcaaactagctgaaggaagatttaagtgcaatattgatgcttctttctcccagctttctaatagagtgggaataggagt 5848933  T
Q  115 ttctataagggatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaagttcttggactatcgtca 214  Q
    || |||||| |||||||||||||||||||||||| ||||| |  |||||||||||||||||||||||||||||||| |||||| |||||||||||   ||    
T  5848934 ttgtataagagatgatacatgcacttttgttttgacaaaagcataatggtttactccagtctgtgaggtacatgttagcgaagctcttggactattaaca 5849033  T
Q  215 gctttagaatgggatcatcacttacacttgggacctatcgattttgagcttgatgctnnnnnnnngtggtggatagtttttcatttacacatcaggatgt 314  Q
     ||||| |||||  |||||||||||| || |||| ||||||||||||  ||||||||        |||||||||| |||||||| |||||||||||||||    
T  5849034 actttaaaatggattcatcacttacaattaggacatatcgattttgaatttgatgct--aagaaagtggtggataatttttcatctacacatcaggatgt 5849131  T
Q  315 taca 318  Q
    ||||    
T  5849132 taca 5849135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 15 - 322
Target Start/End: Complemental strand, 15745974 - 15745669
Alignment:
Q  15 aagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccatctttctaatagagtgagaataggaat 114  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||    ||||||||||||||| |||||||| |    
T  15745974 aagaaggaaatgtgaaatggatcaaaccagttgaagggagatttaagtgcaatattgatgcttttttctctatgctttctaatagagtgggaataggagt 15745875  T
Q  115 ttctataagggatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaagttcttggactatcgtca 214  Q
     | |||||| ||||||||| | ||||||||||||| ||||||||||||| |||||||||||| |||||| ||||||||||||| |||| || | |  |||    
T  15745874 ctgtataagagatgatacaggtacttttgttttggtaaaaactgaatggcttactccagtctatgaggtgcatgttggcgaagctcttagattgttatca 15745775  T
Q  215 gctttagaatgggatcatcacttacacttgggacctatcgattttgagcttgatgctnnnnnnnngtggtggatagtttttcatttacacatcaggatgt 314  Q
    ||||| ||||||| |||||| |||||||||||| ||||||||||||||||||||||         ||||||||||||||||||| | ||| | |||||||    
T  15745774 gctttggaatgggttcatcaattacacttgggatctatcgattttgagcttgatgc--caaaaacgtggtggatagtttttcatctgcacgttaggatgt 15745677  T
Q  315 tacagaat 322  Q
    ||||||||    
T  15745676 tacagaat 15745669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 35 - 270
Target Start/End: Complemental strand, 33171292 - 33171059
Alignment:
Q  35 atcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccatctttctaatagagtgagaataggaatttctataagggatgatacat 134  Q
    ||||||||| || ||| || |||||||| ||||||||||| ||||||||||||||||||||||||||||  ||||||| ||| ||||||||||||  |||    
T  33171292 atcaaaccaactaaagaaatatttaagtacaatattgatgtttctttctcccatctttctaatagagtggtaataggagtttgtataagggatga--cat 33171195  T
Q  135 gcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaagttcttggactatcgtcagctttagaatgggatcatca 234  Q
     ||||||||||||||| ||||||||||||||||||| | ||| |||||||||||||||||||| ||||||| | |  |||| ||||||||| | | ||||    
T  33171194 acacttttgttttggctaaaactgaatggtttactctaatctctgaggtacatgttggcgaagctcttggattgttatcagatttagaatgagtttatca 33171095  T
Q  235 cttacacttgggacctatcgattttgagcttgatgc 270  Q
     ||||||||||  |||||||||||||||||||||||    
T  33171094 attacacttggttcctatcgattttgagcttgatgc 33171059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 323 - 442
Target Start/End: Complemental strand, 18579592 - 18579473
Alignment:
Q  323 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcaacccatagattagctaatacgaccacatcttcagctagtttttag 422  Q
    ||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||   | |||||||||||||||||||  ||    
T  18579592 acaatattatgtcaactttagtgttgagtttgtgaggagacaaacaaatgaggcagcccatagattagctaagtaggccacatcttcagctagtttccag 18579493  T
Q  423 attttggtaaaaataccata 442  Q
    |||||| || ||||||||||    
T  18579492 attttgatagaaataccata 18579473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 323 - 452
Target Start/End: Original strand, 5849177 - 5849306
Alignment:
Q  323 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcaacccatagattagctaatacgaccacatcttcagctagtttttag 422  Q
    ||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||| | |||||||||||| |  |  ||||||| ||| |||||||| ||    
T  5849177 acaatgttatgtcaactctagtgttgagtttgtgaggagacaaacaaatgaggcagctcatagattagctgaggcagccacatcctcaactagttttcag 5849276  T
Q  423 attttggtaaaaataccatattgtattgaa 452  Q
    ||||||||| |||| ||  |||||||||||    
T  5849277 attttggtagaaatgcccgattgtattgaa 5849306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 323 - 455
Target Start/End: Complemental strand, 15745631 - 15745496
Alignment:
Q  323 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcaacccatagatta---gctaatacgaccacatcttcagctagtttt 419  Q
    |||||||||||||||||||  |||||| ||| | |||||||||||||||||| || |||||||||||   |||||   | |||||||||||||||||||     
T  15745631 acaatattatgtcaactcttatgttgaatttgtaaggagacaagcaaatgagacagcccatagattattagctaaggaggccacatcttcagctagtttc 15745532  T
Q  420 tagattttggtaaaaataccatattgtattgaacac 455  Q
     ||||||| ||| |||||||| ||||||||||||||    
T  15745531 cagattttagtagaaataccagattgtattgaacac 15745496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 25 - 192
Target Start/End: Original strand, 36098514 - 36098679
Alignment:
Q  25 tgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccatctttctaatagagtgagaataggaatttctataagg 124  Q
    |||||||||||| ||||||  ||||||| ||||||||||||||||| ||| || ||||||| |   | ||||||||||  |||||||| |||  |||||     
T  36098514 tgtgaaatggattaaaccaagtgaaggatgatttaagtgcaatattaatgtttttttctcctaatatactaatagagttggaataggagtttgcataaga 36098613  T
Q  125 gatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttgg 192  Q
    |||||||||  || ||||||||||| ||||| ||||  |||||||||||  | |||||||||||||||    
T  36098614 gatgatacacacatttttgttttggtaaaaattgaagagtttactccag--tatgaggtacatgttgg 36098679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 323 - 455
Target Start/End: Original strand, 36098844 - 36098976
Alignment:
Q  323 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcaacccatagattagctaatacgaccacatcttcagctagtttttag 422  Q
    |||||||||||| ||||  ||||||||||||||||| |||||||||||||| ||||| |||||||||| ||| |||  |||| | ||||||| ||| | |    
T  36098844 acaatattatgttaactaaagtgttgagtttatgagaagacaagcaaatgatgcaactcatagattagttaagacggtcacaacctcagctaatttctcg 36098943  T
Q  423 attttggtaaaaataccatattgtattgaacac 455  Q
    ||||| ||| |||||| | ||||| ||||||||    
T  36098944 atttttgtataaatactagattgtgttgaacac 36098976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 323 - 374
Target Start/End: Complemental strand, 33170972 - 33170921
Alignment:
Q  323 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgag 374  Q
    |||||||||||||||||||||| |||||||  ||||||||||||||||||||    
T  33170972 acaatattatgtcaactctagttttgagttcttgaggagacaagcaaatgag 33170921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 325 - 394
Target Start/End: Complemental strand, 30355365 - 30355297
Alignment:
Q  325 aatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcaacccatagattagctaa 394  Q
    ||||||||||||| ||||||||||||||| ||| ||||||||||||||| |||||  |||||| ||||||    
T  30355365 aatattatgtcaa-tctagtgttgagtttgtgaagagacaagcaaatgaagcaacatatagatcagctaa 30355297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 40492555 - 40492515
Alignment:
Q  10 gtgagaagaaggaaatgtgaaatggatcaaaccagctgaag 50  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  40492555 gtgacaagaaggaaatgtgaaatggatcaaaccagctgaag 40492515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 455
Target Start/End: Complemental strand, 3981845 - 3981726
Alignment:
Q  336 aactctagtgttgagtttatgaggagacaagcaaatgaggcaacccatagattagctaatacgaccacatcttcagctagtttttagattttggtaaaaa 435  Q
    ||||||||||| ||||||||  |||||||||| |||||||   |||||  |||||||||  || || |||| |||||||||||  ||||| |||| || |    
T  3981845 aactctagtgtggagtttattcggagacaagcgaatgaggttgcccatgaattagctaaggcggcctcatcatcagctagtttccagattctggttaata 3981746  T
Q  436 taccatattgtattgaacac 455  Q
    ||||| | ||||||||||||    
T  3981745 taccagaatgtattgaacac 3981726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 5509817 - 5509872
Alignment:
Q  15 aagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatatt 70  Q
    |||||| ||||||||||||||| |||| ||||||| |||||||||| |||||||||    
T  5509817 aagaagaaaatgtgaaatggataaaactagctgaaagaagatttaaatgcaatatt 5509872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 19051327 - 19051366
Alignment:
Q  10 gtgagaagaaggaaatgtgaaatggatcaaaccagctgaa 49  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  19051327 gtgacaagaaggaaatgtgaaatggatcaaaccagctgaa 19051366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 405
Target Start/End: Original strand, 19051619 - 19051701
Alignment:
Q  323 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcaacccatagattagctaatacgaccacat 405  Q
    ||||||||| | ||||| || |||||||||| ||| |||||||| |||||| ||| || |||||||||||||  |||||||||    
T  19051619 acaatattacgacaactataatgttgagtttgtgaagagacaagaaaatgaagcagccaatagattagctaaagcgaccacat 19051701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 205
Target Start/End: Original strand, 19051364 - 19051463
Alignment:
Q  105 gaataggaatttctataagggatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaagttcttgg 204  Q
    ||||| || ||| ||||| |||| |||||  || ||||||||||| |||||||||||| | |||||||||||| || ||||||||| |||||  ||||||    
T  19051364 gaatatgagtttgtataaaggataatacagacaattttgttttggaaaaaactgaatgatctactccagtctgcga-gtacatgttagcgaaactcttgg 19051462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 30355454 - 30355418
Alignment:
Q  280 gtggtggatagtttttcatttacacatcaggatgtta 316  Q
    ||||||||||||||||||||| ||||||| |||||||    
T  30355454 gtggtggatagtttttcatttgcacatcatgatgtta 30355418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 320
Target Start/End: Complemental strand, 33171047 - 33171011
Alignment:
Q  284 tggatagtttttcatttacacatcaggatgttacaga 320  Q
    ||||||||||||||| | |||||||||||||||||||    
T  33171047 tggatagtttttcatctgcacatcaggatgttacaga 33171011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 173; Significance: 7e-93; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 15 - 321
Target Start/End: Complemental strand, 17237859 - 17237551
Alignment:
Q  15 aagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccatctttctaatagagtgagaataggaat 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| | ||||||||||||||| ||||| || |    
T  17237859 aagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaaatgcaatattgttgcttctttctcctagctttctaatagagtgggaatatgagt 17237760  T
Q  115 ttctataagggatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgag----gtacatgttggcgaagttcttggactatc 210  Q
    || ||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||| |||||     ||||||||| ||||||||||| ||| |     
T  17237759 ttgtataagggatgatacagacacttttgttttggcaaaaactgaatggtttaccccagtcggtgagatacatacatgttgacgaagttcttgaactgtt 17237660  T
Q  211 gtcagctttagaatgggatcatcacttacacttgggacctatcgattttgagcttgatgctnnnnnnnngtggtggatagtttttcatttacacatcagg 310  Q
     |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||        ||||||||||||||||||| | ||||||| |    
T  17237659 atcagctttagaatgggttcatcacttacacttgggacctatcgattttgagcttgacgct--agaaaagtggtggatagtttttcatctccacatcatg 17237562  T
Q  311 atgttacagaa 321  Q
    |||||||||||    
T  17237561 atgttacagaa 17237551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 22 - 262
Target Start/End: Complemental strand, 32296264 - 32296028
Alignment:
Q  22 aaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccatctttctaatagagtgagaataggaatttctata 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||  |||||||||||| | |||||||| ||| ||||    
T  32296264 aaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctaacaattttctaatagagggggaataggagtttgtata 32296165  T
Q  122 agggatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaagttcttggactatcgtcagctttag 221  Q
    | ||||||     |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| | |  |||  ||| |    
T  32296164 atggatgag----gcacttttattttggcaaaaactgaatggtttactccagtccgtgaggtacatgttggcgaagctcttggattgttatcatttttgg 32296069  T
Q  222 aatgggatcatcacttacacttgggacctatcgattttgag 262  Q
    |||| | |||||| |||||||||||||||||||||||||||    
T  32296068 aatgagttcatcaattacacttgggacctatcgattttgag 32296028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 323 - 455
Target Start/End: Complemental strand, 32295932 - 32295801
Alignment:
Q  323 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcaacccatagattagctaatacgaccacatcttcagctagtttttag 422  Q
    ||||||| ||||||||||||||||||||||| |||| |||||| |||||||||| | |||||||||||||||    ||||||||||||||||||||  ||    
T  32295932 acaatatcatgtcaactctagtgttgagtttgtgagaagacaaacaaatgaggc-agccatagattagctaaggataccacatcttcagctagtttccag 32295834  T
Q  423 attttggtaaaaataccatattgtattgaacac 455  Q
    |||||| || ||||| || ||||||||||||||    
T  32295833 attttgatagaaatatcagattgtattgaacac 32295801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 323 - 455
Target Start/End: Complemental strand, 17237512 - 17237380
Alignment:
Q  323 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcaacccatagattagctaatacgaccacatcttcagctagtttttag 422  Q
    |||||| |||||||||||||||||||||||| ||||||| ||| ||||||||||| | ||||||| || |||   | ||||||| |||||||||||  ||    
T  17237512 acaatactatgtcaactctagtgttgagtttgtgaggaggcaaacaaatgaggcagcacatagataagttaaggaggccacatcctcagctagtttccag 17237413  T
Q  423 attttggtaaaaataccatattgtattgaacac 455  Q
    ||||||||| |||||||| ||| ||||||||||    
T  17237412 attttggtataaataccagattatattgaacac 17237380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 323 - 455
Target Start/End: Original strand, 20174605 - 20174737
Alignment:
Q  323 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcaacccatagattagctaatacgaccacatcttcagctagtttttag 422  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||||  || ||   | ||||| |||  || || ||| |||||||||||| |||    
T  20174605 acaatattatgtcaattctagtgttgagtttgtgaggagacaagcaaatgaaacagcctgcatattagttaaggcggccgcattttcagctagtttctag 20174704  T
Q  423 attttggtaaaaataccatattgtattgaacac 455  Q
    |||||| || ||||| || ||||||||||||||    
T  20174705 attttgatagaaatatcagattgtattgaacac 20174737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 48 - 152
Target Start/End: Original strand, 20174318 - 20174425
Alignment:
Q  48 aaggaagatttaagtgcaatattgatgcttctttctcccat---ctttctaatagagtgagaataggaatttctataagggatgatacatgcacttttgt 144  Q
    |||||| |||||||||||||||| ||| |||||||| | |    |||||||||| || | ||||| || ||| ||||||||||||||||| |||||||||    
T  20174318 aaggaaaatttaagtgcaatattaatgtttctttcttctagtaactttctaataaagcgggaataagagtttgtataagggatgatacatacacttttgt 20174417  T
Q  145 tttggcaa 152  Q
    ||||||||    
T  20174418 tttggcaa 20174425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 164; Significance: 2e-87; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 15 - 271
Target Start/End: Original strand, 13596622 - 13596874
Alignment:
Q  15 aagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccatctttctaatagagtgagaataggaat 114  Q
    ||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| | |    
T  13596622 aagaaggaaatgtgaaatggatcaagccagttaaaggaagatttaagtgcaatattgatgcttctttctcccagctttctaatagagtgggaatagaagt 13596721  T
Q  115 ttctataagggatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaagttcttggactatcgtca 214  Q
    || |||||| |||||     ||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||| |  |||    
T  13596722 ttgtataagagatgag----gcaattttgttttggcaaaaactgaatggtttactcgagtctgggaggtacatgttggcgaagctcttggactgttatca 13596817  T
Q  215 gctttagaatgggatcatcacttacacttgggacctatcgattttgagcttgatgct 271  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  13596818 gctttagaatgggttcatcagttacacttgggacctatcgattttgagcttgatgct 13596874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 15 - 322
Target Start/End: Complemental strand, 23040473 - 23040168
Alignment:
Q  15 aagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccatctttctaatagagtgagaataggaat 114  Q
    ||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||  | ||||||||||||||| |||||||| |    
T  23040473 aagaaggaaatgtgaaatgaatcaaaccagctcaaggaagattttagtgcaatattgatgcttctttctcatagctttctaatagagtgggaataggagt 23040374  T
Q  115 ttctataagggatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaagttcttggactatcgtca 214  Q
     | ||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| | |  |||    
T  23040373 ctgtataaaggatgatacaggcacttttattttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaaactcttggattgttatca 23040274  T
Q  215 gctttagaatgggatcatcacttacacttgggacctatcgattttgagcttgatgctnnnnnnnngtggtggatagtttttcatttacacatcaggatgt 314  Q
     || | ||||||| | |||  |||||||||||||||||||||||||||||||||||         |||||||| |||||||||| |||||||||||||||    
T  23040273 tctatggaatgggttaatccattacacttgggacctatcgattttgagcttgatgc--caaaaaagtggtggacagtttttcatctacacatcaggatgt 23040176  T
Q  315 tacagaat 322  Q
    ||||||||    
T  23040175 tacagaat 23040168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 15 - 270
Target Start/End: Original strand, 48859144 - 48859398
Alignment:
Q  15 aagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccatctttctaatagagtgagaataggaat 114  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |    
T  48859144 aagaaggaaatgtgaaatggatcaaaccaactgaaggaagatttaagtgcaatattgatgcttctttctcccaactttctaatagagtgagaataagagt 48859243  T
Q  115 ttctataagggatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaagttcttggactatcgtca 214  Q
    || |||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||| || | ||  ||  |||    
T  48859244 ttgtataagggatgatacatgcatttttgttttggcaaaaactgaatgatttactccggtctgtgaggcacatgttggcgaagctc-tagatgattatca 48859342  T
Q  215 gctttagaatgggatcatcacttacacttgggacctatcgattttgagcttgatgc 270  Q
     |||||||||| | | || | ||||||||| |||||||||||||||||||||||||    
T  48859343 actttagaatgagtttattaattacacttgagacctatcgattttgagcttgatgc 48859398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 15 - 322
Target Start/End: Original strand, 22910874 - 22911179
Alignment:
Q  15 aagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccatctttctaatagagtgagaataggaat 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||| |||| |||||||| |    
T  22910874 aagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttcattctcacaactttctaatatagtgggaataggagt 22910973  T
Q  115 ttctataagggatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaagttcttggactatcgtca 214  Q
     | |||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||| || | || | |  |||    
T  22910974 ctgtataagggatgatacatgtacttttgttttggcaaaaactaaatggcttactccagtatgtgaggtacatgttggcgaagctcgtagattgttatca 22911073  T
Q  215 gctttagaatgggatcatcacttacacttgggacctatcgattttgagcttgatgctnnnnnnnngtggtggatagtttttcatttacacatcaggatgt 314  Q
    ||||| ||||||| |||||| ||||| ||||||  ||||||||||||||||||||          ||||||||||||||||||| |  || |||||||||    
T  22911074 gctttggaatgggttcatcaattacatttgggatttatcgattttgagcttgatg--gcaaaaaagtggtggatagtttttcatctgtacgtcaggatgt 22911171  T
Q  315 tacagaat 322  Q
    ||||||||    
T  22911172 tacagaat 22911179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 15 - 270
Target Start/End: Original strand, 26754585 - 26754834
Alignment:
Q  15 aagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccatctttctaatagagtgagaataggaat 114  Q
    ||||| |||| |||||||| |||||||||  ||||||||||||||||| |||||||||||||||||||||  | |||| ||||||||||||||||||| |    
T  26754585 aagaaagaaacgtgaaatgaatcaaaccatgtgaaggaagatttaagtacaatattgatgcttctttctcataactttataatagagtgagaataggagt 26754684  T
Q  115 ttctataagggatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaagttcttggactatcgtca 214  Q
    ||      ||||||||||||| |||||| ||||| ||||| |||| ||||||||||| || |||||||||||||||||||||| ||||||| | |  |||    
T  26754685 tt------gggatgatacatgaacttttattttgacaaaagctgagtggtttactccggtttgtgaggtacatgttggcgaagctcttggattgttatca 26754778  T
Q  215 gctttagaatgggatcatcacttacacttgggacctatcgattttgagcttgatgc 270  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||    
T  26754779 gctttagaatgggttcatcaattacacttgggacctatcgattttgaacttgatgc 26754834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 323 - 455
Target Start/End: Original strand, 26754922 - 26755054
Alignment:
Q  323 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcaacccatagattagctaatacgaccacatcttcagctagtttttag 422  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||  || ||||||| ||| |||||||||||    
T  26754922 acaatattatgtcaactatagtgttgagtttgtgaggagacaagcaaatgaggcagcccatagattatctaaggcggccacatcctcaactagtttttag 26755021  T
Q  423 attttggtaaaaataccatattgtattgaacac 455  Q
    |||||| || ||||| |  ||||||||||||||    
T  26755022 attttgatagaaatatcggattgtattgaacac 26755054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 323 - 455
Target Start/End: Original strand, 13596962 - 13597094
Alignment:
Q  323 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcaacccatagattagctaatacgaccacatcttcagctagtttttag 422  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||  || ||| ||| ||| ||||||| |||    
T  13596962 acaatactatgtcaactctagtgttgagtttgtgaggagacaagcaaatgaggcagcccctagattagctaaggcggccatatcctcaactagtttctag 13597061  T
Q  423 attttggtaaaaataccatattgtattgaacac 455  Q
    |||||| || |||||||| ||| ||||||||||    
T  13597062 attttgttagaaataccaaattatattgaacac 13597094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 323 - 455
Target Start/End: Complemental strand, 23040130 - 23039997
Alignment:
Q  323 acaatattatgtcaactctagtgttgagtttatgaggagac-aagcaaatgaggcaacccatagattagctaatacgaccacatcttcagctagttttta 421  Q
    ||||||||||||||||||||||||||||||| | ||||||| |||||||||||||| ||||||||||| ||||   | ||||||||| ||| |||||| |    
T  23040130 acaatattatgtcaactctagtgttgagtttgtaaggagaccaagcaaatgaggcagcccatagattaactaaggaggccacatctttagcaagttttca 23040031  T
Q  422 gattttggtaaaaataccatattgtattgaacac 455  Q
    |||||||||| |||||||||||| |||| |||||    
T  23040030 gattttggtagaaataccatattatattaaacac 23039997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 323 - 455
Target Start/End: Original strand, 22911217 - 22911349
Alignment:
Q  323 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcaacccatagattagctaatacgaccacatcttcagctagtttttag 422  Q
    |||||||||||||||||||||| |||||||| | ||||||||||||||||||| |  |||||||||||||||   | ||||||||||| |||||||  ||    
T  22911217 acaatattatgtcaactctagttttgagtttgtaaggagacaagcaaatgagggaggccatagattagctaaggaggccacatcttcatctagtttccag 22911316  T
Q  423 attttggtaaaaataccatattgtattgaacac 455  Q
    ||||||| | ||||| || ||| ||||||||||    
T  22911317 attttggcagaaatatcagattatattgaacac 22911349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 323 - 455
Target Start/End: Original strand, 15026403 - 15026531
Alignment:
Q  323 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcaacccatagattagctaatacgaccacatcttcagctagtttttag 422  Q
    ||||||||||||||||||||||| ||| ||| | |||||||||||||    |||| ||||||||||||||||     |||||||||||||||||||  ||    
T  15026403 acaatattatgtcaactctagtgctgactttgtaaggagacaagcaa----ggcagcccatagattagctaaggaagccacatcttcagctagtttccag 15026498  T
Q  423 attttggtaaaaataccatattgtattgaacac 455  Q
    ||||||||| |||||||| ||||||||||||||    
T  15026499 attttggtagaaataccagattgtattgaacac 15026531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 323 - 455
Target Start/End: Original strand, 48859486 - 48859618
Alignment:
Q  323 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcaacccatagattagctaatacgaccacatcttcagctagtttttag 422  Q
    |||||||||| |||||||||||||||||||| ||| ||||||||||||| |||||  | ||||| |||||||   | || |||| |||  ||||||| ||    
T  48859486 acaatattatatcaactctagtgttgagtttgtgaagagacaagcaaataaggcagtctatagactagctaaggtggccgcatcctcaattagttttcag 48859585  T
Q  423 attttggtaaaaataccatattgtattgaacac 455  Q
    ||||||||| |||||||  ||||||||||||||    
T  48859586 attttggtagaaatacccgattgtattgaacac 48859618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 323 - 389
Target Start/End: Original strand, 23586238 - 23586304
Alignment:
Q  323 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcaacccatagatta 389  Q
    ||||||||||||||||  || |||| ||||| ||||||||||| |||||||| ||||||||||||||    
T  23586238 acaatattatgtcaaccttaatgttcagtttgtgaggagacaaacaaatgagacaacccatagatta 23586304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 410 - 452
Target Start/End: Original strand, 47295175 - 47295217
Alignment:
Q  410 agctagtttttagattttggtaaaaataccatattgtattgaa 452  Q
    ||||||||||||||||||||| ||||||||| |||||||||||    
T  47295175 agctagtttttagattttggttaaaataccaaattgtattgaa 47295217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 26037104 - 26037039
Alignment:
Q  136 cacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaagttct 201  Q
    ||||||||| ||||| ||||||||||| |||| |||| | |||||||||||||||||  |||||||    
T  26037104 cacttttgtgttggcgaaaactgaatgatttagtccaatttgtgaggtacatgttggttaagttct 26037039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 410
Target Start/End: Original strand, 3566589 - 3566673
Alignment:
Q  326 atattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcaacccatagattagctaatacgaccacatcttca 410  Q
    |||||||||||| | || |||||||||| |||  |||||| |||||||| ||||| ||| |||| |||| | | |||||||||||    
T  3566589 atattatgtcaaatttaatgttgagtttgtgataagacaaacaaatgagacaaccgataaattatctaagaaggccacatcttca 3566673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 375
Target Start/End: Original strand, 28544168 - 28544216
Alignment:
Q  327 tattatgtcaactctagtgttgagtttatgaggagacaagcaaatgagg 375  Q
    |||||||| |||||||||||||||||| |  | ||||||||||||||||    
T  28544168 tattatgtaaactctagtgttgagtttgtacgaagacaagcaaatgagg 28544216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 152; Significance: 3e-80; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 15 - 270
Target Start/End: Original strand, 44021895 - 44022144
Alignment:
Q  15 aagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccatctttctaatagagtgagaataggaat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||| |||||||| |    
T  44021895 aagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttcttccagctttctaataaagtgggaataggagt 44021994  T
Q  115 ttctataagggatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaagttcttggactatcgtca 214  Q
    || ||||| ||||||||||  || ||||||||||||||||||||||||||| ||| |||| |||||||     |||||||||| ||||||||| |  |||    
T  44021995 ttgtataatggatgatacagacatttttgttttggcaaaaactgaatggttaacttcagtttgtgagg-----gttggcgaagctcttggactgttatca 44022089  T
Q  215 gctttagaatgggatcatcacttacacttgggacctatcgattttgagcttgatgc 270  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||    
T  44022090 gctttagaatgggttcatcacttacacttgggacctatc-attttgaacttgatgc 44022144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 19 - 270
Target Start/End: Original strand, 32922779 - 32923030
Alignment:
Q  19 aggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccatctttctaatagagtgagaataggaatttct 118  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| || ||||| || ||| |    
T  32922779 aggaaatgtgaaatggatcaaaccaactgaaggaatatttaagtgcaatattgatgcttctttctcccatctttataatagactgggaataagagtttgt 32922878  T
Q  119 ataagggatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaagttcttggactatcgtcagctt 218  Q
    ||||||||||||  | |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||  | ||||| | |  |||||||    
T  32922879 ataagggatgatgtaggcacttttgttttggcaaaaactgaatggtttactccagtttgtgatgtacatgttggcgaaacttttggattgttatcagctt 32922978  T
Q  219 tagaatgggatcatcacttacacttgggacctatcgattttgagcttgatgc 270  Q
    |||||| |  |||||| ||||| || | ||||||||||||||||||||||||    
T  32922979 tagaattgattcatcaattacattttgaacctatcgattttgagcttgatgc 32923030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 17 - 270
Target Start/End: Complemental strand, 30940018 - 30939765
Alignment:
Q  17 gaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccatctttctaatagagtgagaataggaattt 116  Q
    ||||||||||||||||  || ||| |||||||| ||||||||||||||||||||||| ||||||||||||| ||||| |||| |||| ||||| || |||    
T  30940018 gaaggaaatgtgaaataaattaaatcagctgaaagaagatttaagtgcaatattgatacttctttctcccagctttcaaataaagtgggaataagagttt 30939919  T
Q  117 ctataagggatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaagttcttggactatcgtcagc 216  Q
     |||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||| |||||| | ||| ||||  | | |  || |     
T  30939918 gtataagggatgatacatgcactttcgttttggcaaaaactgaatgatttactcaagtctgtgaggtatatgttgacaaagctcttttattgttatccgt 30939819  T
Q  217 tttagaatgggatcatcacttacacttgggacctatcgattttgagcttgatgc 270  Q
    |||||||| || |||||| ||||||||| |||||||||||||||||||||||||    
T  30939818 tttagaataggttcatcaattacacttgagacctatcgattttgagcttgatgc 30939765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 323 - 455
Target Start/End: Original strand, 42132081 - 42132212
Alignment:
Q  323 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcaacccatagattagctaatacgaccacatcttcagctagtttttag 422  Q
    |||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||   ||||||||||||| |||||||  |     
T  42132081 acaatattatatcaactctagtgttgagtttgtgaggagacaaacaaatgaggcaacccatagattagctaaggtgaccacatcttcatctagtttccaa 42132180  T
Q  423 attttggtaaaaataccatattgtattgaacac 455  Q
    ||||||||||||| | |||||||||||||||||    
T  42132181 attttggtaaaaa-aacatattgtattgaacac 42132212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 15 - 253
Target Start/End: Original strand, 43896137 - 43896374
Alignment:
Q  15 aagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattgatgcttctttctcccatctttctaatagagtgagaataggaat 114  Q
    ||||| ||||||| |||||||||||| ||||||| || |||||||||||| ||||||||| || ||||||||| ||||||||||| |||  |||| ||      
T  43896137 aagaaagaaatgttaaatggatcaaagcagctgaggggagatttaagtgctatattgatgttt-tttctcccagctttctaatagggtggaaatatgagg 43896235  T
Q  115 ttctataagggatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaagttcttggactatcgtca 214  Q
    || |||||||||| ||||||  |||||||||||| ||||||||||||  ||||||||||| || ||| |||||||||| |||  ||||||  |    | |    
T  43896236 ttgtataagggattatacataaacttttgttttgacaaaaactgaataatttactccagtatgcgagatacatgttggtgaaactcttggcttgatatta 43896335  T
Q  215 gctttagaatgggatcatcacttacacttgggacctatc 253  Q
    ||||||||||| | | |||| ||||||||||||| ||||    
T  43896336 gctttagaatgagtttatcaattacacttgggacatatc 43896374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 49 - 192
Target Start/End: Original strand, 39220664 - 39220807
Alignment:
Q  49 aggaagatttaagtgcaatattgatgcttctttctcccatctttctaatagagtgagaataggaatttctataagggatgatacatgcacttttgttttg 148  Q
    |||| |||||||||||||||||||||||||||| ||| | |   | ||||||||  |||||||| | |  |||| ||||||||||||||||||||||||     
T  39220664 aggaggatttaagtgcaatattgatgcttctttttccaaacaaaccaatagagttggaataggagtatgcataatggatgatacatgcacttttgtttta 39220763  T
Q  149 gcaaaaactgaatggtttactccagtctgtgaggtacatgttgg 192  Q
    || |||||||||||||||| |||| | |||||||| ||||||||    
T  39220764 gcgaaaactgaatggtttagtccaatttgtgaggtgcatgttgg 39220807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 323 - 445
Target Start/End: Original strand, 44022232 - 44022354
Alignment:
Q  323 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcaacccatagattagctaatacgaccacatcttcagctagtttttag 422  Q
    |||||| |||||||||||||||||||||||| |||| |||||| |||||||| || | |||||||||| |||   |  |||||| ||||||||||| |||    
T  44022232 acaatactatgtcaactctagtgttgagtttgtgagaagacaaacaaatgagacagctcatagattagttaaggtggtcacatcctcagctagtttctag 44022331  T
Q  423 attttggtaaaaataccatattg 445  Q
    ||||||||| |||||||||||||    
T  44022332 attttggtagaaataccatattg 44022354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 176 - 318
Target Start/End: Original strand, 42131899 - 42132039
Alignment:
Q  176 tgtgaggtacatgttggcgaagttcttggactatcgtcagctttagaatgggatcatcacttacacttgggacctatcgattttgagcttgatgctnnnn 275  Q
    |||||||||||||||||||||  ||||||| | |  ||| |||| ||||||| |||||| ||||||||| ||||||||||||||||||||| |||         
T  42131899 tgtgaggtacatgttggcgaaactcttggattgttatcaactttcgaatgggttcatcaattacacttgtgacctatcgattttgagcttggtgc--caa 42131996  T
Q  276 nnnngtggtggatagtttttcatttacacatcaggatgttaca 318  Q
        ||||||||||||||||||| | |||||||||||||||||    
T  42131997 aaaagtggtggatagtttttcatctgcacatcaggatgttaca 42132039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 323 - 454
Target Start/End: Original strand, 32924095 - 32924226
Alignment:
Q  323 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcaacccatagattagctaatacgaccacatcttcagctagtttttag 422  Q
    ||||||| ||||||||||||||||||||||| | |  ||||||| ||||||| |||| ||||||||| ||||   |  ||||  ||||| ||||||| ||    
T  32924095 acaatatcatgtcaactctagtgttgagtttgtaaaaagacaagtaaatgagacaactcatagattaactaagggggtcacactttcagatagttttcag 32924194  T
Q  423 attttggtaaaaataccatattgtattgaaca 454  Q
    ||||||||| ||||| || |||||||| ||||    
T  32924195 attttggtagaaatatcaaattgtattcaaca 32924226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 325 - 390
Target Start/End: Complemental strand, 12751148 - 12751083
Alignment:
Q  325 aatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcaacccatagattag 390  Q
    |||||||||| ||||||||| ||||||||||||| ||||| |||||||| ||||| ||||||||||    
T  12751148 aatattatgtaaactctagtattgagtttatgagaagacacgcaaatgacgcaactcatagattag 12751083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 42131785 - 42131842
Alignment:
Q  15 aagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattga 72  Q
    |||||||||||||||||| ||||||||||||| || || |||||||||||||||||||    
T  42131785 aagaaggaaatgtgaaatagatcaaaccagctaaaagaggatttaagtgcaatattga 42131842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 323 - 418
Target Start/End: Original strand, 27394627 - 27394722
Alignment:
Q  323 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcaacccatagattagctaatacgaccacatcttcagctagttt 418  Q
    |||||||||||| ||||| |||||||||||| | ||||   |||||||| || ||||| |||| |||||||| ||| ||| |||||| ||||||||    
T  27394627 acaatattatgttaactccagtgttgagtttgtaaggaattaagcaaataagacaaccaatagtttagctaagacggccatatcttctgctagttt 27394722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 198
Target Start/End: Complemental strand, 26098350 - 26098264
Alignment:
Q  112 aatttctataagggatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaagt 198  Q
    ||||| |||||||||||| || |||| |||||| ||||| |||||||||| ||||   ||| | ||||||||||||||||| |||||    
T  26098350 aatttgtataagggatgagacgtgcaattttgtgttggctaaaactgaatagtttgaaccaatttgtgaggtacatgttggtgaagt 26098264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 122; Significance: 2e-62; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 97 - 322
Target Start/End: Original strand, 15609892 - 15610115
Alignment:
Q  97 tagagtgagaataggaatttctataagggatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaa 196  Q
    ||||||| ||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||| |||    
T  15609892 tagagtgggaatatgagtttgtataagggatgatacatgcacttttgttttggcaaaaactgaatgatttactccagtttgtgagctacatgttggtgaa 15609991  T
Q  197 gttcttggactatcgtcagctttagaatgggatcatcacttacacttgggacctatcgattttgagcttgatgctnnnnnnnngtggtggatagtttttc 296  Q
    | ||||||| | |  |||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||         |||||||||||||||||    
T  15609992 gatcttggattgttatcagctttagaatgagttcatcacttacacttaggacctatcgattttgagcttgatgc--gaaaaaagtggtggatagtttttc 15610089  T
Q  297 atttacacatcaggatgttacagaat 322  Q
    || | |||||||||||||||||||||    
T  15610090 atctgcacatcaggatgttacagaat 15610115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 118 - 270
Target Start/End: Original strand, 5827373 - 5827525
Alignment:
Q  118 tataagggatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaagttcttggactatcgtcagct 217  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||| | |  ||||||    
T  5827373 tataagggatgatacagacacttttgttttggcaaaaactgaatggtttactccagtctgtaaggtacatgttggcaaagctcttggattgttatcagct 5827472  T
Q  218 ttagaatgggatcatcacttacacttgggacctatcgattttgagcttgatgc 270  Q
     | ||| ||| |||||| ||||| ||||||||||||||||||||| |||||||    
T  5827473 atggaaagggttcatcaattacatttgggacctatcgattttgagtttgatgc 5827525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 323 - 455
Target Start/End: Original strand, 15610153 - 15610285
Alignment:
Q  323 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcaacccatagattagctaatacgaccacatcttcagctagtttttag 422  Q
    |||||| |||||||||||||||||||||||| ||||||||||| ||||||||| | |||||||||||||||| ||||||||||| ||| ||||| |  ||    
T  15610153 acaatactatgtcaactctagtgttgagtttgtgaggagacaaacaaatgaggtagcccatagattagctaagacgaccacatcctcaactagtatccag 15610252  T
Q  423 attttggtaaaaataccatattgtattgaacac 455  Q
    |||||| || ||| || | ||||||||||||||    
T  15610253 attttgatagaaacactagattgtattgaacac 15610285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 323 - 454
Target Start/End: Original strand, 5827617 - 5827748
Alignment:
Q  323 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcaacccatagattagctaatacgaccacatcttcagctagtttttag 422  Q
    |||||||||| |||||||||||||||||||| | ||||||||||||||||||||| | |||| |||||||||   | |||| ||||||||||||||  ||    
T  5827617 acaatattatatcaactctagtgttgagtttgtaaggagacaagcaaatgaggcagctcatacattagctaaggaggccacgtcttcagctagtttccag 5827716  T
Q  423 attttggtaaaaataccatattgtattgaaca 454  Q
    ||||||||| ||||| || |||||||||||||    
T  5827717 attttggtagaaatatcagattgtattgaaca 5827748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 323 - 454
Target Start/End: Original strand, 3627378 - 3627509
Alignment:
Q  323 acaatattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcaacccatagattagctaatacgaccacatcttcagctagtttttag 422  Q
    |||||||| ||| ||||| | |||||||||| | ||||  |||| |||||||| |  |||||| ||||||||   | ||||||||||||||||||||||     
T  3627378 acaatattttgttaactccaatgttgagtttgtaaggaagcaagaaaatgaggtagaccatagtttagctaaggtggccacatcttcagctagtttttaa 3627477  T
Q  423 attttggtaaaaataccatattgtattgaaca 454  Q
    || |||||  |||||||| |||||||||||||    
T  3627478 atattggttgaaataccaaattgtattgaaca 3627509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 15 - 48
Target Start/End: Original strand, 15609857 - 15609890
Alignment:
Q  15 aagaaggaaatgtgaaatggatcaaaccagctga 48  Q
    ||||||||||||||||||||||||||||||||||    
T  15609857 aagaaggaaatgtgaaatggatcaaaccagctga 15609890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0913 (Bit Score: 93; Significance: 4e-45; HSPs: 3)
Name: scaffold0913
Description:

Target: scaffold0913; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 118 - 320
Target Start/End: Original strand, 3346 - 3547
Alignment:
Q  118 tataagggatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaagttcttggactatcgtcagct 217  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||| | || || |||    
T  3346 tataagggatgatacatacacttttgttttggcaaaaactaaatggtttactccagtctgtgaggtacatgttggcgaagctctaggattgtcatcggct 3445  T
Q  218 ttagaatgggatcatcacttacacttgggacctatcgattttga-gcttgatgctnnnnnnnngtggtggatagtttttcatttacacatcaggatgtta 316  Q
    |||||||||| ||||||  |||| ||| |||||||||||||| | ||||||||          |||||||||| |||||||| | |||||||||||||||    
T  3446 ttagaatgggttcatcaactacatttgagacctatcgattttcatgcttgatg--acaaaaaggtggtggataatttttcatctgcacatcaggatgtta 3543  T
Q  317 caga 320  Q
    ||||    
T  3544 caga 3547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0913; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 326 - 444
Target Start/End: Original strand, 3590 - 3708
Alignment:
Q  326 atattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcaacccatagattagctaatacgaccacatcttcagctagtttttagatt 425  Q
    ||||||||| |||||||||||||| ||| |||||||||||||||||||| || | | |||||||||||| ||| ||||||| ||| |||||||  | |||    
T  3590 atattatgtgaactctagtgttgaatttgtgaggagacaagcaaatgagccatctcgtagattagctaagacggccacatcctcatctagtttccaaatt 3689  T
Q  426 ttggtaaaaataccatatt 444  Q
    |||||  |||| |||||||    
T  3690 ttggtcgaaatcccatatt 3708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0913; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 3273 - 3329
Alignment:
Q  15 aagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattg 71  Q
    ||||||||||||||||||||||||||||| || || ||||||||| |||||| ||||    
T  3273 aagaaggaaatgtgaaatggatcaaaccaactaaacgaagatttatgtgcaagattg 3329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0898 (Bit Score: 93; Significance: 4e-45; HSPs: 3)
Name: scaffold0898
Description:

Target: scaffold0898; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 118 - 320
Target Start/End: Complemental strand, 2255 - 2054
Alignment:
Q  118 tataagggatgatacatgcacttttgttttggcaaaaactgaatggtttactccagtctgtgaggtacatgttggcgaagttcttggactatcgtcagct 217  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||| | || || |||    
T  2255 tataagggatgatacatacacttttgttttggcaaaaactaaatggtttactccagtctgtgaggtacatgttggcgaagctctaggattgtcatcggct 2156  T
Q  218 ttagaatgggatcatcacttacacttgggacctatcgattttga-gcttgatgctnnnnnnnngtggtggatagtttttcatttacacatcaggatgtta 316  Q
    |||||||||| ||||||  |||| ||| |||||||||||||| | ||||||||          |||||||||| |||||||| | |||||||||||||||    
T  2155 ttagaatgggttcatcaactacatttgagacctatcgattttcatgcttgatg--acaaaaaggtggtggataatttttcatctgcacatcaggatgtta 2058  T
Q  317 caga 320  Q
    ||||    
T  2057 caga 2054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0898; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 326 - 444
Target Start/End: Complemental strand, 2011 - 1893
Alignment:
Q  326 atattatgtcaactctagtgttgagtttatgaggagacaagcaaatgaggcaacccatagattagctaatacgaccacatcttcagctagtttttagatt 425  Q
    ||||||||| |||||||||||||| ||| |||||||||||||||||||| || | | |||||||||||| ||| ||||||| ||| |||||||  | |||    
T  2011 atattatgtgaactctagtgttgaatttgtgaggagacaagcaaatgagccatctcgtagattagctaagacggccacatcctcatctagtttccaaatt 1912  T
Q  426 ttggtaaaaataccatatt 444  Q
    |||||  |||| |||||||    
T  1911 ttggtcgaaatcccatatt 1893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0898; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 2328 - 2272
Alignment:
Q  15 aagaaggaaatgtgaaatggatcaaaccagctgaaggaagatttaagtgcaatattg 71  Q
    ||||||||||||||||||||||||||||| || || ||||||||| |||||| ||||    
T  2328 aagaaggaaatgtgaaatggatcaaaccaactaaacgaagatttatgtgcaagattg 2272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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